Rh5BG070000
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
5712651 .. 5712956
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG070000.1

Sequence Viewer

Length: 306 bp
ATGCAGTTAACTTTACATGATTTGAGCGACGAGGAATGCTTGAAGGTTCTGAGGAAATGTAGGGAAGCTATTCCAGACAGTGGTCAAGGAAAGGTTATTATCATAGAAATTGTGATAAACGAGGAGAAAGACGAGCACGAATCAAATGAAGCAAAGCTCTTCTTTGACATGTTGATGATGGTTGTGGTGACCGGAAGAGAGAGAAGTGAGAAAGAGTGGGAAAAGCTTTTTCTGGAGGCTGGTTTCAGCAAGTACAAGATAACTCCCATCTTTGGTTTAAGGTCCCTTATTGAAGTTTATCCTTAG

Protein Analysis

101

Amino Acids

11.78

Weight (kDa)

4.95

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 2 - 83 1.7e-19 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 80
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 80, 272
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 2 cut(s) 43, 293
AluBI AGCT 3 cut(s) 68, 157, 226
AluI AGCT 3 cut(s) 68, 157, 226
Alw21I GWGCWC 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 138
BccI CCATC 2 cut(s) 172, 275
Bme18I GGWCC 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 284
BoxI GACNNNNGTC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 254
BsaWI WCCGGW 1 cut(s) 191
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 272
BseLI CCNNNNNNNGG 2 cut(s) 80, 272
BseMII CTCAG 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 2 cut(s) 80, 272
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 284
BspQI GCTCTTC 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 2 cut(s) 164, 190
BstDEI CTNAG 2 cut(s) 50, 303
BstEII GGTNACC 1 cut(s) 187
BstNSI RCATGY 1 cut(s) 172
BstPAI GACNNNNGTC 1 cut(s) 81
BstPI GGTNACC 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 282
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 17, 169
CviJI RGCY 4 cut(s) 68, 157, 226, 239
CviKI_1 RGCY 4 cut(s) 68, 157, 226, 239
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 2 cut(s) 50, 303
Eam1104I CTCTTC 2 cut(s) 164, 190
EarI CTCTTC 2 cut(s) 164, 190
Eco47I GGWCC 1 cut(s) 282
Eco91I GGTNACC 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 282
EcoO65I GGTNACC 1 cut(s) 187
FaeI CATG 2 cut(s) 20, 172
FaiI YATR 3 cut(s) 18, 104, 170
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 1 cut(s) 268
FatI CATG 2 cut(s) 16, 168
GsuI CTGGAG 1 cut(s) 254
HapII CCGG 1 cut(s) 192
Hin1II CATG 2 cut(s) 20, 172
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 1 cut(s) 140
HpaI GTTAAC 1 cut(s) 9
HpaII CCGG 1 cut(s) 192
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 74, 233
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 50, 303
Hsp92II CATG 2 cut(s) 20, 172
KspAI GTTAAC 1 cut(s) 9
LguI GCTCTTC 1 cut(s) 164
LpnPI CCDG 4 cut(s) 87, 205, 218, 225
MaeIII GTNAC 1 cut(s) 187
MboII GAAGA 2 cut(s) 151, 207
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 1 cut(s) 108
MnlI CCTC 4 cut(s) 25, 45, 115, 229
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 2 cut(s) 8, 278
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 1 cut(s) 192
Mva1269I GAATGC 1 cut(s) 41
NlaIII CATG 2 cut(s) 20, 172
NlaIV GGNNCC 1 cut(s) 284
NmuCI GTSAC 1 cut(s) 187
NspI RCATGY 1 cut(s) 172
PciI ACATGT 1 cut(s) 168
PciSI GCTCTTC 1 cut(s) 164
PctI GAATGC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 140
PflMI CCANNNNNTGG 1 cut(s) 80
PpuMI RGGWCCY 1 cut(s) 282
PscI ACATGT 1 cut(s) 168
PshAI GACNNNNGTC 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 282
PspEI GGTNACC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 284
PspPI GGNCC 1 cut(s) 282
PspPPI RGGWCCY 1 cut(s) 282
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 8, 278
Sau96I GGNCC 1 cut(s) 282
SduI GDGCHC 1 cut(s) 138
SetI ASST 6 cut(s) 48, 70, 96, 159, 228, 284
SinI GGWCC 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 173
Sse9I AATT 1 cut(s) 108
TaaI ACNGT 1 cut(s) 80
TasI AATT 1 cut(s) 108
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 2 cut(s) 8, 278
Tru9I TTAA 2 cut(s) 8, 278
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 162
TspRI CASTG 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 282
XceI RCATGY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.