Prupe.3G203800_v2.0.a1
ERF Family

Pectate lyase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0022498
Physical Location & Seq
Forward (+)
21185008 .. 21185223
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G203800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 216 bp
ATGGTTGTGATAGCAAAAGGAAACTACCTGGCTGGTGCAGTGAAGTTTCAAGGGCCCTGCAAAGCGCCGGTTAGCGTTCGAGTTAAAGGAACCCTGCAGGCTCTTGCAGAGCCAGAAAAGCTCAAGTCACAAGATGGTTGGGTCGTTTTCCAAAATATTGATGGGTTAACAGTCTCAGGAGGTGGCACTTTTGATGGCCAAGGATCAATAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

72

Amino Acids

7.31

Weight (kDa)

8.93

Isoelectric Point (pI)

32.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022498)

Species Orthologous Gene IDs
prunus_persica Prupe.3G203400_v2.0.a1 Prupe.3G203500_v2.0.a1 Prupe.3G203700_v2.0.a1 Prupe.3G203800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 211
AcoI YGGCCR 1 cut(s) 196
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 2 cut(s) 121, 212
AluI AGCT 2 cut(s) 121, 212
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 1 cut(s) 211
AoxI GGCC 2 cut(s) 53, 196
ApaI GGGCCC 1 cut(s) 57
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 2 cut(s) 53, 54
BaeGI GKGCMC 1 cut(s) 57
BalI TGGCCA 1 cut(s) 198
BanII GRGCYC 1 cut(s) 57
BccI CCATC 3 cut(s) 128, 155, 188
BciT130I CCWGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 178
BfmI CTRYAG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 29
BmgT120I GGNCC 2 cut(s) 53, 54
BmiI GGNNCC 2 cut(s) 55, 91
BmrFI CCNGG 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 199
Bse118I RCCGGY 1 cut(s) 67
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 189
BseSI GKGCMC 1 cut(s) 57
BsgI GTGCAG 1 cut(s) 57
BshFI GGCC 2 cut(s) 55, 198
BsiSI CCGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 178
BsnI GGCC 2 cut(s) 55, 198
Bsp120I GGGCCC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 203
BspANI GGCC 2 cut(s) 55, 198
BspCNI CTCAG 1 cut(s) 188
BspLI GGNNCC 2 cut(s) 55, 91
BspMAI CTGCAG 1 cut(s) 99
BspPI GGATC 1 cut(s) 211
BsrFI RCCGGY 1 cut(s) 67
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 175
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 1 cut(s) 206
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 118
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 95
BstSLI GKGCMC 1 cut(s) 57
BsuRI GGCC 2 cut(s) 55, 198
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 53, 54
CviJI RGCY 7 cut(s) 32, 55, 101, 112, 121, 198, 212
CviKI_1 RGCY 7 cut(s) 32, 55, 101, 112, 121, 198, 212
DdeI CTNAG 1 cut(s) 175
DpnI GATC 1 cut(s) 205
DpnII GATC 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 57
EcoO109I RGGNCCY 2 cut(s) 53, 54
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 199
FriOI GRGCYC 1 cut(s) 57
GlaI GCGC 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 2 cut(s) 55, 198
HapII CCGG 1 cut(s) 68
HhaI GCGC 1 cut(s) 67
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HpaI GTTAAC 1 cut(s) 168
HpaII CCGG 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 177
Hpy8I GTNNAC 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 4 cut(s) 38, 60, 97, 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 118
HpyF3I CTNAG 1 cut(s) 175
HspAI GCGC 1 cut(s) 65
KspAI GTTAAC 1 cut(s) 168
Kzo9I GATC 1 cut(s) 203
LpnPI CCDG 9 cut(s) 14, 18, 41, 70, 81, 83, 107, 126, 162
MaeIII GTNAC 1 cut(s) 126
MalI GATC 1 cut(s) 205
MboI GATC 1 cut(s) 203
MhlI GDGCHC 1 cut(s) 57
MlsI TGGCCA 1 cut(s) 198
MluNI TGGCCA 1 cut(s) 198
MnlI CCTC 1 cut(s) 173
Mox20I TGGCCA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 198
MseI TTAA 3 cut(s) 84, 167, 214
Msp20I TGGCCA 1 cut(s) 198
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 118
NdeII GATC 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 55, 91
NmuCI GTSAC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 55, 91
PspOMI GGGCCC 1 cut(s) 53
PspPI GGNCC 2 cut(s) 53, 54
PstI CTGCAG 1 cut(s) 99
SaqAI TTAA 3 cut(s) 84, 167, 214
Sau3AI GATC 1 cut(s) 203
Sau96I GGNCC 2 cut(s) 53, 54
SbfI CCTGCAGG 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 29
SdaI CCTGCAGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 57
SetI ASST 4 cut(s) 30, 123, 184, 214
SfcI CTRYAG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse8387I CCTGCAGG 1 cut(s) 99
SspI AATATT 1 cut(s) 157
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 79
Tru1I TTAA 3 cut(s) 84, 167, 214
Tru9I TTAA 3 cut(s) 84, 167, 214
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 126
TspRI CASTG 1 cut(s) 45
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.