Prupe.3G142000_v2.0.a1

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0020269
Physical Location & Seq
Forward (+)
15373056 .. 15379790
6735 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G142000.1

Sequence Viewer

Length: 1056 bp
ATGGCTGCTCTCCTCTCCCTTCACACCATCTCCAAACTTCAAGCCAACCTCTCTACTTCGAGGGTTACGGTAAAGCCCCGAGCTGCCCTCCATGGAGCTCAGAGAATGCGAGTCCCTTACGAGCTCAAGCAGGAACAGTCTCGTCTTTTCCACCAGCTCCCCTCTGGCCTCAACATGGAGGTAATTGTGCAGAAGGGAGTTGCAGAAAAAGAATCTGCAGAAAAAGAATCAGATGAGAAAAAGGAGAGAACAAGTGAAAACCCACCTCTTGTTTTTGTTCATGGAAGCTACCATGCTGCTTGGTGCTGGGCTGAGCACTGGATGCCTTTCTTTTCAGCTTCTGGGTATGATTGTTATGCGGTTAGCTTGTTGGGCCAGGGTGAAAGTGATGCACCCAGTGCTTCTGTTGCTGGTACTCTCCAGACACATGCAAGTGATGTTGCTGACTTCATCTGCAAAAAACTCACTTTTCCACCAGTGTTGATCGGCCACTCTTTTGGAGGTCTCATCATTCAGTACTATATTGCAAACGCTAAAGCTGACCAATTTTTAGACATGAGAGATTTTTTCCCTGAGCTTACGGGGGCTGCACTTGTCTGTTCTGTACCTCCTTCGGGCAATAGTGGATTAGTGTGGCGCTATCTCTTTTCCAAACCTATTGCTGCTTTTAAGGTTACACGTAGCTTGGCAGCAAAAGGATTTCAAACTTCTCTTCCTCTTTGTAAGGAGACATTTTTTTCTGCAACAATGGAGGATCACCTAGTTTTACGTTATCAAGAGCTAATGAAGAAAAGTTCAAGAATGCCATTATTTGATCTGCGGAAGCTCAATGCAGCGCTTCCAGTTCCTTCAGTGCCAAAATCGGCTATTGAAGTCCTTGTGTTGGGTGCAAATGACGATTTCATCGTGGATGCTGAAGGTCTCAAAGAAACAGGCCGGTTTTATGGTGTCTCTCCAATATGTGTTGAAGCGGTTGCCCATGACATGATGTTGGACTGTTTATGGGATAAGGGTGCAAAAGTTATCCTATCATGGCTAAAAGATTTGAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

352

Amino Acids

38.79

Weight (kDa)

7.63

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020269)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38360 AT5G38360 AT5G38360
malus_domestica MD17G1244700.v1.1
prunus_persica Prupe.3G142000_v2.0.a1
pyrus_communis pycom17g24750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 359, 820, 971
AclWI GGATC 1 cut(s) 762
AcoI YGGCCR 1 cut(s) 487
AcuI CTGAAG 2 cut(s) 834, 936
AdeI CACNNNGTG 1 cut(s) 398
AfaI GTAC 3 cut(s) 415, 518, 606
AfeI AGCGCT 1 cut(s) 837
AfiI CCNNNNNNNGG 3 cut(s) 175, 614, 883
AflIII ACRYGT 1 cut(s) 677
AgsI TTSAA 6 cut(s) 41, 704, 798, 872, 968, 1048
AjnI CCWGG 1 cut(s) 375
Alw21I GWGCWC 3 cut(s) 100, 126, 318
Alw26I GTCTC 5 cut(s) 144, 509, 722, 926, 955
AlwI GGATC 1 cut(s) 762
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 78
Aor51HI AGCGCT 1 cut(s) 837
AoxI GGCC 4 cut(s) 166, 373, 487, 934
ApeKI GCWGC 7 cut(s) 5, 83, 296, 587, 662, 689, 833
AspLEI GCGC 2 cut(s) 639, 838
AspS9I GGNCC 1 cut(s) 373
AsuHPI GGTGA 2 cut(s) 392, 749
AvaI CYCGRG 1 cut(s) 78
BanII GRGCYC 2 cut(s) 100, 126
Bbv12I GWGCWC 3 cut(s) 100, 126, 318
BbvI GCAGC 6 cut(s) 70, 283, 574, 649, 701, 845
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 377
BcoDI GTCTC 5 cut(s) 144, 509, 722, 926, 955
BfaI CTAG 1 cut(s) 761
BfmI CTRYAG 1 cut(s) 216
BfoI RGCGCY 2 cut(s) 640, 839
BisI GCNGC 7 cut(s) 6, 84, 297, 588, 663, 690, 834
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 7 cut(s) 7, 85, 298, 589, 664, 691, 835
BmcAI AGTACT 1 cut(s) 518
Bme1390I CCNGG 1 cut(s) 377
BmeT110I CYCGRG 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 373
BmrFI CCNGG 1 cut(s) 377
BmrI ACTGGG 1 cut(s) 390
BmsI GCATC 3 cut(s) 312, 379, 901
BmuI ACTGGG 1 cut(s) 390
BplI GAGNNNNNCTC 2 cut(s) 72, 104
BpmI CTGGAG 1 cut(s) 404
Bpu10I CCTNAGC 1 cut(s) 573
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 110
BsaAI YACGTR 1 cut(s) 680
BsaI GGTCTC 2 cut(s) 509, 926
BsaJI CCNNGG 2 cut(s) 91, 376
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 614, 883
Bse118I RCCGGY 1 cut(s) 936
Bse1I ACTGG 4 cut(s) 323, 396, 476, 842
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 2 cut(s) 91, 376
BseGI GGATG 2 cut(s) 327, 916
BseLI CCNNNNNNNGG 3 cut(s) 175, 614, 883
BseMII CTCAG 3 cut(s) 113, 303, 564
BseNI ACTGG 4 cut(s) 323, 396, 476, 842
BseXI GCAGC 6 cut(s) 70, 283, 574, 649, 701, 845
BseYI CCCAGC 1 cut(s) 306
BsgI GTGCAG 2 cut(s) 209, 573
BshFI GGCC 4 cut(s) 168, 375, 489, 936
BsiHKAI GWGCWC 3 cut(s) 100, 126, 318
BsiHKCI CYCGRG 1 cut(s) 78
BsiSI CCGG 1 cut(s) 937
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 3 cut(s) 175, 614, 883
BsmAI GTCTC 5 cut(s) 144, 509, 722, 926, 955
BsmFI GGGAC 1 cut(s) 98
BsmI GAATGC 2 cut(s) 111, 807
BsnI GGCC 4 cut(s) 168, 375, 489, 936
Bso31I GGTCTC 2 cut(s) 509, 926
BsoBI CYCGRG 1 cut(s) 78
Bsp1286I GDGCHC 3 cut(s) 100, 126, 318
Bsp143I GATC 3 cut(s) 483, 754, 814
Bsp1720I GCTNAGC 1 cut(s) 312
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 3 cut(s) 359, 820, 971
BspANI GGCC 4 cut(s) 168, 375, 489, 936
BspCNI CTCAG 3 cut(s) 112, 304, 565
BspMAI CTGCAG 1 cut(s) 220
BspPI GGATC 1 cut(s) 762
BspTNI GGTCTC 2 cut(s) 509, 926
BsrFI RCCGGY 1 cut(s) 936
BsrI ACTGG 4 cut(s) 323, 396, 476, 842
BssAI RCCGGY 1 cut(s) 936
BssECI CCNNGG 2 cut(s) 91, 376
BssMI GATC 3 cut(s) 483, 754, 814
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 3 cut(s) 70, 138, 998
Bst6I CTCTTC 1 cut(s) 717
BstAPI GCANNNNNTGC 2 cut(s) 322, 398
BstBAI YACGTR 1 cut(s) 680
BstDEI CTNAG 3 cut(s) 99, 312, 573
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 2 cut(s) 327, 916
BstH2I RGCGCY 2 cut(s) 640, 839
BstHHI GCGC 2 cut(s) 639, 838
BstKTI GATC 3 cut(s) 486, 757, 817
BstMAI GTCTC 5 cut(s) 144, 509, 722, 926, 955
BstMBI GATC 3 cut(s) 483, 754, 814
BstMWI GCNNNNNNNGC 4 cut(s) 322, 372, 398, 407
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 6 cut(s) 70, 283, 574, 649, 701, 845
BstXI CCANNNNNNTGG 1 cut(s) 497
BsuRI GGCC 4 cut(s) 168, 375, 489, 936
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 2 cut(s) 327, 916
BtsIMutI CAGTG 4 cut(s) 316, 403, 483, 858
CaiI CAGNNNCTG 1 cut(s) 341
CfoI GCGC 2 cut(s) 639, 838
Cfr10I RCCGGY 1 cut(s) 936
Cfr13I GGNCC 1 cut(s) 373
Csp6I GTAC 3 cut(s) 414, 517, 605
CspCI CAANNNNNGTGG 2 cut(s) 462, 497
CviAII CATG 9 cut(s) 92, 175, 281, 293, 428, 556, 980, 985, 1032
CviQI GTAC 3 cut(s) 414, 517, 605
DdeI CTNAG 3 cut(s) 99, 312, 573
DpnI GATC 3 cut(s) 485, 756, 816
DpnII GATC 3 cut(s) 483, 754, 814
DraIII CACNNNGTG 1 cut(s) 398
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
Ecl136II GAGCTC 2 cut(s) 98, 124
Eco130I CCWWGG 1 cut(s) 91
Eco24I GRGCYC 2 cut(s) 100, 126
Eco31I GGTCTC 2 cut(s) 509, 926
Eco47III AGCGCT 1 cut(s) 837
Eco53kI GAGCTC 2 cut(s) 98, 124
Eco57I CTGAAG 2 cut(s) 834, 936
Eco88I CYCGRG 1 cut(s) 78
EcoICRI GAGCTC 2 cut(s) 98, 124
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 91
EcoT38I GRGCYC 2 cut(s) 100, 126
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 9 cut(s) 95, 178, 284, 296, 431, 559, 983, 988, 1035
FaqI GGGAC 1 cut(s) 98
FatI CATG 9 cut(s) 91, 174, 280, 292, 427, 555, 979, 984, 1031
Fnu4HI GCNGC 7 cut(s) 6, 84, 297, 588, 663, 690, 834
FokI GGATG 2 cut(s) 334, 923
FriOI GRGCYC 2 cut(s) 100, 126
Fsp4HI GCNGC 7 cut(s) 6, 84, 297, 588, 663, 690, 834
FspBI CTAG 1 cut(s) 761
GlaI GCGC 2 cut(s) 638, 837
GluI GCNGC 7 cut(s) 6, 84, 297, 588, 663, 690, 834
GsaI CCCAGC 1 cut(s) 310
GsuI CTGGAG 1 cut(s) 404
HaeII RGCGCY 2 cut(s) 640, 839
HaeIII GGCC 4 cut(s) 168, 375, 489, 936
HapII CCGG 1 cut(s) 937
HhaI GCGC 2 cut(s) 639, 838
Hin1II CATG 9 cut(s) 95, 178, 284, 296, 431, 559, 983, 988, 1035
Hin6I GCGC 2 cut(s) 637, 836
HinP1I GCGC 2 cut(s) 637, 836
HinfI GANTC 3 cut(s) 111, 212, 227
HpaII CCGG 1 cut(s) 937
HphI GGTGA 2 cut(s) 392, 749
Hpy188I TCNGA 2 cut(s) 102, 232
Hpy188III TCNNGA 3 cut(s) 421, 776, 798
HpyAV CCTTC 5 cut(s) 29, 187, 621, 858, 911
HpyCH4III ACNGT 3 cut(s) 70, 138, 998
HpyCH4IV ACGT 2 cut(s) 679, 769
HpyF10VI GCNNNNNNNGC 4 cut(s) 322, 372, 398, 407
HpyF3I CTNAG 3 cut(s) 99, 312, 573
HpySE526I ACGT 2 cut(s) 679, 769
Hsp92II CATG 9 cut(s) 95, 178, 284, 296, 431, 559, 983, 988, 1035
HspAI GCGC 2 cut(s) 637, 836
Kzo9I GATC 3 cut(s) 483, 754, 814
LmnI GCTCC 2 cut(s) 95, 162
Lsp1109I GCAGC 6 cut(s) 70, 283, 574, 649, 701, 845
LweI GCATC 3 cut(s) 312, 379, 901
MaeI CTAG 1 cut(s) 761
MaeII ACGT 2 cut(s) 679, 769
MaeIII GTNAC 2 cut(s) 64, 673
MalI GATC 3 cut(s) 485, 756, 816
MboI GATC 3 cut(s) 483, 754, 814
MboII GAAGA 2 cut(s) 704, 799
MhlI GDGCHC 3 cut(s) 100, 126, 318
MluCI AATT 2 cut(s) 183, 545
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 972
MseI TTAA 1 cut(s) 669
MslI CAYNNNNRTG 1 cut(s) 432
MspI CCGG 1 cut(s) 937
MspR9I CCNGG 1 cut(s) 377
Mva1269I GAATGC 2 cut(s) 111, 807
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 4 cut(s) 322, 372, 398, 407
NcoI CCATGG 1 cut(s) 91
NdeII GATC 3 cut(s) 483, 754, 814
NlaIII CATG 9 cut(s) 95, 178, 284, 296, 431, 559, 983, 988, 1035
NspI RCATGY 1 cut(s) 431
PcsI WCGNNNNNNNCGW 1 cut(s) 903
PctI GAATGC 2 cut(s) 111, 807
PfeI GAWTC 2 cut(s) 212, 227
PkrI GCNGC 7 cut(s) 7, 85, 298, 589, 664, 691, 835
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Ppu21I YACGTR 1 cut(s) 680
Psp124BI GAGCTC 2 cut(s) 100, 126
Psp6I CCWGG 1 cut(s) 375
PspFI CCCAGC 1 cut(s) 306
PspGI CCWGG 1 cut(s) 375
PspPI GGNCC 1 cut(s) 373
PstI CTGCAG 1 cut(s) 220
PstNI CAGNNNCTG 1 cut(s) 341
RsaI GTAC 3 cut(s) 415, 518, 606
RsaNI GTAC 3 cut(s) 414, 517, 605
RseI CAYNNNNRTG 1 cut(s) 432
SacI GAGCTC 2 cut(s) 100, 126
SaqAI TTAA 1 cut(s) 669
SatI GCNGC 7 cut(s) 6, 84, 297, 588, 663, 690, 834
Sau3AI GATC 3 cut(s) 483, 754, 814
Sau96I GGNCC 1 cut(s) 373
ScaI AGTACT 1 cut(s) 518
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 377
SduI GDGCHC 3 cut(s) 100, 126, 318
SfaNI GCATC 3 cut(s) 312, 379, 901
SfcI CTRYAG 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 2 cut(s) 183, 545
SsiI CCGC 3 cut(s) 359, 820, 971
SspMI CTAG 1 cut(s) 761
SstI GAGCTC 2 cut(s) 100, 126
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 3 cut(s) 70, 138, 998
TaiI ACGT 2 cut(s) 682, 772
TaqI TCGA 1 cut(s) 59
TasI AATT 2 cut(s) 183, 545
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 2 cut(s) 212, 227
Tru1I TTAA 1 cut(s) 669
Tru9I TTAA 1 cut(s) 669
TscAI CASTG 4 cut(s) 323, 403, 483, 858
TseI GCWGC 7 cut(s) 5, 83, 296, 587, 662, 689, 833
TspDTI ATGAA 4 cut(s) 269, 439, 800, 892
TspRI CASTG 4 cut(s) 323, 403, 483, 858
XceI RCATGY 1 cut(s) 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
XspI CTAG 1 cut(s) 761
ZrmI AGTACT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.