Rorug02G0558700
MYB Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000692
Physical Location & Seq
Reverse (-)
68468410 .. 68472880
4471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0558700.1

Sequence Viewer

Length: 1068 bp
ATGGGAGTCAAGGACAAGAAGAAGACCAAGAAGAACAAGGAGCTTGCCCAGAAAAATTTGGAGCCTGTTGAAAAGGATAAAAAGGCAGGACCTTCAGAGATGAGAAAGAGAAAAAGAGACAAGGAAAACAATGGTGATTCGAGAAGAGTTGTTCAGATCTCTATTGAAGATAACACTCCTAAAGCAGCTAATGACAAGACAAAGACAAAGAAACTGAGGAAAGGAAAAGTAAAGAAGGTGAAGAACAATCAGGATTTGGATGATCCCTCTAATACCGATGGTTTTGATGAATTAAATGACGATGAAGCAGCAGATGATCAGAGCCAATTAGCAATTCAGGGAGGGACTGGAAGTGCTGAAATGGTGCTCAATGAAGATGATCGTAACTCAAAGAAAGCTAGGAAAAAGAAAAAGAAGAATCGTGATTCCTTGGAAGGTGGGAAGTTACTGGAAAAGAGAGTGGAAGCTGTTCGAGATGAACTTTGTCATCTCTCTTCAGTGGATGAGGACTGCTCAAGAGAAATAACAAGCATATCCAAGAAATCTCAGAAAAAGAAAAGGAGGGATATGGATTCATCAAAACCTAAGAAGTCATTGGAAAAGAAAGAAGAAGCTAATCAGGAGGATGTTTACCTTATCTCCTCTGAGGATGAGGGCAGCCCGAGAGGAATGAAAAAATGGATTATGGAATACCAGCAAAATAGACCTGGATTGAAGGTACTGCAGCAAAGAATTGATGAGTTCATTATTGCACATGAGGCAAAATTGGAACAGGAAAGAAAAGAAAGAGAAGCCCTTTCTGCTGAGGAGGGATGGCAACTTGTACAACATCATAAAGGAAGGAAGAAAACCAAGGATGCTGATGGAATTACAGTAGGCTCTGTTGCCCAGGCTGTTGTGGAGAGCAAGAGAGCCAAGAAGAAGAATACAGATGTTGGGCTAGACTTTTACCGGTTTCAAAGGAAAGAAGCTCAGAGGAATGAAATTATGATGCTTCAGAGCAAATTTGAGCAGGATAAAAAGCGGATACAGCAGATAAGAGCAGCAAGGAAATTCAAGCCATACTGA

Protein Analysis

355

Amino Acids

40.95

Weight (kDa)

9.65

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP7 PF12923 233 - 355 9.4e-26 Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1024
AclWI GGATC 1 cut(s) 257
AcsI RAATTY 3 cut(s) 55, 1004, 1052
AcuI CTGAAG 3 cut(s) 78, 480, 980
AfaI GTAC 2 cut(s) 720, 825
AgeI ACCGGT 1 cut(s) 951
AgsI TTSAA 5 cut(s) 71, 167, 715, 959, 1057
AjnI CCWGG 2 cut(s) 706, 888
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 6 cut(s) 43, 188, 398, 467, 614, 971
AluI AGCT 6 cut(s) 43, 188, 398, 467, 614, 971
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 661
ApeKI GCWGC 5 cut(s) 185, 308, 657, 724, 1043
ApoI RAATTY 3 cut(s) 55, 1004, 1052
AsiGI ACCGGT 1 cut(s) 951
Asp700I GAANNNNTTC 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 146, 250
AvaI CYCGRG 1 cut(s) 661
AvaII GGWCC 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 369
BbvCI CCTCAGC 1 cut(s) 804
BbvI GCAGC 5 cut(s) 197, 320, 669, 736, 1055
BccI CCATC 3 cut(s) 272, 807, 857
BciT130I CCWGG 2 cut(s) 708, 890
BciVI GTATCC 1 cut(s) 1020
BclI TGATCA 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 2 cut(s) 399, 941
BfmI CTRYAG 1 cut(s) 722
BfuI GTATCC 1 cut(s) 1020
BglII AGATCT 1 cut(s) 156
BisI GCNGC 5 cut(s) 186, 309, 658, 725, 1044
BlsI GCNGC 5 cut(s) 187, 310, 659, 726, 1045
Bme1390I CCNGG 2 cut(s) 708, 890
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 661
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 2 cut(s) 708, 890
BmsI GCATC 2 cut(s) 847, 981
BpiI GAAGAC 1 cut(s) 29
BplI GAGNNNNNCTC 2 cut(s) 497, 529
Bpu10I CCTNAGC 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 499
BsaJI CCNNGG 3 cut(s) 429, 852, 888
BsaWI WCCGGW 1 cut(s) 951
BsaXI ACNNNNNCTCC 2 cut(s) 623, 653
Bse118I RCCGGY 1 cut(s) 951
Bse1I ACTGG 2 cut(s) 352, 453
BseBI CCWGG 2 cut(s) 708, 890
BseDI CCNNGG 3 cut(s) 429, 852, 888
BseGI GGATG 6 cut(s) 265, 508, 631, 655, 818, 862
BseMII CTCAG 5 cut(s) 206, 560, 636, 795, 986
BseNI ACTGG 2 cut(s) 352, 453
BseRI GAGGAG 2 cut(s) 631, 821
BseXI GCAGC 5 cut(s) 197, 320, 669, 736, 1055
BshTI ACCGGT 1 cut(s) 951
BsiHKAI GWGCWC 1 cut(s) 369
BsiHKCI CYCGRG 1 cut(s) 661
BsiSI CCGG 1 cut(s) 952
BslFI GGGAC 1 cut(s) 358
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 358
BsoBI CYCGRG 1 cut(s) 661
Bsp1286I GDGCHC 1 cut(s) 369
Bsp1407I TGTACA 1 cut(s) 823
Bsp143I GATC 4 cut(s) 156, 262, 316, 379
BspACI CCGC 1 cut(s) 1024
BspCNI CTCAG 5 cut(s) 207, 559, 637, 796, 985
BspLI GGNNCC 1 cut(s) 63
BspMAI CTGCAG 1 cut(s) 726
BspPI GGATC 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 951
BsrGI TGTACA 1 cut(s) 823
BsrI ACTGG 2 cut(s) 352, 453
BssAI RCCGGY 1 cut(s) 951
BssECI CCNNGG 3 cut(s) 429, 852, 888
BssMI GATC 4 cut(s) 156, 262, 316, 379
BssT1I CCWWGG 2 cut(s) 429, 852
Bst2UI CCWGG 2 cut(s) 708, 890
Bst4CI ACNGT 1 cut(s) 874
Bst6I CTCTTC 2 cut(s) 139, 499
BstAUI TGTACA 1 cut(s) 823
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 6 cut(s) 215, 546, 585, 645, 804, 972
BstF5I GGATG 6 cut(s) 265, 508, 631, 655, 818, 862
BstKTI GATC 4 cut(s) 159, 265, 319, 382
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 4 cut(s) 156, 262, 316, 379
BstMWI GCNNNNNNNGC 3 cut(s) 758, 800, 1030
BstNI CCWGG 2 cut(s) 708, 890
BstSCI CCNGG 2 cut(s) 706, 888
BstSFI CTRYAG 1 cut(s) 722
BstV1I GCAGC 5 cut(s) 197, 320, 669, 736, 1055
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuI GTATCC 1 cut(s) 1020
BtsCI GGATG 6 cut(s) 265, 508, 631, 655, 818, 862
BtsIMutI CAGTG 1 cut(s) 504
Cac8I GCNNGC 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 951
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 2 cut(s) 719, 824
CspAI ACCGGT 1 cut(s) 951
CviAII CATG 1 cut(s) 755
CviQI GTAC 2 cut(s) 719, 824
DdeI CTNAG 6 cut(s) 215, 546, 585, 645, 804, 972
DpnI GATC 4 cut(s) 158, 264, 318, 381
DpnII GATC 4 cut(s) 156, 262, 316, 379
Eam1104I CTCTTC 2 cut(s) 139, 499
EarI CTCTTC 2 cut(s) 139, 499
Eco130I CCWWGG 2 cut(s) 429, 852
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 3 cut(s) 78, 480, 980
Eco88I CYCGRG 1 cut(s) 661
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 2 cut(s) 706, 888
EcoT14I CCWWGG 2 cut(s) 429, 852
ErhI CCWWGG 2 cut(s) 429, 852
FaeI CATG 1 cut(s) 758
FaiI YATR 7 cut(s) 533, 569, 686, 756, 834, 989, 1063
FaqI GGGAC 1 cut(s) 358
FatI CATG 1 cut(s) 754
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 5 cut(s) 186, 309, 658, 725, 1044
FokI GGATG 6 cut(s) 272, 515, 638, 662, 825, 869
Fsp4HI GCNGC 5 cut(s) 186, 309, 658, 725, 1044
FspBI CTAG 2 cut(s) 399, 941
GluI GCNGC 5 cut(s) 186, 309, 658, 725, 1044
HapII CCGG 1 cut(s) 952
Hin1II CATG 1 cut(s) 758
HinfI GANTC 5 cut(s) 6, 137, 418, 425, 572
HpaII CCGG 1 cut(s) 952
HphI GGTGA 2 cut(s) 146, 250
Hpy166II GTNNAC 1 cut(s) 631
Hpy188I TCNGA 7 cut(s) 97, 156, 321, 549, 646, 975, 999
Hpy188III TCNNGA 6 cut(s) 141, 251, 422, 473, 516, 620
Hpy8I GTNNAC 1 cut(s) 631
HpyAV CCTTC 5 cut(s) 102, 229, 428, 709, 834
HpyCH4III ACNGT 1 cut(s) 874
HpyCH4V TGCA 2 cut(s) 724, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 758, 800, 1030
HpyF3I CTNAG 6 cut(s) 215, 546, 585, 645, 804, 972
Hsp92II CATG 1 cut(s) 758
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 4 cut(s) 156, 262, 316, 379
LmnI GCTCC 2 cut(s) 40, 61
Lsp1109I GCAGC 5 cut(s) 197, 320, 669, 736, 1055
LweI GCATC 2 cut(s) 847, 981
MaeI CTAG 2 cut(s) 399, 941
MaeIII GTNAC 2 cut(s) 383, 444
MalI GATC 4 cut(s) 158, 264, 318, 381
MboI GATC 4 cut(s) 156, 262, 316, 379
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 369
MlyI GAGTC 1 cut(s) 15
MroXI GAANNNNTTC 1 cut(s) 468
MseI TTAA 1 cut(s) 293
MspI CCGG 1 cut(s) 952
MspR9I CCNGG 2 cut(s) 708, 890
MvaI CCWGG 2 cut(s) 708, 890
MwoI GCNNNNNNNGC 3 cut(s) 758, 800, 1030
NdeII GATC 4 cut(s) 156, 262, 316, 379
NlaIII CATG 1 cut(s) 758
NlaIV GGNNCC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 4 cut(s) 137, 418, 425, 572
PinAI ACCGGT 1 cut(s) 951
PkrI GCNGC 5 cut(s) 187, 310, 659, 726, 1045
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 2 cut(s) 706, 888
PspGI CCWGG 2 cut(s) 706, 888
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 89
PspPPI RGGWCCY 1 cut(s) 89
PstI CTGCAG 1 cut(s) 726
PsuI RGATCY 1 cut(s) 156
RsaI GTAC 2 cut(s) 720, 825
RsaNI GTAC 2 cut(s) 719, 824
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 5 cut(s) 186, 309, 658, 725, 1044
Sau3AI GATC 4 cut(s) 156, 262, 316, 379
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 1 cut(s) 15
ScrFI CCNGG 2 cut(s) 708, 890
SduI GDGCHC 1 cut(s) 369
SfaNI GCATC 2 cut(s) 847, 981
SfcI CTRYAG 1 cut(s) 722
SinI GGWCC 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 514
SmoI CTYRAG 1 cut(s) 514
SsiI CCGC 1 cut(s) 1024
SspMI CTAG 2 cut(s) 399, 941
StyD4I CCNGG 2 cut(s) 706, 888
StyI CCWWGG 2 cut(s) 429, 852
TaaI ACNGT 1 cut(s) 874
TaqI TCGA 2 cut(s) 140, 472
TatI WGTACW 1 cut(s) 823
TfiI GAWTC 4 cut(s) 137, 418, 425, 572
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 1 cut(s) 504
TseI GCWGC 5 cut(s) 185, 308, 657, 724, 1043
TspDTI ATGAA 8 cut(s) 303, 318, 387, 492, 564, 686, 733, 996
TspRI CASTG 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 3 cut(s) 55, 1004, 1052
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 2 cut(s) 399, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.