Prupe.3G287000_v2.0.a1
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0019552
Physical Location & Seq
Reverse (-)
25911701 .. 25914658
2958 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G287000.1

Sequence Viewer

Length: 603 bp
ATGGGGCTTACCTTCACGAAGCTCTTCAGCAGGCTCTTTGCCAAGAAAGAAATGCGAATTCTCATGGTGGGTCTCGATGCCGCTGGTAAGACGACCATATTGTATAAGCTCAAGCTCGGAGAAATTGTCACCACCATCCCTACCATTGGATTTAATGTGGAGACAGTAGAATATAAGAACATCAGCTTCACTGTGTGGGATGTGGGGGGTCAAGACAAAATCCGTCCATTGTGGAGGCACTACTTCCAGAACACACAAGGTCTTATTTTTGTGGTTGATAGCAATGATAGGGATCGAGTTGTTGAGGCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAACTGAGGGATGCTGTTCTGCTTGTATTTGCCAACAAACAAGATCTTCCTAATGCAATGAATGCCGCAGAAATAACTGATAAGCTTGGTCTTCATTCTCTCCGCCAACGTCACTGGTACATCCAGAGCACTTGTGCAACCTCTGGAGAGGGTCTGTACGAGGGGTTAGAATGGCTTTCCAACAACATTGCTAGCAAGGCAAGCATGAGAGTCAAGGTCAAGGAGTTTGGTTGCTTGACTTGGAGTTTCTGGGGAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

201

Amino Acids

22.88

Weight (kDa)

7.77

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019552)

Species Orthologous Gene IDs
prunus_persica Prupe.3G287000_v2.0.a1 Prupe.3G287000_v2.0.a1 Prupe.3G287000_v2.0.a1
pyrus_communis pycom111g02440
rosa_laevigata RLG00000022105
rosa_roxburghii Rroxscaffold_2G00079970
rosa_rugosa Rorug02G0558700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 81, 408, 445
AclWI GGATC 1 cut(s) 300
AcsI RAATTY 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 10
AdeI CACNNNGTG 1 cut(s) 195
AfaI GTAC 2 cut(s) 461, 500
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 334
AluBI AGCT 5 cut(s) 22, 109, 115, 186, 427
AluI AGCT 5 cut(s) 22, 109, 115, 186, 427
Alw21I GWGCWC 1 cut(s) 473
Alw26I GTCTC 2 cut(s) 77, 155
AlwI GGATC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 57
Asp700I GAANNNNTTC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 121
AsuNHI GCTAGC 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 473
BccI CCATC 1 cut(s) 143
BcoDI GTCTC 2 cut(s) 77, 155
BfaI CTAG 1 cut(s) 534
BglII AGATCT 1 cut(s) 385
BisI GCNGC 2 cut(s) 81, 408
BlsI GCNGC 2 cut(s) 82, 409
BmsI GCATC 2 cut(s) 67, 343
BmtI GCTAGC 1 cut(s) 537
BpiI GAAGAC 1 cut(s) 425
BpmI CTGGAG 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 461
Bse3DI GCAATG 3 cut(s) 289, 405, 528
Bse8I GATNNNNATC 1 cut(s) 291
BseGI GGATG 7 cut(s) 135, 205, 319, 333, 346, 358, 462
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMI GCAATG 3 cut(s) 289, 405, 528
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 1 cut(s) 461
BsiHKAI GWGCWC 1 cut(s) 473
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 77, 155
BsmI GAATGC 1 cut(s) 409
Bso31I GGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 473
Bsp143I GATC 2 cut(s) 292, 385
BspACI CCGC 3 cut(s) 81, 408, 445
BspCNI CTCAG 1 cut(s) 339
BspOI GCTAGC 1 cut(s) 537
BspPI GGATC 1 cut(s) 300
BspQI GCTCTTC 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 77
BsrDI GCAATG 3 cut(s) 289, 405, 528
BsrI ACTGG 1 cut(s) 461
BssMI GATC 2 cut(s) 292, 385
Bst4CI ACNGT 2 cut(s) 166, 193
Bst6I CTCTTC 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 3 cut(s) 32, 535, 544
BstDEI CTNAG 1 cut(s) 347
BstF5I GGATG 7 cut(s) 135, 205, 319, 333, 346, 358, 462
BstKTI GATC 2 cut(s) 295, 388
BstMAI GTCTC 2 cut(s) 77, 155
BstMBI GATC 2 cut(s) 292, 385
BstMWI GCNNNNNNNGC 3 cut(s) 404, 539, 543
BstV2I GAAGAC 1 cut(s) 425
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BtsCI GGATG 7 cut(s) 135, 205, 319, 333, 346, 358, 462
BtsIMutI CAGTG 2 cut(s) 189, 454
Cac8I GCNNGC 3 cut(s) 32, 535, 544
Csp6I GTAC 2 cut(s) 460, 499
CviAII CATG 2 cut(s) 64, 547
CviJI RGCY 8 cut(s) 7, 22, 34, 109, 115, 186, 427, 517
CviKI_1 RGCY 8 cut(s) 7, 22, 34, 109, 115, 186, 427, 517
CviQI GTAC 2 cut(s) 460, 499
DdeI CTNAG 1 cut(s) 347
DpnI GATC 2 cut(s) 294, 387
DpnII GATC 2 cut(s) 292, 385
DraIII CACNNNGTG 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
EciI GGCGGA 1 cut(s) 434
Eco31I GGTCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 57
FaeI CATG 2 cut(s) 67, 550
FaiI YATR 6 cut(s) 65, 98, 105, 174, 324, 548
FatI CATG 2 cut(s) 63, 546
Fnu4HI GCNGC 2 cut(s) 81, 408
FokI GGATG 7 cut(s) 122, 212, 326, 340, 353, 365, 449
Fsp4HI GCNGC 2 cut(s) 81, 408
FspBI CTAG 1 cut(s) 534
GluI GCNGC 2 cut(s) 81, 408
GsuI CTGGAG 1 cut(s) 507
Hin1II CATG 2 cut(s) 67, 550
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 1 cut(s) 552
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 6 cut(s) 16, 74, 212, 247, 466, 486
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 166, 193
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 3 cut(s) 322, 398, 479
HpyF10VI GCNNNNNNNGC 3 cut(s) 404, 539, 543
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 1 cut(s) 451
Hsp92II CATG 2 cut(s) 67, 550
Kzo9I GATC 2 cut(s) 292, 385
LguI GCTCTTC 1 cut(s) 29
LpnPI CCDG 7 cut(s) 16, 69, 260, 442, 471, 479, 577
LweI GCATC 2 cut(s) 67, 343
MaeI CTAG 1 cut(s) 534
MaeII ACGT 1 cut(s) 451
MaeIII GTNAC 2 cut(s) 127, 452
MalI GATC 2 cut(s) 294, 387
MboI GATC 2 cut(s) 292, 385
MboII GAAGA 3 cut(s) 16, 380, 425
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 473
MluCI AATT 3 cut(s) 57, 123, 317
MlyI GAGTC 1 cut(s) 561
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 8 cut(s) 228, 298, 331, 342, 484, 493, 496, 590
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 409
MwoI GCNNNNNNNGC 3 cut(s) 404, 539, 543
NdeII GATC 2 cut(s) 292, 385
NheI GCTAGC 1 cut(s) 533
NlaIII CATG 2 cut(s) 67, 550
NmuCI GTSAC 2 cut(s) 127, 452
PciSI GCTCTTC 1 cut(s) 29
PctI GAATGC 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 82, 409
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 2 cut(s) 461, 500
RsaNI GTAC 2 cut(s) 460, 499
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 81, 408
Sau3AI GATC 2 cut(s) 292, 385
SchI GAGTC 1 cut(s) 561
SduI GDGCHC 1 cut(s) 473
SfaNI GCATC 2 cut(s) 67, 343
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 3 cut(s) 57, 123, 317
SsiI CCGC 3 cut(s) 81, 408, 445
SspMI CTAG 1 cut(s) 534
TaaI ACNGT 2 cut(s) 166, 193
TaiI ACGT 1 cut(s) 454
TaqI TCGA 2 cut(s) 75, 295
TasI AATT 3 cut(s) 57, 123, 317
TauI GCSGC 2 cut(s) 83, 410
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 2 cut(s) 196, 461
TseFI GTSAC 2 cut(s) 127, 452
Tsp45I GTSAC 2 cut(s) 127, 452
TspDTI ATGAA 4 cut(s) 330, 357, 416, 425
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 196, 461
XapI RAATTY 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.