Prupe.3G218200_v2.0.a1

Transmembrane protein 97-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0024307
Physical Location & Seq
Forward (+)
21991650 .. 21992516
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G218200.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 519 bp
ATGGATGCTTTAGTGAAGACAATCGACGCCATACTCTTTGTGATGTTTGCCATAACTGCAGTGAACGCGGTGCTGATAGACGTCCAGTTGTGTCTGCCAGCAAGCTTCTTCTCAAGCTCGCTGGCGGAGCTCAAAAACTGGTACGTCCGTGAGTTCGAGGATTATCTTGGCAAAGAGAAGCCTCATTTCTTCCTTGGCCTCATATGGGTTGAGCTCGTATTCCAGTGGCCTCTTCTGGTCGCCAACTTGTATGGGATTTGGGCCGCTAAACCATGGTACAACACCACCTGCTTGGCCTATGGCGCCTCTTTCTTCACCACCATGGGCGCTATATTAGCAGAGCTCATAGGGTCGGGCAAGGCATCTAATAAAATGTTAAAGTTGTACTACCCTGCTATGGGGTTTGCTCTCCTGGCCATCCTGCGGGGGCTGCTCCCTCCTCCGTCCGCCACTTCTTCAACCGGTGGCAGAGGAACAACCAAAAGGGTCGGCCCACCAAAGAATAAGAAGATGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2781

Protein Analysis

173

Amino Acids

18.96

Weight (kDa)

9.37

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024307)

Species Orthologous Gene IDs
malus_domestica MD09G1107500.v1.1 MD17G1095600.v1.1
prunus_persica Prupe.3G218200_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 296
AatII GACGTC 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 302
AccII CGCG 1 cut(s) 68
AciI CCGC 5 cut(s) 68, 125, 264, 424, 447
AcoI YGGCCR 1 cut(s) 414
AcyI GRCGYC 3 cut(s) 27, 81, 303
AfaI GTAC 3 cut(s) 143, 278, 386
AfiI CCNNNNNNNGG 4 cut(s) 205, 397, 398, 423
AgeI ACCGGT 1 cut(s) 461
AgsI TTSAA 1 cut(s) 459
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 5 cut(s) 105, 117, 130, 214, 343
AluI AGCT 5 cut(s) 105, 117, 130, 214, 343
Alw21I GWGCWC 3 cut(s) 132, 216, 345
AoxI GGCC 6 cut(s) 196, 227, 261, 294, 414, 490
ApeKI GCWGC 1 cut(s) 430
AsiGI ACCGGT 1 cut(s) 461
AspLEI GCGC 2 cut(s) 305, 329
AspS9I GGNCC 2 cut(s) 261, 491
AsuHPI GGTGA 1 cut(s) 307
BaeI ACNNNNGTAYC 2 cut(s) 133, 166
BalI TGGCCA 1 cut(s) 416
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 3 cut(s) 132, 216, 345
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 3 cut(s) 132, 216, 345
BbvI GCAGC 1 cut(s) 417
BccI CCATC 1 cut(s) 425
BciT130I CCWGG 1 cut(s) 413
BfmI CTRYAG 1 cut(s) 57
BfoI RGCGCY 2 cut(s) 306, 330
BfuAI ACCTGC 1 cut(s) 296
BisI GCNGC 2 cut(s) 264, 431
BlsI GCNGC 2 cut(s) 265, 432
Bme1390I CCNGG 1 cut(s) 413
BmgT120I GGNCC 2 cut(s) 261, 491
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 413
BmsI GCATC 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 97
BsaHI GRCGYC 3 cut(s) 27, 81, 303
BsaJI CCNNGG 3 cut(s) 193, 272, 321
BsaWI WCCGGW 1 cut(s) 461
Bsc4I CCNNNNNNNGG 4 cut(s) 205, 397, 398, 423
Bse118I RCCGGY 1 cut(s) 461
Bse1I ACTGG 3 cut(s) 85, 143, 223
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 3 cut(s) 193, 272, 321
BseGI GGATG 2 cut(s) 10, 417
BseLI CCNNNNNNNGG 4 cut(s) 205, 397, 398, 423
BseNI ACTGG 3 cut(s) 85, 143, 223
BseRI GAGGAG 1 cut(s) 429
BseXI GCAGC 1 cut(s) 417
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 6 cut(s) 198, 229, 263, 296, 416, 492
BshNI GGYRCC 1 cut(s) 302
BshTI ACCGGT 1 cut(s) 461
BsiHKAI GWGCWC 3 cut(s) 132, 216, 345
BsiSI CCGG 1 cut(s) 462
BslI CCNNNNNNNGG 4 cut(s) 205, 397, 398, 423
BsnI GGCC 6 cut(s) 198, 229, 263, 296, 416, 492
Bsp1286I GDGCHC 3 cut(s) 132, 216, 345
Bsp19I CCATGG 2 cut(s) 272, 321
BspACI CCGC 5 cut(s) 68, 125, 264, 424, 447
BspANI GGCC 6 cut(s) 198, 229, 263, 296, 416, 492
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 302
BsrFI RCCGGY 1 cut(s) 461
BsrI ACTGG 3 cut(s) 85, 143, 223
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 3 cut(s) 193, 272, 321
BssNI GRCGYC 3 cut(s) 27, 81, 303
BssT1I CCWWGG 3 cut(s) 193, 272, 321
Bst2UI CCWGG 1 cut(s) 413
Bst6I CTCTTC 1 cut(s) 237
BstACI GRCGYC 3 cut(s) 27, 81, 303
BstC8I GCNNGC 4 cut(s) 99, 103, 119, 123
BstDSI CCRYGG 2 cut(s) 272, 321
BstF5I GGATG 2 cut(s) 10, 417
BstFNI CGCG 1 cut(s) 68
BstH2I RGCGCY 2 cut(s) 306, 330
BstHHI GCGC 2 cut(s) 305, 329
BstMWI GCNNNNNNNGC 7 cut(s) 56, 65, 127, 302, 335, 413, 430
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 57
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 417
BstV2I GAAGAC 1 cut(s) 23
BstXI CCANNNNNNTGG 1 cut(s) 292
BsuRI GGCC 6 cut(s) 198, 229, 263, 296, 416, 492
BtgI CCRYGG 2 cut(s) 272, 321
BtsCI GGATG 2 cut(s) 10, 417
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 230
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 4 cut(s) 99, 103, 119, 123
CfoI GCGC 2 cut(s) 305, 329
Cfr10I RCCGGY 1 cut(s) 461
Cfr13I GGNCC 2 cut(s) 261, 491
CseI GACGC 1 cut(s) 35
Csp6I GTAC 3 cut(s) 142, 277, 385
CspAI ACCGGT 1 cut(s) 461
CviAII CATG 2 cut(s) 273, 322
CviQI GTAC 3 cut(s) 142, 277, 385
DinI GGCGCC 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
EciI GGCGGA 2 cut(s) 140, 436
Ecl136II GAGCTC 3 cut(s) 130, 214, 343
Eco130I CCWWGG 3 cut(s) 193, 272, 321
Eco24I GRGCYC 3 cut(s) 132, 216, 345
Eco53kI GAGCTC 3 cut(s) 130, 214, 343
EcoICRI GAGCTC 3 cut(s) 130, 214, 343
EcoRII CCWGG 1 cut(s) 411
EcoT14I CCWWGG 3 cut(s) 193, 272, 321
EcoT38I GRGCYC 3 cut(s) 132, 216, 345
EgeI GGCGCC 1 cut(s) 304
EheI GGCGCC 1 cut(s) 304
ErhI CCWWGG 3 cut(s) 193, 272, 321
FaeI CATG 2 cut(s) 276, 325
FatI CATG 2 cut(s) 272, 321
FauI CCCGC 1 cut(s) 417
FauNDI CATATG 1 cut(s) 203
Fnu4HI GCNGC 2 cut(s) 264, 431
FokI GGATG 2 cut(s) 17, 404
FriOI GRGCYC 3 cut(s) 132, 216, 345
Fsp4HI GCNGC 2 cut(s) 264, 431
GlaI GCGC 2 cut(s) 304, 328
GluI GCNGC 2 cut(s) 264, 431
HaeII RGCGCY 2 cut(s) 306, 330
HaeIII GGCC 6 cut(s) 198, 229, 263, 296, 416, 492
HapII CCGG 1 cut(s) 462
HgaI GACGC 1 cut(s) 35
HhaI GCGC 2 cut(s) 305, 329
Hin1I GRCGYC 3 cut(s) 27, 81, 303
Hin1II CATG 2 cut(s) 276, 325
Hin6I GCGC 2 cut(s) 303, 327
HinP1I GCGC 2 cut(s) 303, 327
HindIII AAGCTT 1 cut(s) 103
HpaII CCGG 1 cut(s) 462
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 64
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 29
HpyCH4IV ACGT 2 cut(s) 81, 144
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 7 cut(s) 56, 65, 127, 302, 335, 413, 430
HpySE526I ACGT 2 cut(s) 81, 144
Hsp92I GRCGYC 3 cut(s) 27, 81, 303
Hsp92II CATG 2 cut(s) 276, 325
HspAI GCGC 2 cut(s) 303, 327
KasI GGCGCC 1 cut(s) 302
LmnI GCTCC 2 cut(s) 127, 438
Lsp1109I GCAGC 1 cut(s) 417
LweI GCATC 1 cut(s) 371
MaeII ACGT 2 cut(s) 81, 144
MboII GAAGA 6 cut(s) 28, 100, 181, 224, 304, 447
MhlI GDGCHC 3 cut(s) 132, 216, 345
MlsI TGGCCA 1 cut(s) 416
MluNI TGGCCA 1 cut(s) 416
Mly113I GGCGCC 1 cut(s) 303
MnlI CCTC 8 cut(s) 151, 192, 209, 240, 316, 447, 450, 464
Mox20I TGGCCA 1 cut(s) 416
MscI TGGCCA 1 cut(s) 416
MseI TTAA 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 416
MspI CCGG 1 cut(s) 462
MspR9I CCNGG 1 cut(s) 413
MvaI CCWGG 1 cut(s) 413
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 7 cut(s) 56, 65, 127, 302, 335, 413, 430
NarI GGCGCC 1 cut(s) 303
NcoI CCATGG 2 cut(s) 272, 321
NdeI CATATG 1 cut(s) 203
NlaIII CATG 2 cut(s) 276, 325
NlaIV GGNNCC 1 cut(s) 304
PaqCI CACCTGC 1 cut(s) 296
PinAI ACCGGT 1 cut(s) 461
PkrI GCNGC 2 cut(s) 265, 432
PluTI GGCGCC 1 cut(s) 306
Psp124BI GAGCTC 3 cut(s) 132, 216, 345
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 2 cut(s) 261, 491
PstI CTGCAG 1 cut(s) 61
RsaI GTAC 3 cut(s) 143, 278, 386
RsaNI GTAC 3 cut(s) 142, 277, 385
RseI CAYNNNNRTG 1 cut(s) 320
SacI GAGCTC 3 cut(s) 132, 216, 345
SaqAI TTAA 1 cut(s) 377
SatI GCNGC 2 cut(s) 264, 431
Sau96I GGNCC 2 cut(s) 261, 491
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 3 cut(s) 132, 216, 345
SetI ASST 8 cut(s) 84, 107, 119, 132, 147, 216, 290, 345
SfaNI GCATC 1 cut(s) 371
SfcI CTRYAG 1 cut(s) 57
SfoI GGCGCC 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
SsiI CCGC 5 cut(s) 68, 125, 264, 424, 447
SspDI GGCGCC 1 cut(s) 302
SstI GAGCTC 3 cut(s) 132, 216, 345
StyD4I CCNGG 1 cut(s) 411
StyI CCWWGG 3 cut(s) 193, 272, 321
TaiI ACGT 2 cut(s) 84, 147
TaqI TCGA 2 cut(s) 24, 156
TatI WGTACW 1 cut(s) 384
TauI GCSGC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TscAI CASTG 2 cut(s) 66, 230
TseI GCWGC 1 cut(s) 430
TspGWI ACGGA 2 cut(s) 137, 432
TspRI CASTG 2 cut(s) 66, 230
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.