Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0024442

Physical Location & Seq

Genomic Coordinates Forward (+)

2149683 .. 2150267

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g03280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAGTGACAAAATTGGAGGTGTTGCAGCGCAGATTGTGGCAATGGCGATCTTCATGTCAGTAATATTGTTGTTTTTGGGAATCGGGTTCTTGATCTTAGTCCATGTGTGGATCGTTGGGAGGGCTTTCAGAAGAGGAGGACTTGGCGGCAATGCCTTAACGGCAGCTGCCATGGCCGCCGGCAGAACTGCCACCAGTGGAGCCGCCACAACGTGCATGTCGAAAGACGAAGTGGAGAAGCTTCCAAGCTATGATTACGAAGCTAATTACAAAAGTAGCCCTGTGGATTGTGCAGTGTGCTTGGACAACTTCAAGATGGGCGAGAAGTGCAGGCTATTGCCCTTGTGCGGGCACAGCTTCCATGCCCATTGCGTTGATGCGTGGCTTTTGAGGACACCGATTTGTCCGATATGCCGGGCCCGAACTGGCACTGCTGCTGGTTTGGCCGGGAAGGGAGTGCCGGTTGCCGATGCCGGCGTTGAATTAACGGAGAGTCAAACAAGTGGAAGCGGGCATTTGAGTGATGCTAGAGTTGACTTGGGGGAGAGGCAGGCATTAGAAAGTGGGCACTCGTCACCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

195

Amino Acids

20.24

Weight (kDa)

6.58

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	96 - 139	2.1e-13	Ring finger domain
zf-RING_11	PF17123	96 - 125	8.3e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	97 - 138	8.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	97 - 136	3.9e-06	RING-type zinc-finger
zf-rbx1	PF12678	106 - 139	4.2e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024442)

Species	Orthologous Gene IDs
malus_domestica	MD17G1035700.v1.1
prunus_persica	Prupe.3G282900_v2.0.a1
pyrus_communis	pycom17g03280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	147, 177, 204, 348, 510
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	2 cut(s)	174, 444
AdeI	CACNNNGTG	1 cut(s)	213
AfiI	CCNNNNNNNGG	2 cut(s)	347, 348
AgsI	TTSAA	2 cut(s)	313, 482
AleI	CACNNNNGTG	1 cut(s)	580
AluBI	AGCT	5 cut(s)	167, 241, 249, 263, 357
AluI	AGCT	5 cut(s)	167, 241, 249, 263, 357
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	3 cut(s)	174, 417, 444
ApaI	GGGCCC	1 cut(s)	421
ApeKI	GCWGC	4 cut(s)	26, 164, 167, 434
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	417, 418
AsuC2I	CCSGG	2 cut(s)	416, 448
AsuHPI	GGTGA	1 cut(s)	567
BaeGI	GKGCMC	3 cut(s)	354, 421, 570
BanII	GRGCYC	1 cut(s)	421
BbvI	GCAGC	4 cut(s)	38, 154, 176, 421
BccI	CCATC	1 cut(s)	310
BceAI	ACGGC	1 cut(s)	177
BcnI	CCSGG	2 cut(s)	416, 448
BfaI	CTAG	1 cut(s)	528
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	7 cut(s)	27, 148, 165, 168, 177, 204, 435
BlsI	GCNGC	7 cut(s)	28, 149, 166, 169, 178, 205, 436
Bme1390I	CCNGG	2 cut(s)	416, 448
BmgT120I	GGNCC	2 cut(s)	417, 418
BmiI	GGNNCC	2 cut(s)	202, 419
BmrFI	CCNGG	2 cut(s)	416, 448
BmsI	GCATC	3 cut(s)	367, 460, 514
BpuMI	CCSGG	2 cut(s)	416, 448
BsaJI	CCNNGG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 348
Bse118I	RCCGGY	3 cut(s)	179, 460, 473
Bse1I	ACTGG	2 cut(s)	195, 430
Bse3DI	GCAATG	3 cut(s)	48, 157, 367
BseDI	CCNNGG	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	347, 348
BseMI	GCAATG	3 cut(s)	48, 157, 367
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	2 cut(s)	195, 430
BseRI	GAGGAG	1 cut(s)	150
BseSI	GKGCMC	3 cut(s)	354, 421, 570
BseXI	GCAGC	4 cut(s)	38, 154, 176, 421
BsgI	GTGCAG	2 cut(s)	312, 349
BshFI	GGCC	3 cut(s)	176, 419, 446
BsiSI	CCGG	5 cut(s)	180, 415, 447, 461, 474
BslI	CCNNNNNNNGG	2 cut(s)	347, 348
BsnI	GGCC	3 cut(s)	176, 419, 446
Bsp120I	GGGCCC	1 cut(s)	417
Bsp1286I	GDGCHC	3 cut(s)	354, 421, 570
Bsp143I	GATC	3 cut(s)	48, 93, 111
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	5 cut(s)	147, 177, 204, 348, 510
BspANI	GGCC	3 cut(s)	176, 419, 446
BspCNI	CTCAG	1 cut(s)	571
BspLI	GGNNCC	2 cut(s)	202, 419
BspPI	GGATC	1 cut(s)	119
BsrDI	GCAATG	3 cut(s)	48, 157, 367
BsrFI	RCCGGY	3 cut(s)	179, 460, 473
BsrI	ACTGG	2 cut(s)	195, 430
BssAI	RCCGGY	3 cut(s)	179, 460, 473
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	3 cut(s)	48, 93, 111
BssT1I	CCWWGG	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	127
BstC8I	GCNNGC	6 cut(s)	181, 332, 350, 475, 512, 552
BstDEI	CTNAG	2 cut(s)	97, 579
BstDSI	CCRYGG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	3 cut(s)	51, 96, 114
BstMBI	GATC	3 cut(s)	48, 93, 111
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 173, 176, 327, 354, 443
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	414, 446
BstSLI	GKGCMC	3 cut(s)	354, 421, 570
BstV1I	GCAGC	4 cut(s)	38, 154, 176, 421
BsuRI	GGCC	3 cut(s)	176, 419, 446
BtgI	CCRYGG	1 cut(s)	171
BtsI	GCAGTG	2 cut(s)	300, 429
BtsIMutI	CAGTG	3 cut(s)	202, 300, 429
Cac8I	GCNNGC	6 cut(s)	181, 332, 350, 475, 512, 552
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	3 cut(s)	179, 460, 473
Cfr13I	GGNCC	2 cut(s)	417, 418
CviAII	CATG	5 cut(s)	55, 104, 172, 217, 362
DdeI	CTNAG	2 cut(s)	97, 579
DpnI	GATC	3 cut(s)	50, 95, 113
DpnII	GATC	3 cut(s)	48, 93, 111
DraIII	CACNNNGTG	1 cut(s)	213
EaeI	YGGCCR	2 cut(s)	174, 444
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	5 cut(s)	58, 107, 175, 220, 365
FaiI	YATR	7 cut(s)	56, 105, 173, 218, 252, 363, 412
FatI	CATG	5 cut(s)	54, 103, 171, 216, 361
FauI	CCCGC	2 cut(s)	341, 503
Fnu4HI	GCNGC	7 cut(s)	27, 148, 165, 168, 177, 204, 435
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	7 cut(s)	27, 148, 165, 168, 177, 204, 435
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	7 cut(s)	27, 148, 165, 168, 177, 204, 435
HaeIII	GGCC	3 cut(s)	176, 419, 446
HapII	CCGG	5 cut(s)	180, 415, 447, 461, 474
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	5 cut(s)	58, 107, 175, 220, 365
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	2 cut(s)	81, 493
HpaII	CCGG	5 cut(s)	180, 415, 447, 461, 474
HphI	GGTGA	1 cut(s)	567
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	2 cut(s)	131, 408
Hpy188III	TCNNGA	2 cut(s)	91, 313
Hpy8I	GTNNAC	1 cut(s)	535
HpyAV	CCTTC	1 cut(s)	445
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	4 cut(s)	26, 216, 293, 330
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 173, 176, 327, 354, 443
HpyF3I	CTNAG	2 cut(s)	97, 579
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	5 cut(s)	58, 107, 175, 220, 365
HspAI	GCGC	1 cut(s)	29
KroI	GCCGGC	2 cut(s)	179, 473
KroNI	GCCGGC	2 cut(s)	181, 475
Kzo9I	GATC	3 cut(s)	48, 93, 111
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	4 cut(s)	38, 154, 176, 421
LweI	GCATC	3 cut(s)	367, 460, 514
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	2 cut(s)	5, 573
MalI	GATC	3 cut(s)	50, 95, 113
MboI	GATC	3 cut(s)	48, 93, 111
MboII	GAAGA	2 cut(s)	43, 144
MhlI	GDGCHC	3 cut(s)	354, 421, 570
MluCI	AATT	3 cut(s)	12, 265, 482
MlyI	GAGTC	1 cut(s)	502
MnlI	CCTC	6 cut(s)	11, 114, 128, 131, 384, 540
MroNI	GCCGGC	2 cut(s)	179, 473
MseI	TTAA	2 cut(s)	158, 485
MslI	CAYNNNNRTG	2 cut(s)	519, 580
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	5 cut(s)	180, 415, 447, 461, 474
MspR9I	CCNGG	2 cut(s)	416, 448
MwoI	GCNNNNNNNGC	6 cut(s)	161, 173, 176, 327, 354, 443
NaeI	GCCGGC	2 cut(s)	181, 475
NciI	CCSGG	2 cut(s)	416, 448
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	3 cut(s)	48, 93, 111
NgoMIV	GCCGGC	2 cut(s)	179, 473
NlaIII	CATG	5 cut(s)	58, 107, 175, 220, 365
NlaIV	GGNNCC	2 cut(s)	202, 419
NmuCI	GTSAC	2 cut(s)	5, 573
NspI	RCATGY	1 cut(s)	220
OliI	CACNNNNGTG	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PdiI	GCCGGC	2 cut(s)	181, 475
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	7 cut(s)	28, 149, 166, 169, 178, 205, 436
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
PspN4I	GGNNCC	2 cut(s)	202, 419
PspOMI	GGGCCC	1 cut(s)	417
PspPI	GGNCC	2 cut(s)	417, 418
PvuII	CAGCTG	1 cut(s)	167
RseI	CAYNNNNRTG	2 cut(s)	519, 580
SaqAI	TTAA	2 cut(s)	158, 485
SatI	GCNGC	7 cut(s)	27, 148, 165, 168, 177, 204, 435
Sau3AI	GATC	3 cut(s)	48, 93, 111
Sau96I	GGNCC	2 cut(s)	417, 418
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	2 cut(s)	416, 448
SduI	GDGCHC	3 cut(s)	354, 421, 570
SetI	ASST	8 cut(s)	22, 169, 215, 243, 251, 265, 359, 580
SfaNI	GCATC	3 cut(s)	367, 460, 514
SmiMI	CAYNNNNRTG	2 cut(s)	519, 580
Sse9I	AATT	3 cut(s)	12, 265, 482
SsiI	CCGC	5 cut(s)	147, 177, 204, 348, 510
SspI	AATATT	1 cut(s)	66
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	414, 446
StyI	CCWWGG	1 cut(s)	171
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	221
TasI	AATT	3 cut(s)	12, 265, 482
TauI	GCSGC	3 cut(s)	150, 179, 206
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	158, 485
Tru9I	TTAA	2 cut(s)	158, 485
TscAI	CASTG	3 cut(s)	202, 300, 436
TseFI	GTSAC	2 cut(s)	5, 573
TseI	GCWGC	4 cut(s)	26, 164, 167, 434
Tsp45I	GTSAC	2 cut(s)	5, 573
TspDTI	ATGAA	1 cut(s)	43
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	3 cut(s)	202, 300, 436
XceI	RCATGY	1 cut(s)	220
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.