Rh3DG346300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
39186046 .. 39186261
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG346300.1

Sequence Viewer

Length: 216 bp
ATGGTTTCTTGGCGGAAAGTAGAAGATGCTGGAGTCGACAATGTCCCTTCCCATTACGATCATGATACTAGTGATGAAGCAGTTTGGAGGAAAGGAATCTTGATGGGAGAGCGTTGTAGTCCACTGAATTTTTCTGGGAAGATTGTTTATGACTCTGAAGGAAACCAGCTGCTCAAATCCGATTCACCTCATCATGATTACCATCAAGATCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.1

Weight (kDa)

5.08

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020426)

Species Orthologous Gene IDs
prunus_persica Prupe.3G159000_v2.0.a1
rosa_laevigata RLG00000022706
rosa_samantha Rh3AG311000 Rh3BG347000 Rh3CG344900 Rh3DG346300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 36
AciI CCGC 1 cut(s) 13
AclWI GGATC 1 cut(s) 203
AcsI RAATTY 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 177
AhlI ACTAGT 1 cut(s) 68
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AlwI GGATC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 177
BbvI GCAGC 1 cut(s) 156
BccI CCATC 2 cut(s) 97, 210
BcuI ACTAGT 1 cut(s) 68
BfaI CTAG 2 cut(s) 69, 214
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
BmsI GCATC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 201
BseJI GATNNNNATC 1 cut(s) 201
BseXI GCAGC 1 cut(s) 156
BslFI GGGAC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 29
Bsp143I GATC 2 cut(s) 58, 208
BspACI CCGC 1 cut(s) 13
BspHI TCATGA 2 cut(s) 61, 193
BspPI GGATC 1 cut(s) 203
BssMI GATC 2 cut(s) 58, 208
BstKTI GATC 2 cut(s) 61, 211
BstMBI GATC 2 cut(s) 58, 208
BstV1I GCAGC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 122
CciI TCATGA 2 cut(s) 61, 193
CviAII CATG 2 cut(s) 62, 194
CviJI RGCY 1 cut(s) 169
CviKI_1 RGCY 1 cut(s) 169
DpnI GATC 2 cut(s) 60, 210
DpnII GATC 2 cut(s) 58, 208
EciI GGCGGA 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 177
FaeI CATG 2 cut(s) 65, 197
FaiI YATR 3 cut(s) 63, 150, 195
FaqI GGGAC 1 cut(s) 29
FatI CATG 2 cut(s) 61, 193
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 2 cut(s) 69, 214
GluI GCNGC 1 cut(s) 170
GsuI CTGGAG 1 cut(s) 51
Hin1II CATG 2 cut(s) 65, 197
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 4 cut(s) 33, 96, 152, 182
HphI GGTGA 1 cut(s) 177
Hpy166II GTNNAC 2 cut(s) 37, 122
Hpy188I TCNGA 2 cut(s) 157, 181
Hpy188III TCNNGA 4 cut(s) 62, 100, 194, 206
Hpy8I GTNNAC 2 cut(s) 37, 122
HpyAV CCTTC 2 cut(s) 57, 152
Hsp92II CATG 2 cut(s) 65, 197
Kzo9I GATC 2 cut(s) 58, 208
LpnPI CCDG 3 cut(s) 15, 120, 179
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 1 cut(s) 16
MaeI CTAG 2 cut(s) 69, 214
MalI GATC 2 cut(s) 60, 210
MboI GATC 2 cut(s) 58, 208
MboII GAAGA 2 cut(s) 35, 151
MflI RGATCY 1 cut(s) 208
MluCI AATT 1 cut(s) 127
MlyI GAGTC 2 cut(s) 42, 146
MnlI CCTC 2 cut(s) 81, 198
MspA1I CMGCKG 1 cut(s) 169
NdeII GATC 2 cut(s) 58, 208
NlaIII CATG 2 cut(s) 65, 197
PagI TCATGA 2 cut(s) 61, 193
PfeI GAWTC 2 cut(s) 96, 182
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 171
PleI GAGTC 2 cut(s) 41, 146
PpsI GAGTC 2 cut(s) 41, 146
PsuI RGATCY 1 cut(s) 208
PsyI GACNNNGTC 1 cut(s) 41
PvuII CAGCTG 1 cut(s) 169
SalI GTCGAC 1 cut(s) 35
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 2 cut(s) 58, 208
SchI GAGTC 2 cut(s) 42, 146
SetI ASST 2 cut(s) 171, 190
SfaNI GCATC 1 cut(s) 16
SgeI CNNG 8 cut(s) 21, 42, 74, 81, 112, 147, 178, 206
SpeI ACTAGT 1 cut(s) 68
Sse9I AATT 1 cut(s) 127
SsiI CCGC 1 cut(s) 13
SspMI CTAG 2 cut(s) 69, 214
TaqI TCGA 1 cut(s) 36
TasI AATT 1 cut(s) 127
TfiI GAWTC 2 cut(s) 96, 182
TscAI CASTG 1 cut(s) 129
TseI GCWGC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 90
TspRI CASTG 1 cut(s) 129
Tth111I GACNNNGTC 1 cut(s) 41
XapI RAATTY 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 36
XspI CTAG 2 cut(s) 69, 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.