Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000692

Physical Location & Seq

Genomic Coordinates Reverse (-)

15132151 .. 15133790

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1048400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGTTTGAATAATGGTGAAGTGGGTGCTATTAGCCATGAGCTTCTTGGAGCTCAAGCACATGTTTGGAACCACATGTTCCAGTTCATAAACTCCATGTCACTCAAATGTGCAGTTCAACTAGGCATCCCAGACGTGATTCACAACCACGGCCAACCCATCTCTCTTTCCGAGCTCGTCGCCAGGCTCAATATCCACCCTTCGAAAGCTCATTTCATGTCACGCCTCATGCGGATCCTCGTTCACTCCGATTTCTTTGCACAACATGATCATGTTCATCATGATCGTGACGATGCGGAGGAAGAAGTGGCTGTTGTGTTGTATAGCCTAACACCAGCTTCCGGGCTTTTTCTCAAAGACGGACCATTAAACACCACACCGTTTTTGCTCATGATACTTGATCAGGTAATTACAGACCCATTTCACTCAATGGGTAATTGGTTACAGATGAATTGTGGCGATGATCTAGTTCCATGTACACCATTTGAGGTGGCAAATGGAATGCCTTTTTGGGAATTGAGTGCCAAGAAACCGAGGTTTGGTGACTTGTTCAATGAAGCAATGGAGGCGGACTCCAAGCTTATCGCTGGGGTGGTGGTAGAAGAGTGTGGAGGAGTCTTTGAGGGTTTGAAATCCCTGGTGGATGTTGGAGGGGGTACAGGAACAATGGCCAAGGCCATTGCCAATGCATTTCCCAACATCAACTGCACTGTGTTTGACCAGCCACATGTGGTGGCTGACTTGGAAGGGATGACCCACAATTTGGGATTTGTGGGAGGAGACATGTTTGAGGAAATACCTCCAGCCAATGCAATTCTGCTCAAGTGGATTTTGCATGATTGGAATGATGAAGAAAGCGTGAAGATATTGAAGAAATGTAGAGAAGCAATATTTCTGAACAAAAATGAGGGAAGGAAGAAGAAGATTATCATCATAGACATAGTTGTGGGGTATGCCGATAACAAGACGAAGGTGGACAAGAAATCAATTGAAACCCAACTCATGTTCGATATGTTGATGATGTCCACCATCACTGGCAAAGAGCGTAGCGAATCAGAATGGGAGAAGATCTTTTTGGCTGCTGGATTCTCTCATTATAACATCACTCATATGCTCGGTTTGAGGTCTCTTATTGAAGTTTACCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0033799 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

383

Amino Acids

42.54

Weight (kDa)

5.39

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	23 - 120	1e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	145 - 364	4.3e-50	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26800 FvH4_6g26810
malus_domestica	MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica	Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis	pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis	RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata	RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora	Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa	Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha	Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana	Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1098
AccB7I	CCANNNNNTGG	1 cut(s)	763
AciI	CCGC	3 cut(s)	232, 296, 569
AclWI	GGATC	2 cut(s)	229, 242
AcoI	YGGCCR	2 cut(s)	151, 669
AfaI	GTAC	2 cut(s)	478, 658
AfiI	CCNNNNNNNGG	3 cut(s)	341, 539, 763
AflIII	ACRYGT	4 cut(s)	61, 75, 727, 783
AgsI	TTSAA	7 cut(s)	10, 119, 553, 631, 871, 992, 1136
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	182, 636
AjuI	GAANNNNNNNTTGG	4 cut(s)	493, 525, 1058, 1090
AluBI	AGCT	6 cut(s)	43, 53, 175, 209, 338, 580
AluI	AGCT	6 cut(s)	43, 53, 175, 209, 338, 580
Alw21I	GWGCWC	2 cut(s)	55, 177
Alw26I	GTCTC	2 cut(s)	774, 1131
AlwI	GGATC	2 cut(s)	229, 242
AoxI	GGCC	3 cut(s)	151, 669, 675
ApeKI	GCWGC	1 cut(s)	1079
ArsI	GACNNNNNNTTYG	2 cut(s)	745, 777
AspS9I	GGNCC	1 cut(s)	362
AsuC2I	CCSGG	1 cut(s)	343
AsuHPI	GGTGA	2 cut(s)	29, 554
AsuII	TTCGAA	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	362
BalI	TGGCCA	1 cut(s)	671
BamHI	GGATCC	1 cut(s)	234
BanII	GRGCYC	2 cut(s)	55, 177
Bbv12I	GWGCWC	2 cut(s)	55, 177
BbvI	GCAGC	1 cut(s)	1066
BccI	CCATC	2 cut(s)	167, 1037
BceAI	ACGGC	1 cut(s)	166
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	2 cut(s)	184, 638
BclI	TGATCA	2 cut(s)	268, 400
BcnI	CCSGG	1 cut(s)	343
BcoDI	GTCTC	2 cut(s)	774, 1131
BfaI	CTAG	2 cut(s)	122, 467
BglII	AGATCT	1 cut(s)	1068
BisI	GCNGC	1 cut(s)	1080
BlsI	GCNGC	1 cut(s)	1081
Bme1390I	CCNGG	3 cut(s)	184, 343, 638
Bme18I	GGWCC	1 cut(s)	362
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	71, 236
BmrFI	CCNGG	3 cut(s)	184, 343, 638
BmsI	GCATC	2 cut(s)	135, 283
BplI	GAGNNNNNCTC	2 cut(s)	557, 589
BpmI	CTGGAG	1 cut(s)	786
Bpu14I	TTCGAA	1 cut(s)	203
BpuEI	CTTGAG	2 cut(s)	39, 806
BpuMI	CCSGG	1 cut(s)	343
BsaBI	GATNNNNATC	1 cut(s)	929
BsaI	GGTCTC	1 cut(s)	1131
BsaJI	CCNNGG	4 cut(s)	148, 533, 636, 672
Bsc4I	CCNNNNNNNGG	3 cut(s)	341, 539, 763
Bse1I	ACTGG	2 cut(s)	82, 1039
Bse3DI	GCAATG	2 cut(s)	567, 678
Bse8I	GATNNNNATC	1 cut(s)	929
BseBI	CCWGG	2 cut(s)	184, 638
BseDI	CCNNGG	4 cut(s)	148, 533, 636, 672
BseGI	GGATG	3 cut(s)	126, 649, 756
BseJI	GATNNNNATC	1 cut(s)	929
BseLI	CCNNNNNNNGG	3 cut(s)	341, 539, 763
BseMI	GCAATG	2 cut(s)	567, 678
BseNI	ACTGG	2 cut(s)	82, 1039
BseRI	GAGGAG	2 cut(s)	627, 792
BseXI	GCAGC	1 cut(s)	1066
BseYI	CCCAGC	1 cut(s)	587
BsgI	GTGCAG	2 cut(s)	132, 691
BshFI	GGCC	3 cut(s)	153, 671, 677
BsiHKAI	GWGCWC	2 cut(s)	55, 177
BsiSI	CCGG	1 cut(s)	342
BslI	CCNNNNNNNGG	3 cut(s)	341, 539, 763
BsmAI	GTCTC	2 cut(s)	774, 1131
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	3 cut(s)	153, 671, 677
Bso31I	GGTCTC	1 cut(s)	1131
Bsp119I	TTCGAA	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	55, 177
Bsp1407I	TGTACA	1 cut(s)	476
Bsp143I	GATC	6 cut(s)	234, 268, 283, 400, 463, 1068
BspACI	CCGC	3 cut(s)	232, 296, 569
BspANI	GGCC	3 cut(s)	153, 671, 677
BspHI	TCATGA	2 cut(s)	280, 390
BspLI	GGNNCC	2 cut(s)	71, 236
BspPI	GGATC	2 cut(s)	229, 242
BspT104I	TTCGAA	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	1131
BsrDI	GCAATG	2 cut(s)	567, 678
BsrGI	TGTACA	1 cut(s)	476
BsrI	ACTGG	2 cut(s)	82, 1039
BssECI	CCNNGG	4 cut(s)	148, 533, 636, 672
BssMI	GATC	6 cut(s)	234, 268, 283, 400, 463, 1068
BssT1I	CCWWGG	1 cut(s)	672
Bst2UI	CCWGG	2 cut(s)	184, 638
Bst4CI	ACNGT	2 cut(s)	381, 712
Bst6I	CTCTTC	1 cut(s)	597
BstAUI	TGTACA	1 cut(s)	476
BstBI	TTCGAA	1 cut(s)	203
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	3 cut(s)	126, 649, 756
BstKTI	GATC	6 cut(s)	237, 271, 286, 403, 466, 1071
BstMAI	GTCTC	2 cut(s)	774, 1131
BstMBI	GATC	6 cut(s)	234, 268, 283, 400, 463, 1068
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstNI	CCWGG	2 cut(s)	184, 638
BstNSI	RCATGY	4 cut(s)	65, 79, 731, 787
BstSCI	CCNGG	3 cut(s)	182, 341, 636
BstV1I	GCAGC	1 cut(s)	1066
BstX2I	RGATCY	2 cut(s)	234, 1068
BstYI	RGATCY	2 cut(s)	234, 1068
BsuRI	GGCC	3 cut(s)	153, 671, 677
BtgI	CCRYGG	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	474
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	3 cut(s)	126, 649, 756
BtsIMutI	CAGTG	2 cut(s)	708, 1032
CciI	TCATGA	2 cut(s)	280, 390
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	477, 657
CviQI	GTAC	2 cut(s)	477, 657
DpnI	GATC	6 cut(s)	236, 270, 285, 402, 465, 1070
DpnII	GATC	6 cut(s)	234, 268, 283, 400, 463, 1068
EaeI	YGGCCR	2 cut(s)	151, 669
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
EciI	GGCGGA	1 cut(s)	584
Ecl136II	GAGCTC	2 cut(s)	53, 175
Eco130I	CCWWGG	1 cut(s)	672
Eco24I	GRGCYC	2 cut(s)	55, 177
Eco31I	GGTCTC	1 cut(s)	1131
Eco47I	GGWCC	1 cut(s)	362
Eco53kI	GAGCTC	2 cut(s)	53, 175
EcoICRI	GAGCTC	2 cut(s)	53, 175
EcoRII	CCWGG	2 cut(s)	182, 636
EcoT14I	CCWWGG	1 cut(s)	672
EcoT22I	ATGCAT	1 cut(s)	691
EcoT38I	GRGCYC	2 cut(s)	55, 177
ErhI	CCWWGG	1 cut(s)	672
FauNDI	CATATG	1 cut(s)	1110
FbaI	TGATCA	2 cut(s)	268, 400
Fnu4HI	GCNGC	1 cut(s)	1080
FokI	GGATG	3 cut(s)	113, 656, 763
FriOI	GRGCYC	2 cut(s)	55, 177
Fsp4HI	GCNGC	1 cut(s)	1080
FspBI	CTAG	2 cut(s)	122, 467
GluI	GCNGC	1 cut(s)	1080
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	786
HaeIII	GGCC	3 cut(s)	153, 671, 677
HapII	CCGG	1 cut(s)	342
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	5 cut(s)	139, 572, 615, 1052, 1086
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	2 cut(s)	29, 554
Hpy166II	GTNNAC	5 cut(s)	244, 479, 976, 1026, 1141
Hpy188I	TCNGA	4 cut(s)	172, 250, 897, 1057
Hpy188III	TCNNGA	3 cut(s)	281, 287, 391
Hpy8I	GTNNAC	5 cut(s)	244, 479, 976, 1026, 1141
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	4 cut(s)	210, 740, 906, 964
HpyCH4III	ACNGT	2 cut(s)	381, 712
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	6 cut(s)	113, 260, 689, 708, 812, 835
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpySE526I	ACGT	1 cut(s)	135
Ksp22I	TGATCA	2 cut(s)	268, 400
Kzo9I	GATC	6 cut(s)	234, 268, 283, 400, 463, 1068
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	1 cut(s)	1066
LweI	GCATC	2 cut(s)	135, 283
MaeI	CTAG	2 cut(s)	122, 467
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	5 cut(s)	99, 219, 287, 441, 542
MalI	GATC	6 cut(s)	236, 270, 285, 402, 465, 1070
MboI	GATC	6 cut(s)	234, 268, 283, 400, 463, 1068
MboII	GAAGA	9 cut(s)	314, 614, 863, 874, 883, 928, 931, 934, 1078
MfeI	CAATTG	1 cut(s)	987
MflI	RGATCY	2 cut(s)	234, 1068
MhlI	GDGCHC	2 cut(s)	55, 177
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	7 cut(s)	408, 436, 451, 515, 760, 813, 987
MluNI	TGGCCA	1 cut(s)	671
MlyI	GAGTC	2 cut(s)	566, 624
MmeI	TCCRAC	1 cut(s)	628
Mox20I	TGGCCA	1 cut(s)	671
Mph1103I	ATGCAT	1 cut(s)	691
MscI	TGGCCA	1 cut(s)	671
MseI	TTAA	1 cut(s)	368
MslI	CAYNNNNRTG	5 cut(s)	106, 270, 285, 944, 1109
Msp20I	TGGCCA	1 cut(s)	671
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	3 cut(s)	184, 343, 638
MunI	CAATTG	1 cut(s)	987
Mva1269I	GAATGC	1 cut(s)	507
MvaI	CCWGG	2 cut(s)	184, 638
MwoI	GCNNNNNNNGC	1 cut(s)	566
NciI	CCSGG	1 cut(s)	343
NdeI	CATATG	1 cut(s)	1110
NdeII	GATC	6 cut(s)	234, 268, 283, 400, 463, 1068
NlaIV	GGNNCC	2 cut(s)	71, 236
NmuCI	GTSAC	4 cut(s)	99, 219, 287, 542
NsiI	ATGCAT	1 cut(s)	691
NspI	RCATGY	4 cut(s)	65, 79, 731, 787
NspV	TTCGAA	1 cut(s)	203
PagI	TCATGA	2 cut(s)	280, 390
PciI	ACATGT	4 cut(s)	61, 75, 727, 783
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	1 cut(s)	507
PfeI	GAWTC	3 cut(s)	139, 1052, 1086
PflMI	CCANNNNNTGG	1 cut(s)	763
PkrI	GCNGC	1 cut(s)	1081
PleI	GAGTC	2 cut(s)	566, 623
PpsI	GAGTC	2 cut(s)	566, 623
PscI	ACATGT	4 cut(s)	61, 75, 727, 783
PsiI	TTATAA	1 cut(s)	1098
Psp124BI	GAGCTC	2 cut(s)	55, 177
Psp6I	CCWGG	2 cut(s)	182, 636
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	2 cut(s)	182, 636
PspN4I	GGNNCC	2 cut(s)	71, 236
PspPI	GGNCC	1 cut(s)	362
PsuI	RGATCY	2 cut(s)	234, 1068
RsaI	GTAC	2 cut(s)	478, 658
RsaNI	GTAC	2 cut(s)	477, 657
RseI	CAYNNNNRTG	5 cut(s)	106, 270, 285, 944, 1109
SacI	GAGCTC	2 cut(s)	55, 177
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	1 cut(s)	1080
Sau3AI	GATC	6 cut(s)	234, 268, 283, 400, 463, 1068
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	2 cut(s)	566, 624
ScrFI	CCNGG	3 cut(s)	184, 343, 638
SduI	GDGCHC	2 cut(s)	55, 177
SfaNI	GCATC	2 cut(s)	135, 283
SfuI	TTCGAA	1 cut(s)	203
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	5 cut(s)	106, 270, 285, 944, 1109
SmlI	CTYRAG	2 cut(s)	54, 821
SmoI	CTYRAG	2 cut(s)	54, 821
Sse9I	AATT	7 cut(s)	408, 436, 451, 515, 760, 813, 987
SsiI	CCGC	3 cut(s)	232, 296, 569
SspI	AATATT	1 cut(s)	891
SspMI	CTAG	2 cut(s)	122, 467
SstI	GAGCTC	2 cut(s)	55, 177
StyD4I	CCNGG	3 cut(s)	182, 341, 636
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	2 cut(s)	381, 712
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	203, 1008
TasI	AATT	7 cut(s)	408, 436, 451, 515, 760, 813, 987
TatI	WGTACW	1 cut(s)	476
TfiI	GAWTC	3 cut(s)	139, 1052, 1086
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	2 cut(s)	715, 1039
TseFI	GTSAC	4 cut(s)	99, 219, 287, 542
TseI	GCWGC	1 cut(s)	1079
Tsp45I	GTSAC	4 cut(s)	99, 219, 287, 542
TspDTI	ATGAA	6 cut(s)	76, 205, 266, 464, 570, 864
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	715, 1039
Van91I	CCANNNNNTGG	1 cut(s)	763
VpaK11BI	GGWCC	1 cut(s)	362
XceI	RCATGY	4 cut(s)	65, 79, 731, 787
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XspI	CTAG	2 cut(s)	122, 467
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.