Rmu_sc0027975.1_g000001
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027975.1
Physical Location & Seq
Reverse (-)
1 .. 649
649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027975.1_g000001.1.cds

Sequence Viewer

Length: 306 bp
atgtttgataagcagtggatattgcatgactggagtgatgaagactctgtgaaaatacttgagcgatgtaaagaggcaataacaagtaataagaagaaaggcaaggtgattatcatagatatgaatgtggaaaaccagaaaggagatcacgaatcaattgagacacaactgttctttgacacgctgatgatgatgatgaccaccggaaaagaaaggaatgaaaaagaatgggctcagctcttttctgatgcaggtttcagtgactataagataactcccattttgggtctaagatctctcattgag

Protein Analysis

102

Amino Acids

11.96

Weight (kDa)

5.04

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 284
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw26I GTCTC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 118
BanII GRGCYC 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 242
BglII AGATCT 1 cut(s) 293
BlpI GCTNAGC 1 cut(s) 234
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 48
BpmI CTGGAG 1 cut(s) 52
Bpu1102I GCTNAGC 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 35
BsiSI CCGG 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 2 cut(s) 145, 293
Bsp1720I GCTNAGC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 35
BssMI GATC 2 cut(s) 145, 293
Bst4CI ACNGT 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 234, 290
BstKTI GATC 2 cut(s) 148, 296
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 145, 293
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BtgZI GCGATG 1 cut(s) 79
BtsI GCAGTG 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 20, 265
BveI ACCTGC 1 cut(s) 242
CviAII CATG 1 cut(s) 26
CviJI RGCY 2 cut(s) 233, 238
CviKI_1 RGCY 2 cut(s) 233, 238
DdeI CTNAG 2 cut(s) 234, 290
DpnI GATC 2 cut(s) 147, 295
DpnII GATC 2 cut(s) 145, 293
Eco24I GRGCYC 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 235
FaeI CATG 1 cut(s) 29
FaiI YATR 4 cut(s) 27, 116, 122, 267
FatI CATG 1 cut(s) 25
FriOI GRGCYC 1 cut(s) 235
GsuI CTGGAG 1 cut(s) 52
HapII CCGG 1 cut(s) 204
Hin1II CATG 1 cut(s) 29
HinfI GANTC 2 cut(s) 44, 152
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 25, 251
HpyF3I CTNAG 2 cut(s) 234, 290
Hsp92II CATG 1 cut(s) 29
Kzo9I GATC 2 cut(s) 145, 293
LpnPI CCDG 4 cut(s) 16, 149, 217, 237
LweI GCATC 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 260
MalI GATC 2 cut(s) 147, 295
MboI GATC 2 cut(s) 145, 293
MboII GAAGA 2 cut(s) 53, 106
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 1 cut(s) 156
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 1 cut(s) 67
MslI CAYNNNNRTG 2 cut(s) 119, 185
MspI CCGG 1 cut(s) 204
MunI CAATTG 1 cut(s) 156
NdeII GATC 2 cut(s) 145, 293
NlaIII CATG 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 152
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 293
RseI CAYNNNNRTG 2 cut(s) 119, 185
Sau3AI GATC 2 cut(s) 145, 293
SchI GAGTC 1 cut(s) 38
SduI GDGCHC 1 cut(s) 235
SetI ASST 3 cut(s) 108, 240, 256
SfaNI GCATC 1 cut(s) 238
SmiMI CAYNNNNRTG 2 cut(s) 119, 185
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 1 cut(s) 156
TaaI ACNGT 1 cut(s) 171
TasI AATT 1 cut(s) 156
TfiI GAWTC 1 cut(s) 152
TscAI CASTG 2 cut(s) 20, 265
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 3 cut(s) 54, 137, 234
TspRI CASTG 2 cut(s) 20, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.