Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0024442

Physical Location & Seq

Genomic Coordinates Reverse (-)

25718193 .. 25719326

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G282900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCAATCTTCTTTTCTGTCATATTGTTATTTGTGGGAATTGGGTTCTTGATCTTAGTCCATGTTTGGATTGTTGGGAGGGCTTTCAGAAGAGGAGGGTTTGGTAATGGCTCTATGGTTGCCATGGCCAGCAGTACAGGTGGCACAGCAAGCATGTCCAAAGATGACCTAGAAAAGCTTCCTAGCTTTGATTATGTAGCCAATTGGGACAAGCCAGGTAGCCCTGTGGATTGTGCAGTGTGCTTGGACAGCTTCAAGATGGGCGAGAAGTGCAGGCTGTTGCCTCTGTGCAAGCACAGTTTTCATGCTCAGTGCGTGGATGCATGGCTTTTGCGGACACCCATTTGTCCCATTTGCAGAAGCAGGACTGCTGAGCCCCAGAAAGAAGGGCCTGTTACAGATGCTAGCGTTGACCTGAGGGAAAGTCAAACAACCGGAAGCAGGCATTTGAGTGACATTAGAATTGAATTGAGGGAGAACCAGACAACGGAAAGTGGGCACCTGTCTGTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

172

Amino Acids

18.76

Weight (kDa)

6.94

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024442)

Species	Orthologous Gene IDs
malus_domestica	MD17G1035700.v1.1
prunus_persica	Prupe.3G282900_v2.0.a1
pyrus_communis	pycom17g03280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	498
AciI	CCGC	1 cut(s)	334
AcoI	YGGCCR	1 cut(s)	126
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	441, 487
AgsI	TTSAA	2 cut(s)	256, 467
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	3 cut(s)	178, 186, 252
AluI	AGCT	3 cut(s)	178, 186, 252
AoxI	GGCC	2 cut(s)	126, 389
Asp700I	GAANNNNTTC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	389
AsuNHI	GCTAGC	1 cut(s)	404
AxyI	CCTNAGG	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	501
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	498
BanII	GRGCYC	1 cut(s)	378
BccI	CCATC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	216
BfaI	CTAG	3 cut(s)	170, 183, 405
BlpI	GCTNAGC	1 cut(s)	372
Bme1390I	CCNGG	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	500
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	310, 391
BmtI	GCTAGC	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	2 cut(s)	441, 487
Bse21I	CCTNAGG	1 cut(s)	416
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	441, 487
BseMII	CTCAG	3 cut(s)	323, 363, 407
BseRI	GAGGAG	1 cut(s)	108
BseSI	GKGCMC	1 cut(s)	501
BsgI	GTGCAG	2 cut(s)	255, 292
BshFI	GGCC	2 cut(s)	128, 391
BshNI	GGYRCC	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	2 cut(s)	221, 333
BslI	CCNNNNNNNGG	2 cut(s)	441, 487
BsmFI	GGGAC	2 cut(s)	221, 333
BsnI	GGCC	2 cut(s)	128, 391
Bsp1286I	GDGCHC	2 cut(s)	378, 501
Bsp143I	GATC	1 cut(s)	51
Bsp1720I	GCTNAGC	1 cut(s)	372
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	2 cut(s)	128, 391
BspCNI	CTCAG	3 cut(s)	322, 364, 408
BspLI	GGNNCC	1 cut(s)	500
BspOI	GCTAGC	1 cut(s)	408
BspT107I	GGYRCC	1 cut(s)	498
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	85
BstC8I	GCNNGC	6 cut(s)	130, 151, 275, 293, 406, 443
BstDEI	CTNAG	4 cut(s)	55, 309, 372, 416
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 249, 270
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	501
Bsu36I	CCTNAGG	1 cut(s)	416
BsuRI	GGCC	2 cut(s)	128, 391
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	243, 317
Cac8I	GCNNGC	6 cut(s)	130, 151, 275, 293, 406, 443
Cfr13I	GGNCC	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	5 cut(s)	62, 124, 154, 305, 324
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	4 cut(s)	55, 309, 372, 416
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	378
Eco81I	CCTNAGG	1 cut(s)	416
EcoO109I	RGGNCCY	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	5 cut(s)	65, 127, 157, 308, 327
FaiI	YATR	8 cut(s)	23, 63, 116, 125, 155, 195, 306, 325
FaqI	GGGAC	2 cut(s)	221, 333
FatI	CATG	5 cut(s)	61, 123, 153, 304, 323
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	378
FspBI	CTAG	3 cut(s)	170, 183, 405
HaeIII	GGCC	2 cut(s)	128, 391
HapII	CCGG	1 cut(s)	435
Hin1II	CATG	5 cut(s)	65, 127, 157, 308, 327
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	176
HpaII	CCGG	1 cut(s)	435
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	2 cut(s)	49, 256
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	5 cut(s)	236, 273, 291, 323, 357
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 249, 270
HpyF3I	CTNAG	4 cut(s)	55, 309, 372, 416
Hsp92II	CATG	5 cut(s)	65, 127, 157, 308, 327
Kzo9I	GATC	1 cut(s)	51
LweI	GCATC	2 cut(s)	310, 391
MaeI	CTAG	3 cut(s)	170, 183, 405
MaeIII	GTNAC	2 cut(s)	394, 452
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	1 cut(s)	102
MfeI	CAATTG	1 cut(s)	202
MhlI	GDGCHC	2 cut(s)	378, 501
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	4 cut(s)	39, 202, 462, 467
MluNI	TGGCCA	1 cut(s)	128
MnlI	CCTC	6 cut(s)	72, 86, 89, 294, 411, 465
Mox20I	TGGCCA	1 cut(s)	128
Mph1103I	ATGCAT	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	128
MslI	CAYNNNNRTG	1 cut(s)	450
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	216
MunI	CAATTG	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	150, 249, 270
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	51
NheI	GCTAGC	1 cut(s)	404
NlaIII	CATG	5 cut(s)	65, 127, 157, 308, 327
NlaIV	GGNNCC	1 cut(s)	500
NmuCI	GTSAC	1 cut(s)	452
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	500
PspPI	GGNCC	1 cut(s)	389
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	450
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	2 cut(s)	378, 501
SetI	ASST	8 cut(s)	142, 171, 180, 188, 220, 254, 417, 504
SfaNI	GCATC	2 cut(s)	310, 391
SmiMI	CAYNNNNRTG	1 cut(s)	450
Sse9I	AATT	4 cut(s)	39, 202, 462, 467
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	3 cut(s)	170, 183, 405
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	299
TasI	AATT	4 cut(s)	39, 202, 462, 467
TatI	WGTACW	1 cut(s)	134
TscAI	CASTG	2 cut(s)	243, 317
TseFI	GTSAC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	293
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	2 cut(s)	243, 317
XceI	RCATGY	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	3 cut(s)	170, 183, 405
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.