RchiOBHm_Chr2g0123091
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000692
Physical Location & Seq
Forward (+)
36220260 .. 36221031
772 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49541

Sequence Viewer

Length: 459 bp
ATGGCCATGGCCATTGTTGATGCATTCCCAGAAATTGACTGCACCGTACTTGATCTCCCACATGTGGTGGCTGATCTGCAAGGAAGTAAGAACCTGAAATATGCTGGAGGGGACATGTTTGAAGCAGTTCCTCCGGCAGATGCAATTATTTTGAAGTGGATATTGCATGACTGGAGTGATGAAGAATCTGTGAAAATACTTGAGCGATGTAAAGAGGCAATAACAAGTAATAAGAAGAAAGGCAAGGTGATTATCATAGATATGAATGTGGAAAACCAGAAAGGAGATGACGAATCAATTGAGACACAACTGTTCTTCGACATGTTGATGATGATGATGGCCACCGGAAAAGAAAGGAATGAAAAAGAATGGGCTCAGCTCTTTTCTGATGCAGGTTTCAGTGACTATAAGATAACTCCCATTTTGGGTCTAAGATCACTCATTGAGGTTTATCCTTGA

Protein Analysis

152

Amino Acids

17.16

Weight (kDa)

4.56

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 2 - 134 5.7e-39 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 383
AcoI YGGCCR 3 cut(s) 3, 9, 339
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 2 cut(s) 64, 425
AflIII ACRYGT 3 cut(s) 61, 114, 321
AgsI TTSAA 2 cut(s) 122, 154
AluBI AGCT 1 cut(s) 379
AluI AGCT 1 cut(s) 379
Alw26I GTCTC 1 cut(s) 296
AoxI GGCC 3 cut(s) 3, 9, 339
Asp700I GAANNNNTTC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 259
BalI TGGCCA 3 cut(s) 5, 11, 341
BanII GRGCYC 1 cut(s) 376
BccI CCATC 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 383
BlpI GCTNAGC 1 cut(s) 375
BmsI GCATC 3 cut(s) 10, 130, 379
BpmI CTGGAG 2 cut(s) 126, 193
Bpu1102I GCTNAGC 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 6
BsaWI WCCGGW 1 cut(s) 344
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 425
Bse1I ACTGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 6
BseLI CCNNNNNNNGG 2 cut(s) 64, 425
BseMII CTCAG 1 cut(s) 389
BseNI ACTGG 1 cut(s) 176
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 3 cut(s) 5, 11, 341
BsiSI CCGG 2 cut(s) 134, 345
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 64, 425
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 3 cut(s) 5, 11, 341
Bsp1286I GDGCHC 1 cut(s) 376
Bsp143I GATC 3 cut(s) 52, 73, 434
Bsp1720I GCTNAGC 1 cut(s) 375
Bsp19I CCATGG 1 cut(s) 6
BspANI GGCC 3 cut(s) 5, 11, 341
BspCNI CTCAG 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 383
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 3 cut(s) 52, 73, 434
BssT1I CCWWGG 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 46, 312
BstDEI CTNAG 2 cut(s) 375, 431
BstDSI CCRYGG 1 cut(s) 6
BstKTI GATC 3 cut(s) 55, 76, 437
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 3 cut(s) 52, 73, 434
BstNSI RCATGY 3 cut(s) 65, 118, 325
BsuRI GGCC 3 cut(s) 5, 11, 341
BtgI CCRYGG 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 406
BveI ACCTGC 1 cut(s) 383
Csp6I GTAC 1 cut(s) 47
CviAII CATG 5 cut(s) 7, 62, 115, 167, 322
CviJI RGCY 6 cut(s) 5, 11, 71, 341, 374, 379
CviKI_1 RGCY 6 cut(s) 5, 11, 71, 341, 374, 379
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 2 cut(s) 375, 431
DpnI GATC 3 cut(s) 54, 75, 436
DpnII GATC 3 cut(s) 52, 73, 434
EaeI YGGCCR 3 cut(s) 3, 9, 339
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 6
EcoT22I ATGCAT 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 5 cut(s) 10, 65, 118, 170, 325
FaiI YATR 9 cut(s) 8, 63, 102, 116, 168, 257, 263, 323, 408
FaqI GGGAC 1 cut(s) 125
FatI CATG 5 cut(s) 6, 61, 114, 166, 321
FriOI GRGCYC 1 cut(s) 376
GsuI CTGGAG 2 cut(s) 126, 193
HaeIII GGCC 3 cut(s) 5, 11, 341
HapII CCGG 2 cut(s) 134, 345
Hin1II CATG 5 cut(s) 10, 65, 118, 170, 325
HinfI GANTC 2 cut(s) 185, 293
HpaII CCGG 2 cut(s) 134, 345
HphI GGTGA 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 388
HpyCH4III ACNGT 2 cut(s) 46, 312
HpyCH4V TGCA 6 cut(s) 23, 42, 79, 143, 166, 392
HpyF3I CTNAG 2 cut(s) 375, 431
Hsp92II CATG 5 cut(s) 10, 65, 118, 170, 325
Kzo9I GATC 3 cut(s) 52, 73, 434
LpnPI CCDG 8 cut(s) 42, 90, 107, 147, 157, 290, 358, 378
LweI GCATC 3 cut(s) 10, 130, 379
MaeIII GTNAC 1 cut(s) 401
MalI GATC 3 cut(s) 54, 75, 436
MboI GATC 3 cut(s) 52, 73, 434
MboII GAAGA 3 cut(s) 194, 247, 307
MfeI CAATTG 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 376
MlsI TGGCCA 3 cut(s) 5, 11, 341
MluCI AATT 3 cut(s) 33, 144, 297
MluNI TGGCCA 3 cut(s) 5, 11, 341
MnlI CCTC 4 cut(s) 101, 141, 208, 439
Mox20I TGGCCA 3 cut(s) 5, 11, 341
Mph1103I ATGCAT 1 cut(s) 25
MroXI GAANNNNTTC 1 cut(s) 126
MscI TGGCCA 3 cut(s) 5, 11, 341
MslI CAYNNNNRTG 2 cut(s) 260, 326
Msp20I TGGCCA 3 cut(s) 5, 11, 341
MspI CCGG 2 cut(s) 134, 345
MunI CAATTG 1 cut(s) 297
Mva1269I GAATGC 1 cut(s) 23
NcoI CCATGG 1 cut(s) 6
NdeII GATC 3 cut(s) 52, 73, 434
NlaIII CATG 5 cut(s) 10, 65, 118, 170, 325
NmuCI GTSAC 1 cut(s) 401
NsiI ATGCAT 1 cut(s) 25
NspI RCATGY 3 cut(s) 65, 118, 325
PciI ACATGT 3 cut(s) 61, 114, 321
PctI GAATGC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 2 cut(s) 185, 293
PscI ACATGT 3 cut(s) 61, 114, 321
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
RseI CAYNNNNRTG 2 cut(s) 260, 326
Sau3AI GATC 3 cut(s) 52, 73, 434
SduI GDGCHC 1 cut(s) 376
SetI ASST 5 cut(s) 96, 249, 381, 397, 450
SfaNI GCATC 3 cut(s) 10, 130, 379
SmiMI CAYNNNNRTG 2 cut(s) 260, 326
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 3 cut(s) 33, 144, 297
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 46, 312
TaqI TCGA 1 cut(s) 318
TasI AATT 3 cut(s) 33, 144, 297
TfiI GAWTC 2 cut(s) 185, 293
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 3 cut(s) 195, 278, 375
TspRI CASTG 1 cut(s) 406
XceI RCATGY 3 cut(s) 65, 118, 325
XmnI GAANNNNTTC 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.