Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000692

Physical Location & Seq

Genomic Coordinates Forward (+)

10513316 .. 10514438

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G119800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAACAATCATGGAAATCATGATCATCCAGCTTCCCCATTTGAGATGGCACATGGAAGGCCTTTTTGGGGTTTGGCTGCTCAGCAACCAAAGTTTGGTAGCTTGTTTAATGAAGCAATGGAGGCTGACTCTCAGCTGATAGCAAGGGCAGTGGTTGAAGAGTGTGAAGGAGTTTTTGAGGGTTTGAATTCCTTGGTTGATGTTGGAGGTGGCACAGGAAACATGGCCAAGGCCATTGCGAAGGCCTTCCCGAACATTAATTGCACTGTCCTTGACCAACCACATGTTGTCGCAAACTTGCAAGGGACTCACAATTTGGATTTTGTTGGAGGAGACATGTTCGACAAGATACCCCCAGCAAATGCAATTTTCCTCAAGTGGATTCTGCATGATTGGAGTGATGAGGAAAGCGTGAAGATATTGAAGAAGAGTAAAGAAGCAATTCTGAGCAAAAATGAAGGAGGAAAGGTTATCATCCTGGAAATAAATGTGTCTCCAGATAATAAGAAGATGGATAAGAAATCAATTGAAACTCAGCTCATGTGGGATATGTTGATGATGGTTAACCTTAATGGCAAAGAGCGTAGTGAAGCAGAGTGGGAAAAGCTCTTTTTGACTGTTGGATTCTCTCTCTATAAGATTACACATACATTGGGCCTCAGGTCTCTTATTGAAGTTTACCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0033799 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

229

Amino Acids

25.35

Weight (kDa)

5.48

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26800 FvH4_6g26810
malus_domestica	MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica	Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis	pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis	RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata	RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora	Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa	Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha	Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana	Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	187
AfiI	CCNNNNNNNGG	2 cut(s)	68, 95
AflIII	ACRYGT	2 cut(s)	283, 336
AgsI	TTSAA	5 cut(s)	158, 187, 424, 530, 674
AjnI	CCWGG	1 cut(s)	477
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AluBI	AGCT	5 cut(s)	32, 102, 136, 538, 607
AluI	AGCT	5 cut(s)	32, 102, 136, 538, 607
Alw26I	GTCTC	3 cut(s)	327, 498, 669
AoxI	GGCC	5 cut(s)	59, 225, 231, 243, 655
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	187
ArsI	GACNNNNNNTTYG	2 cut(s)	298, 330
AseI	ATTAAT	1 cut(s)	258
Asp700I	GAANNNNTTC	2 cut(s)	245, 441
AspS9I	GGNCC	1 cut(s)	655
AxyI	CCTNAGG	1 cut(s)	659
BalI	TGGCCA	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	3 cut(s)	40, 505, 553
BciT130I	CCWGG	1 cut(s)	479
BclI	TGATCA	1 cut(s)	22
BcoDI	GTCTC	3 cut(s)	327, 498, 669
BisI	GCNGC	1 cut(s)	78
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	655
BmrFI	CCNGG	1 cut(s)	479
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpmI	CTGGAG	1 cut(s)	480
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	359
BsaI	GGTCTC	1 cut(s)	669
BsaJI	CCNNGG	2 cut(s)	192, 228
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 95
Bse21I	CCTNAGG	1 cut(s)	659
Bse3DI	GCAATG	2 cut(s)	123, 234
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	192, 228
BseGI	GGATG	2 cut(s)	25, 474
BseLI	CCNNNNNNNGG	2 cut(s)	68, 95
BseMI	GCAATG	2 cut(s)	123, 234
BseMII	CTCAG	5 cut(s)	95, 146, 437, 548, 673
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	64
BseYI	CCCAGC	1 cut(s)	355
BshFI	GGCC	5 cut(s)	61, 227, 233, 245, 657
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	68, 95
BsmAI	GTCTC	3 cut(s)	327, 498, 669
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	5 cut(s)	61, 227, 233, 245, 657
Bso31I	GGTCTC	1 cut(s)	669
Bsp143I	GATC	1 cut(s)	22
Bsp1720I	GCTNAGC	1 cut(s)	81
BspANI	GGCC	5 cut(s)	61, 227, 233, 245, 657
BspCNI	CTCAG	5 cut(s)	94, 145, 438, 547, 672
BspHI	TCATGA	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	669
BsrDI	GCAATG	2 cut(s)	123, 234
BssECI	CCNNGG	2 cut(s)	192, 228
BssMI	GATC	1 cut(s)	22
BssT1I	CCWWGG	2 cut(s)	192, 228
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	2 cut(s)	268, 619
Bst6I	CTCTTC	2 cut(s)	153, 422
BstDEI	CTNAG	5 cut(s)	81, 132, 446, 534, 659
BstF5I	GGATG	2 cut(s)	25, 474
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	3 cut(s)	327, 498, 669
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	2 cut(s)	287, 340
BstSCI	CCNGG	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	64
Bsu36I	CCTNAGG	1 cut(s)	659
BsuRI	GGCC	5 cut(s)	61, 227, 233, 245, 657
BtsCI	GGATG	2 cut(s)	25, 474
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	156, 264
CciI	TCATGA	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	655
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviAII	CATG	8 cut(s)	11, 20, 53, 223, 284, 337, 389, 541
DdeI	CTNAG	5 cut(s)	81, 132, 446, 534, 659
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	153, 422
EarI	CTCTTC	2 cut(s)	153, 422
Eco130I	CCWWGG	2 cut(s)	192, 228
Eco147I	AGGCCT	2 cut(s)	61, 245
Eco31I	GGTCTC	1 cut(s)	669
Eco81I	CCTNAGG	1 cut(s)	659
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	477
EcoT14I	CCWWGG	2 cut(s)	192, 228
ErhI	CCWWGG	2 cut(s)	192, 228
FaeI	CATG	8 cut(s)	14, 23, 56, 226, 287, 340, 392, 544
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	8 cut(s)	10, 19, 52, 222, 283, 336, 388, 540
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	2 cut(s)	12, 461
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
GsaI	CCCAGC	1 cut(s)	359
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	5 cut(s)	61, 227, 233, 245, 657
Hin1II	CATG	8 cut(s)	14, 23, 56, 226, 287, 340, 392, 544
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	4 cut(s)	128, 307, 382, 624
HpaI	GTTAAC	1 cut(s)	565
Hpy166II	GTNNAC	2 cut(s)	565, 679
Hpy188I	TCNGA	1 cut(s)	447
Hpy188III	TCNNGA	3 cut(s)	20, 250, 497
Hpy8I	GTNNAC	2 cut(s)	565, 679
HpyAV	CCTTC	5 cut(s)	51, 161, 235, 256, 452
HpyCH4III	ACNGT	2 cut(s)	268, 619
HpyCH4V	TGCA	4 cut(s)	264, 301, 365, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	5 cut(s)	81, 132, 446, 534, 659
Hsp92II	CATG	8 cut(s)	14, 23, 56, 226, 287, 340, 392, 544
Ksp22I	TGATCA	1 cut(s)	22
KspAI	GTTAAC	1 cut(s)	565
Kzo9I	GATC	1 cut(s)	22
LpnPI	CCDG	7 cut(s)	42, 201, 369, 464, 491, 510, 646
Lsp1109I	GCAGC	1 cut(s)	64
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	5 cut(s)	170, 427, 436, 439, 520
MfeI	CAATTG	1 cut(s)	525
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	6 cut(s)	187, 259, 313, 366, 441, 525
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	2 cut(s)	122, 301
MmeI	TCCRAC	3 cut(s)	184, 307, 601
MnlI	CCTC	8 cut(s)	115, 172, 200, 323, 383, 397, 455, 668
Mox20I	TGGCCA	1 cut(s)	227
MroXI	GAANNNNTTC	2 cut(s)	245, 441
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	4 cut(s)	108, 258, 564, 570
Msp20I	TGGCCA	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	479
MunI	CAATTG	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	8 cut(s)	14, 23, 56, 226, 287, 340, 392, 544
NspI	RCATGY	2 cut(s)	287, 340
PagI	TCATGA	1 cut(s)	19
PceI	AGGCCT	2 cut(s)	61, 245
PciI	ACATGT	2 cut(s)	283, 336
PdmI	GAANNNNTTC	2 cut(s)	245, 441
PfeI	GAWTC	2 cut(s)	382, 624
PflMI	CCANNNNNTGG	1 cut(s)	95
PfoI	TCCNGGA	1 cut(s)	477
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	2 cut(s)	122, 301
PpsI	GAGTC	2 cut(s)	122, 301
PscI	ACATGT	2 cut(s)	283, 336
PshBI	ATTAAT	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	477
PspFI	CCCAGC	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	655
PvuII	CAGCTG	1 cut(s)	136
SaqAI	TTAA	4 cut(s)	108, 258, 564, 570
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	655
SchI	GAGTC	2 cut(s)	122, 301
ScrFI	CCNGG	1 cut(s)	479
SetI	ASST	9 cut(s)	34, 104, 138, 211, 471, 540, 570, 609, 665
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	6 cut(s)	187, 259, 313, 366, 441, 525
SseBI	AGGCCT	2 cut(s)	61, 245
StuI	AGGCCT	2 cut(s)	61, 245
StyD4I	CCNGG	1 cut(s)	477
StyI	CCWWGG	2 cut(s)	192, 228
TaaI	ACNGT	2 cut(s)	268, 619
TaqI	TCGA	1 cut(s)	342
TasI	AATT	6 cut(s)	187, 259, 313, 366, 441, 525
TfiI	GAWTC	2 cut(s)	382, 624
Tru1I	TTAA	4 cut(s)	108, 258, 564, 570
Tru9I	TTAA	4 cut(s)	108, 258, 564, 570
TscAI	CASTG	2 cut(s)	156, 271
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	3 cut(s)	17, 126, 471
TspRI	CASTG	2 cut(s)	156, 271
Van91I	CCANNNNNTGG	1 cut(s)	95
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	2 cut(s)	287, 340
XmnI	GAANNNNTTC	2 cut(s)	245, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.