Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0024579

Physical Location & Seq

Genomic Coordinates Forward (+)

11553755 .. 11555721

Gene Structure 1967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G125400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGAATTGGGTATGTGTAGAAATTGTGGATCAAGATGGGAAGTCGTCACTTCTTTCCCCTGTGAAAGCGTTCGACTCTGTTGTTCTTGCCATCTATGAAGGTTTCTGCAACTTGAAACAGGTTCATTTCTCGCAAATTTTTGTTCTTTTATTCGTTGGGATTTTGTTGTCCTTTTGTATATTTAGTTATATCCTCTGGTTGTTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Usp

Protein Analysis

70

Amino Acids

7.87

Weight (kDa)

4.83

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Orthologous Genes (Group: OG0024579)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G162000_v2.0.a1 Prupe.3G125400_v2.0.a1 Prupe.3G125400_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	115
AlwI	GGATC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	135
Asp700I	GAANNNNTTC	1 cut(s)	68
BccI	CCATC	2 cut(s)	29, 98
Bsp143I	GATC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	36
BssMI	GATC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	207
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
FaiI	YATR	4 cut(s)	13, 96, 179, 189
HinfI	GANTC	1 cut(s)	74
Hpy188III	TCNNGA	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	92
HpyCH4V	TGCA	1 cut(s)	108
HpyF3I	CTNAG	1 cut(s)	207
Kzo9I	GATC	1 cut(s)	28
LpnPI	CCDG	3 cut(s)	72, 104, 181
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MluCI	AATT	3 cut(s)	4, 21, 135
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	1 cut(s)	203
MroXI	GAANNNNTTC	1 cut(s)	68
NdeII	GATC	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	68
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Sau3AI	GATC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	68
SetI	ASST	2 cut(s)	103, 123
SgeI	CNNG	6 cut(s)	44, 71, 98, 124, 131, 142
Sse9I	AATT	3 cut(s)	4, 21, 135
TaqI	TCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	4, 21, 135
TseFI	GTSAC	1 cut(s)	45
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	3 cut(s)	17, 111, 113
XapI	RAATTY	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.