RchiOBHm_Chr2g0128121
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000692
Physical Location & Seq
Forward (+)
43036203 .. 43036481
279 bp
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UTR
Exon/CDS
Intron
PRQ49992

Sequence Viewer

Length: 279 bp
ATGACTCTGCTCAACCCTAACTTCACAAACACATGCTATTATATGAGCACTTGGTTCCAAAATGATGACCCTATGCCATTTAACATGGCATATGGGATGACATTTTGGGACTACATCACCCAGGAGCCAAGTCGTGCCAACCTTTTCAATGTTGCCATGGCTAGTGATACTCGTTTGATGACCAGCGTGTCACTTATAGAGTGCAAGGGGGTATTCGAGGGATTGAAATCATTAGTTGATATTGGGGGTGTTAGATCTCTCATTGAGGTTTATCCTTGA

Protein Analysis

92

Amino Acids

10.51

Weight (kDa)

4.36

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 14 - 83 3.6e-09 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 187
AgsI TTSAA 2 cut(s) 148, 226
AjnI CCWGG 1 cut(s) 120
Alw21I GWGCWC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 122
BfaI CTAG 1 cut(s) 162
BglII AGATCT 1 cut(s) 254
Bme1390I CCNGG 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 56, 126
BmrFI CCNGG 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 120, 156
Bse8I GATNNNNATC 1 cut(s) 226
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 120, 156
BseGI GGATG 1 cut(s) 102
BseJI GATNNNNATC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 50
BslFI GGGAC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 254
Bsp19I CCATGG 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 56, 126
BssECI CCNNGG 2 cut(s) 120, 156
BssMI GATC 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 122
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 102
BstKTI GATC 1 cut(s) 257
BstMBI GATC 1 cut(s) 254
BstNI CCWGG 1 cut(s) 122
BstNSI RCATGY 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 102
CviAII CATG 3 cut(s) 33, 85, 157
CviJI RGCY 2 cut(s) 127, 161
CviKI_1 RGCY 2 cut(s) 127, 161
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
DrdI GACNNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 3 cut(s) 36, 88, 160
FaiI YATR 9 cut(s) 34, 42, 44, 74, 86, 91, 93, 158, 197
FaqI GGGAC 1 cut(s) 122
FatI CATG 3 cut(s) 32, 84, 156
FauNDI CATATG 1 cut(s) 91
FokI GGATG 1 cut(s) 109
FspBI CTAG 1 cut(s) 162
Hin1II CATG 3 cut(s) 36, 88, 160
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 204
Hsp92II CATG 3 cut(s) 36, 88, 160
Kzo9I GATC 1 cut(s) 254
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 3 cut(s) 107, 134, 196
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 189
MalI GATC 1 cut(s) 256
MboI GATC 1 cut(s) 254
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 50
MnlI CCTC 2 cut(s) 211, 259
MseI TTAA 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 122
NcoI CCATGG 1 cut(s) 156
NdeI CATATG 1 cut(s) 91
NdeII GATC 1 cut(s) 254
NlaIII CATG 3 cut(s) 36, 88, 160
NlaIV GGNNCC 2 cut(s) 56, 126
NmuCI GTSAC 1 cut(s) 189
NspI RCATGY 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 56, 126
PsuI RGATCY 1 cut(s) 254
SaqAI TTAA 1 cut(s) 81
Sau3AI GATC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 1 cut(s) 50
SetI ASST 2 cut(s) 144, 270
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 156
TaqI TCGA 1 cut(s) 216
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseFI GTSAC 1 cut(s) 189
Tsp45I GTSAC 1 cut(s) 189
XceI RCATGY 1 cut(s) 36
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.