Prupe.3G128600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0023632
Physical Location & Seq
Forward (+)
12943306 .. 12946129
2824 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G128600.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 618 bp
ATGGCAAAAACCAACAAGTTCACGTCCATAAACTTCAACCACATCTACGAGAAAAACCTCTCCACCAATTCCAAACCCAACGCCAATAGCAAAGGCCCTTCTCCTTCTTCTTCTTCTTCCTCCTACTCTGCCATTTCTTCACCCCACAACAAGACCCATGGCCGCATGCTTGTCCTGACCCGACCCACCCCCAAATCCATCTCCAATCCACCGCCCCTTTCGCCTCAACCTCAACCGCAACAGCAACCGCAGCAACCCCATCTCCAATCTCCTTCTCAACAAACCCAGCAGCTACCCGATCAGATCCGGGCTGATCCTCGTTCCGATGCAATCTCGCTTCGTCCTTTAGGCCGAACCGGTTCAAGCCCGCCCATATTGTCTCCGGTTCCGAGGCACAAGGAAGCTCCGGGCTTGATATTGTCGCCAAAACCGGACAAGTTCGTGCCGCCTCATCTACGGCCGGGTTTTGTAGCGAAGGAAGAGCGCCCCAGACCGGTTCAGAAACATTTTGGAGCTCCGGTTCAGTATGGGGAAGATGGCTGGCCCAAGTCGGGTGGTGGGAATGATAGGATGACTCGGCCGAGATCGAGCGGGAACCGACCGACTTCCAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.33

Weight (kDa)

10.86

Isoelectric Point (pI)

78.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023632)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54680
fragaria_vesca FvH4_6g26780
prunus_persica Prupe.3G128600_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 591
AciI CCGC 7 cut(s) 163, 212, 236, 248, 368, 446, 591
AclWI GGATC 2 cut(s) 298, 308
AcoI YGGCCR 3 cut(s) 160, 458, 578
AfiI CCNNNNNNNGG 2 cut(s) 493, 551
AgeI ACCGGT 2 cut(s) 356, 493
AgsI TTSAA 2 cut(s) 37, 363
AjiI CACGTC 1 cut(s) 24
AloI GAACNNNNNNTCC 2 cut(s) 504, 536
AluBI AGCT 3 cut(s) 292, 404, 515
AluI AGCT 3 cut(s) 292, 404, 515
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 2 cut(s) 298, 308
AoxI GGCC 6 cut(s) 94, 160, 349, 458, 542, 578
ApeKI GCWGC 2 cut(s) 250, 289
AsiGI ACCGGT 2 cut(s) 356, 493
Asp700I GAANNNNTTC 1 cut(s) 358
AspLEI GCGC 1 cut(s) 486
AspS9I GGNCC 2 cut(s) 95, 543
AsuC2I CCSGG 3 cut(s) 308, 408, 462
AsuHPI GGTGA 1 cut(s) 132
BanII GRGCYC 1 cut(s) 517
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 2 cut(s) 262, 301
BccI CCATC 3 cut(s) 206, 267, 530
BceAI ACGGC 1 cut(s) 473
BcnI CCSGG 3 cut(s) 308, 408, 462
BcoDI GTCTC 1 cut(s) 384
BfoI RGCGCY 1 cut(s) 487
BisI GCNGC 4 cut(s) 163, 251, 290, 446
BlsI GCNGC 4 cut(s) 164, 252, 291, 447
Bme1390I CCNGG 3 cut(s) 308, 408, 462
BmgBI CACGTC 1 cut(s) 24
BmgT120I GGNCC 2 cut(s) 95, 543
BmiI GGNNCC 2 cut(s) 387, 596
BmrFI CCNGG 3 cut(s) 308, 408, 462
BmsI GCATC 1 cut(s) 316
BpuMI CCSGG 3 cut(s) 308, 408, 462
BsaJI CCNNGG 2 cut(s) 157, 389
BsaWI WCCGGW 5 cut(s) 356, 382, 430, 493, 517
BsaXI ACNNNNNCTCC 4 cut(s) 246, 276, 504, 534
Bsc4I CCNNNNNNNGG 2 cut(s) 493, 551
Bse118I RCCGGY 2 cut(s) 356, 493
BseDI CCNNGG 2 cut(s) 157, 389
BseGI GGATG 1 cut(s) 576
BseLI CCNNNNNNNGG 2 cut(s) 493, 551
BseX3I CGGCCG 2 cut(s) 458, 578
BseXI GCAGC 2 cut(s) 262, 301
BseYI CCCAGC 1 cut(s) 285
Bsh1285I CGRYCG 3 cut(s) 461, 581, 602
BshFI GGCC 6 cut(s) 96, 162, 351, 460, 544, 580
BshTI ACCGGT 2 cut(s) 356, 493
BsiEI CGRYCG 3 cut(s) 461, 581, 602
BsiHKAI GWGCWC 1 cut(s) 517
BsiSI CCGG 8 cut(s) 307, 357, 383, 407, 431, 461, 494, 518
BslI CCNNNNNNNGG 2 cut(s) 493, 551
BsmAI GTCTC 1 cut(s) 384
BsnI GGCC 6 cut(s) 96, 162, 351, 460, 544, 580
Bsp1286I GDGCHC 1 cut(s) 517
Bsp143I GATC 4 cut(s) 298, 303, 313, 584
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 7 cut(s) 163, 212, 236, 248, 368, 446, 591
BspANI GGCC 6 cut(s) 96, 162, 351, 460, 544, 580
BspLI GGNNCC 2 cut(s) 387, 596
BspPI GGATC 2 cut(s) 298, 308
BspQI GCTCTTC 1 cut(s) 474
BsrBI CCGCTC 1 cut(s) 591
BsrFI RCCGGY 2 cut(s) 356, 493
BssAI RCCGGY 2 cut(s) 356, 493
BssECI CCNNGG 2 cut(s) 157, 389
BssMI GATC 4 cut(s) 298, 303, 313, 584
BssT1I CCWWGG 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 474
BstC8I GCNNGC 3 cut(s) 167, 368, 542
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 576
BstH2I RGCGCY 1 cut(s) 487
BstHHI GCGC 1 cut(s) 486
BstKTI GATC 4 cut(s) 301, 306, 316, 587
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 4 cut(s) 298, 303, 313, 584
BstMCI CGRYCG 3 cut(s) 461, 581, 602
BstMWI GCNNNNNNNGC 2 cut(s) 220, 250
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 3 cut(s) 306, 406, 460
BstV1I GCAGC 2 cut(s) 262, 301
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BstZI CGGCCG 2 cut(s) 458, 578
BsuRI GGCC 6 cut(s) 96, 162, 351, 460, 544, 580
BtgI CCRYGG 1 cut(s) 157
BtrI CACGTC 1 cut(s) 24
BtsCI GGATG 1 cut(s) 576
Cac8I GCNNGC 3 cut(s) 167, 368, 542
CfoI GCGC 1 cut(s) 486
Cfr10I RCCGGY 2 cut(s) 356, 493
Cfr13I GGNCC 2 cut(s) 95, 543
CspAI ACCGGT 2 cut(s) 356, 493
CspCI CAANNNNNGTGG 2 cut(s) 535, 570
CviAII CATG 2 cut(s) 158, 166
DpnI GATC 4 cut(s) 300, 305, 315, 586
DpnII GATC 4 cut(s) 298, 303, 313, 584
EaeI YGGCCR 3 cut(s) 160, 458, 578
EagI CGGCCG 2 cut(s) 458, 578
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Ecl136II GAGCTC 1 cut(s) 515
EclXI CGGCCG 2 cut(s) 458, 578
Eco130I CCWWGG 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 517
Eco52I CGGCCG 2 cut(s) 458, 578
Eco53kI GAGCTC 1 cut(s) 515
EcoICRI GAGCTC 1 cut(s) 515
EcoO109I RGGNCCY 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 517
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 161, 169
FaiI YATR 5 cut(s) 29, 159, 167, 374, 528
FatI CATG 2 cut(s) 157, 165
FauI CCCGC 2 cut(s) 375, 584
Fnu4HI GCNGC 4 cut(s) 163, 251, 290, 446
FokI GGATG 1 cut(s) 583
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 4 cut(s) 163, 251, 290, 446
GlaI GCGC 1 cut(s) 485
GluI GCNGC 4 cut(s) 163, 251, 290, 446
GsaI CCCAGC 1 cut(s) 289
HaeII RGCGCY 1 cut(s) 487
HaeIII GGCC 6 cut(s) 96, 162, 351, 460, 544, 580
HapII CCGG 8 cut(s) 307, 357, 383, 407, 431, 461, 494, 518
HhaI GCGC 1 cut(s) 486
Hin1II CATG 2 cut(s) 161, 169
Hin6I GCGC 1 cut(s) 484
HinP1I GCGC 1 cut(s) 484
HinfI GANTC 1 cut(s) 574
HpaII CCGG 8 cut(s) 307, 357, 383, 407, 431, 461, 494, 518
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 4 cut(s) 303, 325, 390, 501
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 1 cut(s) 21
HpyAV CCTTC 4 cut(s) 108, 114, 282, 469
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 250
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 2 cut(s) 161, 169
HspAI GCGC 1 cut(s) 484
Kzo9I GATC 4 cut(s) 298, 303, 313, 584
LguI GCTCTTC 1 cut(s) 474
LmnI GCTCC 3 cut(s) 409, 512, 520
Lsp1109I GCAGC 2 cut(s) 262, 301
LweI GCATC 1 cut(s) 316
MaeII ACGT 1 cut(s) 23
MalI GATC 4 cut(s) 300, 305, 315, 586
MbiI CCGCTC 1 cut(s) 591
MboI GATC 4 cut(s) 298, 303, 313, 584
MboII GAAGA 7 cut(s) 99, 102, 105, 108, 129, 491, 545
MflI RGATCY 1 cut(s) 303
MhlI GDGCHC 1 cut(s) 517
MluCI AATT 1 cut(s) 67
MlyI GAGTC 1 cut(s) 568
MnlI CCTC 7 cut(s) 68, 130, 234, 240, 327, 384, 459
MroXI GAANNNNTTC 1 cut(s) 358
MspI CCGG 8 cut(s) 307, 357, 383, 407, 431, 461, 494, 518
MspR9I CCNGG 3 cut(s) 308, 408, 462
MwoI GCNNNNNNNGC 2 cut(s) 220, 250
NciI CCSGG 3 cut(s) 308, 408, 462
NcoI CCATGG 1 cut(s) 157
NdeII GATC 4 cut(s) 298, 303, 313, 584
NlaIII CATG 2 cut(s) 161, 169
NlaIV GGNNCC 2 cut(s) 387, 596
NmeAIII GCCGAG 2 cut(s) 556, 606
NspI RCATGY 1 cut(s) 169
PaeI GCATGC 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 474
PdmI GAANNNNTTC 1 cut(s) 358
PinAI ACCGGT 2 cut(s) 356, 493
PkrI GCNGC 4 cut(s) 164, 252, 291, 447
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
Psp124BI GAGCTC 1 cut(s) 517
PspFI CCCAGC 1 cut(s) 285
PspN4I GGNNCC 2 cut(s) 387, 596
PspPI GGNCC 2 cut(s) 95, 543
PsuI RGATCY 1 cut(s) 303
SacI GAGCTC 1 cut(s) 517
SapI GCTCTTC 1 cut(s) 474
SatI GCNGC 4 cut(s) 163, 251, 290, 446
Sau3AI GATC 4 cut(s) 298, 303, 313, 584
Sau96I GGNCC 2 cut(s) 95, 543
SchI GAGTC 1 cut(s) 568
ScrFI CCNGG 3 cut(s) 308, 408, 462
SduI GDGCHC 1 cut(s) 517
SetI ASST 6 cut(s) 26, 60, 232, 294, 406, 517
SfaNI GCATC 1 cut(s) 316
SphI GCATGC 1 cut(s) 169
Sse9I AATT 1 cut(s) 67
SsiI CCGC 7 cut(s) 163, 212, 236, 248, 368, 446, 591
SstI GAGCTC 1 cut(s) 517
StyD4I CCNGG 3 cut(s) 306, 406, 460
StyI CCWWGG 1 cut(s) 157
TaiI ACGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 587
TaqII GACCGA 1 cut(s) 616
TasI AATT 1 cut(s) 67
TauI GCSGC 2 cut(s) 165, 448
TseI GCWGC 2 cut(s) 250, 289
XceI RCATGY 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.