Prupe.3G159000_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
17756493 .. 17757281
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G159000.1

Sequence Viewer

Length: 363 bp
ATGGACCTATGGATGCAGAAGAGGCCAATGGCTCCAAAACCTTGTAAAGAGAGTAAAAAATCACACGAGAAAAAGGAGGAAGCGATCACAAACTCCGAGTCGAAAGATGTAAAGTTCATTGCCAAGTTAAACAGCAAGATTAGTAGCAAAGCTCTGGCGATGGCGAAGATGGTTTCTTGGAGGAAGATGGAGGCAGGAGAAGAAGATCAAAAAGATGATGATGATGATGATCATAGTGATGAAGCAGTTTGGAGGAAAAGCATAATTATGGGAGAACGTTGTGCTCCACTGAATTTTTCAGGGAAAATTGATTATGATTCTGATGGAAACCTGCAGCCCGAATCGCCTGACCGAAATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.74

Weight (kDa)

5.65

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020426)

Species Orthologous Gene IDs
prunus_persica Prupe.3G159000_v2.0.a1
rosa_laevigata RLG00000022706
rosa_samantha Rh3AG311000 Rh3BG347000 Rh3CG344900 Rh3DG346300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 339
AclI AACGTT 1 cut(s) 277
AcsI RAATTY 1 cut(s) 292
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw21I GWGCWC 1 cut(s) 286
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 334
ApoI RAATTY 1 cut(s) 292
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 346
BccI CCATC 4 cut(s) 154, 163, 181, 317
BclI TGATCA 1 cut(s) 229
BfmI CTRYAG 1 cut(s) 332
BfuAI ACCTGC 1 cut(s) 339
BisI GCNGC 1 cut(s) 335
BlsI GCNGC 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 33
BmsI GCATC 1 cut(s) 3
BsaBI GATNNNNATC 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 117
Bse8I GATNNNNATC 1 cut(s) 228
BseGI GGATG 1 cut(s) 18
BseJI GATNNNNATC 1 cut(s) 228
BseMI GCAATG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 346
BshFI GGCC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 286
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 3 cut(s) 84, 205, 229
BspANI GGCC 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 336
BspMI ACCTGC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 117
BssMI GATC 3 cut(s) 84, 205, 229
BssSI CACGAG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 14
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 3 cut(s) 87, 208, 232
BstMBI GATC 3 cut(s) 84, 205, 229
BstMWI GCNNNNNNNGC 2 cut(s) 22, 343
BstSFI CTRYAG 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 346
BsuRI GGCC 1 cut(s) 25
BtgZI GCGATG 1 cut(s) 173
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 287
BveI ACCTGC 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 4
CviJI RGCY 4 cut(s) 25, 32, 152, 337
CviKI_1 RGCY 4 cut(s) 25, 32, 152, 337
DpnI GATC 3 cut(s) 86, 207, 231
DpnII GATC 3 cut(s) 84, 205, 229
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 4
FaiI YATR 5 cut(s) 10, 234, 263, 269, 315
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 335
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 335
GluI GCNGC 1 cut(s) 335
HaeIII GGCC 1 cut(s) 25
HinfI GANTC 3 cut(s) 98, 317, 341
Hpy188I TCNGA 2 cut(s) 97, 322
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 16, 334
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 343
HpySE526I ACGT 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 3 cut(s) 84, 205, 229
LmnI GCTCC 2 cut(s) 37, 289
LpnPI CCDG 4 cut(s) 140, 180, 285, 344
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 1 cut(s) 3
MaeII ACGT 1 cut(s) 277
MalI GATC 3 cut(s) 86, 207, 231
MboI GATC 3 cut(s) 84, 205, 229
MboII GAAGA 5 cut(s) 31, 178, 196, 212, 215
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 3 cut(s) 264, 292, 306
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 5 cut(s) 15, 70, 174, 184, 246
MseI TTAA 1 cut(s) 128
MslI CAYNNNNRTG 2 cut(s) 237, 266
MwoI GCNNNNNNNGC 2 cut(s) 22, 343
NdeII GATC 3 cut(s) 84, 205, 229
NlaIV GGNNCC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 317, 341
PkrI GCNGC 1 cut(s) 336
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
Psp1406I AACGTT 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 336
RseI CAYNNNNRTG 2 cut(s) 237, 266
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 1 cut(s) 335
Sau3AI GATC 3 cut(s) 84, 205, 229
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 107
SduI GDGCHC 1 cut(s) 286
SetI ASST 5 cut(s) 9, 43, 154, 280, 333
SfaNI GCATC 1 cut(s) 3
SfcI CTRYAG 1 cut(s) 332
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 2 cut(s) 237, 266
Sse9I AATT 3 cut(s) 264, 292, 306
TaiI ACGT 1 cut(s) 280
TaqI TCGA 1 cut(s) 101
TasI AATT 3 cut(s) 264, 292, 306
TfiI GAWTC 2 cut(s) 317, 341
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 1 cut(s) 294
TseI GCWGC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 106, 255
TspRI CASTG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.