Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000692

Physical Location & Seq

Genomic Coordinates Reverse (-)

25801883 .. 25809265

Gene Structure 7383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1149300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGGTTTGAGTGATGGTGAAGTGGGTTCTACTAGCCATGAGCTTCTTGAAGCTCAAGCTCAGATTTGGAACCACATGTTCCAGTTCATAAACTCCATGGCACTCAAATGTGCAGCTCAACTGGGCATCCCAGACGTGATTCACAACCACGGCCAACCCATCTCTCTTTCCGAGCTCATCGCTGCGCTCAATGTCCACCCTTCAAGAGCTCATTTCGTCTCACGCCTGATGCGCATCCTCGTCCACTCCGATTTCTTTGCACAACATCATCATGTTCATCATGATTGTGACGATGTGGAGGAAGAAGAAGCTGTTGTATTGTATAGCCTAACACCAACTTCTAGGCTTCTTCTCAAAGACGGGCCATCAAACACCACACCACTTATACTCATGATACTCGATCCGGTACTGACAACCCCATTTCACTTGATGGGAGCTTGGTTGCAGATGAACGGTGGTGATGATCCAGCTACTATATGTACACCATTTGAAATGGAGAATGGAATGCCCTTTTGGGATTTGGCAGCTCAGGAACCAAGGTTCGGTAACTTGTTTGATGAAGCAATGGAGGCTGACTCCAAGCTTCTCGGAAGGGAGGTGGTGAAAGAGTGTGGAGGAGTTTTCGAGGGCTTGAAATCCCTGGTGGATGTTGGAGGAGGAACAGGAACCATGGCCAAGGCCATTGCCAATGCATTCCCCAGCATCAACTGCATTGTGTTTGACCAACCACATGTGGTGGCTGACTTGCAAGGAACCACCCATAATTTGGGTTTTGTGGGGGGAGACATGTTTGTGGAAATACCCCCAGCAAATGCAATTTTGCTCAAGTGGATTTTGCATGATTGGAGCGATGAAGAAAGCGTGAAGATATTGAAGAAGTGTAGAGAAGCAATACTTCTGAGCAAAAACGATGAAGGGAATAAGAAGATTATCATCATAGACATAGTTGTGGGACATGTCGATAACAAGGAGAAGATGGTGGATAAGAAATCAATTGAAACCCAACTGATGTTTGATGTGCTGATGATGTCTGCCTTCACTGGCAAAGAGCGTAGCGAATCAGAATGGAAAACGATCTTTTTGGCTGCTGGTTTCACTCACTATAATATGACTCATATGTTCGGTTTCAGGTCTCTTATTGAACTTTACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0033799 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

385

Amino Acids

42.66

Weight (kDa)

5.14

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	23 - 120	1.9e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	146 - 365	3.1e-48	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26800 FvH4_6g26810
malus_domestica	MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica	Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis	pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis	RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata	RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora	Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa	Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha	Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana	Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	233
AccB7I	CCANNNNNTGG	1 cut(s)	766
AclWI	GGATC	2 cut(s)	395, 458
AcoI	YGGCCR	2 cut(s)	151, 672
AfaI	GTAC	2 cut(s)	408, 481
AfiI	CCNNNNNNNGG	2 cut(s)	542, 766
AflIII	ACRYGT	4 cut(s)	75, 730, 786, 955
AgsI	TTSAA	7 cut(s)	50, 204, 491, 634, 874, 998, 1142
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	639
AjuI	GAANNNNNNNTTGG	2 cut(s)	496, 528
AloI	GAACNNNNNNTCC	2 cut(s)	524, 556
Alw21I	GWGCWC	2 cut(s)	177, 211
Alw26I	GTCTC	3 cut(s)	223, 777, 1137
AlwI	GGATC	2 cut(s)	395, 458
AoxI	GGCC	4 cut(s)	151, 362, 672, 678
ApeKI	GCWGC	4 cut(s)	113, 182, 524, 1085
AspLEI	GCGC	2 cut(s)	187, 234
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	3 cut(s)	29, 470, 613
BalI	TGGCCA	1 cut(s)	674
BanII	GRGCYC	2 cut(s)	177, 211
Bbv12I	GWGCWC	2 cut(s)	177, 211
BbvI	GCAGC	4 cut(s)	125, 169, 536, 1072
BccI	CCATC	5 cut(s)	8, 167, 373, 424, 970
BceAI	ACGGC	1 cut(s)	166
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	1 cut(s)	641
BcoDI	GTCTC	3 cut(s)	223, 777, 1137
BfaI	CTAG	2 cut(s)	33, 342
BisI	GCNGC	4 cut(s)	114, 183, 525, 1086
BlsI	GCNGC	4 cut(s)	115, 184, 526, 1087
Bme1390I	CCNGG	1 cut(s)	641
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	4 cut(s)	71, 534, 667, 754
BmrFI	CCNGG	1 cut(s)	641
BmrI	ACTGGG	1 cut(s)	131
BmsI	GCATC	4 cut(s)	135, 219, 243, 711
BmuI	ACTGGG	1 cut(s)	131
BplI	GAGNNNNNCTC	2 cut(s)	560, 592
Bpu10I	CCTNAGC	1 cut(s)	528
BpuEI	CTTGAG	2 cut(s)	39, 809
BsaBI	GATNNNNATC	2 cut(s)	233, 932
BsaI	GGTCTC	1 cut(s)	1137
BsaJI	CCNNGG	6 cut(s)	96, 148, 536, 639, 669, 675
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 766
Bse1I	ACTGG	3 cut(s)	82, 126, 1045
Bse3DI	GCAATG	2 cut(s)	570, 681
Bse8I	GATNNNNATC	2 cut(s)	233, 932
BseBI	CCWGG	1 cut(s)	641
BseDI	CCNNGG	6 cut(s)	96, 148, 536, 639, 669, 675
BseGI	GGATG	3 cut(s)	126, 234, 652
BseJI	GATNNNNATC	2 cut(s)	233, 932
BseLI	CCNNNNNNNGG	2 cut(s)	542, 766
BseMI	GCAATG	2 cut(s)	570, 681
BseMII	CTCAG	3 cut(s)	74, 542, 890
BseNI	ACTGG	3 cut(s)	82, 126, 1045
BseRI	GAGGAG	2 cut(s)	630, 669
BseXI	GCAGC	4 cut(s)	125, 169, 536, 1072
BseYI	CCCAGC	2 cut(s)	698, 805
BsgI	GTGCAG	1 cut(s)	132
BshFI	GGCC	4 cut(s)	153, 364, 674, 680
BsiHKAI	GWGCWC	2 cut(s)	177, 211
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	966
BslI	CCNNNNNNNGG	2 cut(s)	542, 766
BsmAI	GTCTC	3 cut(s)	223, 777, 1137
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	966
BsmI	GAATGC	2 cut(s)	510, 692
BsnI	GGCC	4 cut(s)	153, 364, 674, 680
Bso31I	GGTCTC	1 cut(s)	1137
Bsp1286I	GDGCHC	2 cut(s)	177, 211
Bsp1407I	TGTACA	1 cut(s)	479
Bsp143I	GATC	3 cut(s)	400, 463, 1074
Bsp19I	CCATGG	2 cut(s)	96, 669
BspANI	GGCC	4 cut(s)	153, 364, 674, 680
BspCNI	CTCAG	3 cut(s)	73, 541, 891
BspHI	TCATGA	2 cut(s)	280, 390
BspLI	GGNNCC	4 cut(s)	71, 534, 667, 754
BspPI	GGATC	2 cut(s)	395, 458
BspTNI	GGTCTC	1 cut(s)	1137
BsrDI	GCAATG	2 cut(s)	570, 681
BsrGI	TGTACA	1 cut(s)	479
BsrI	ACTGG	3 cut(s)	82, 126, 1045
BssECI	CCNNGG	6 cut(s)	96, 148, 536, 639, 669, 675
BssMI	GATC	3 cut(s)	400, 463, 1074
BssT1I	CCWWGG	4 cut(s)	96, 536, 669, 675
Bst2UI	CCWGG	1 cut(s)	641
Bst4CI	ACNGT	1 cut(s)	455
BstAPI	GCANNNNNTGC	1 cut(s)	708
BstAUI	TGTACA	1 cut(s)	479
BstDEI	CTNAG	3 cut(s)	60, 528, 899
BstDSI	CCRYGG	3 cut(s)	96, 148, 669
BstF5I	GGATG	3 cut(s)	126, 234, 652
BstHHI	GCGC	2 cut(s)	187, 234
BstKTI	GATC	3 cut(s)	403, 466, 1077
BstMAI	GTCTC	3 cut(s)	223, 777, 1137
BstMBI	GATC	3 cut(s)	400, 463, 1074
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 569, 708
BstNI	CCWGG	1 cut(s)	641
BstNSI	RCATGY	4 cut(s)	79, 734, 790, 959
BstSCI	CCNGG	1 cut(s)	639
BstV1I	GCAGC	4 cut(s)	125, 169, 536, 1072
BsuRI	GGCC	4 cut(s)	153, 364, 674, 680
BtgI	CCRYGG	3 cut(s)	96, 148, 669
BtgZI	GCGATG	2 cut(s)	163, 864
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	3 cut(s)	126, 234, 652
BtsIMutI	CAGTG	1 cut(s)	1038
CciI	TCATGA	2 cut(s)	280, 390
CfoI	GCGC	2 cut(s)	187, 234
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	407, 480
CviQI	GTAC	2 cut(s)	407, 480
DdeI	CTNAG	3 cut(s)	60, 528, 899
DpnI	GATC	3 cut(s)	402, 465, 1076
DpnII	GATC	3 cut(s)	400, 463, 1074
EaeI	YGGCCR	2 cut(s)	151, 672
Ecl136II	GAGCTC	2 cut(s)	175, 209
Eco130I	CCWWGG	4 cut(s)	96, 536, 669, 675
Eco24I	GRGCYC	2 cut(s)	177, 211
Eco31I	GGTCTC	1 cut(s)	1137
Eco53kI	GAGCTC	2 cut(s)	175, 209
EcoICRI	GAGCTC	2 cut(s)	175, 209
EcoRII	CCWGG	1 cut(s)	639
EcoT14I	CCWWGG	4 cut(s)	96, 536, 669, 675
EcoT22I	ATGCAT	1 cut(s)	694
EcoT38I	GRGCYC	2 cut(s)	177, 211
ErhI	CCWWGG	4 cut(s)	96, 536, 669, 675
Esp3I	CGTCTC	1 cut(s)	223
FalI	AAGNNNNNCTT	2 cut(s)	879, 911
FaqI	GGGAC	1 cut(s)	966
FauNDI	CATATG	1 cut(s)	1116
Fnu4HI	GCNGC	4 cut(s)	114, 183, 525, 1086
FokI	GGATG	3 cut(s)	113, 221, 659
FriOI	GRGCYC	2 cut(s)	177, 211
Fsp4HI	GCNGC	4 cut(s)	114, 183, 525, 1086
FspAI	RTGCGCAY	1 cut(s)	233
FspBI	CTAG	2 cut(s)	33, 342
FspI	TGCGCA	1 cut(s)	233
GlaI	GCGC	2 cut(s)	186, 233
GluI	GCNGC	4 cut(s)	114, 183, 525, 1086
GsaI	CCCAGC	2 cut(s)	702, 809
HaeIII	GGCC	4 cut(s)	153, 364, 674, 680
HapII	CCGG	1 cut(s)	404
HhaI	GCGC	2 cut(s)	187, 234
Hin6I	GCGC	2 cut(s)	185, 232
HinP1I	GCGC	2 cut(s)	185, 232
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	4 cut(s)	139, 575, 1058, 1111
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	3 cut(s)	29, 470, 613
Hpy166II	GTNNAC	3 cut(s)	196, 244, 482
Hpy188I	TCNGA	6 cut(s)	63, 172, 250, 590, 900, 1063
Hpy188III	TCNNGA	5 cut(s)	47, 204, 281, 391, 530
Hpy8I	GTNNAC	3 cut(s)	196, 244, 482
HpyAV	CCTTC	4 cut(s)	210, 585, 908, 1045
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	8 cut(s)	113, 260, 445, 692, 711, 748, 815, 838
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 569, 708
HpyF3I	CTNAG	3 cut(s)	60, 528, 899
HpySE526I	ACGT	1 cut(s)	135
HspAI	GCGC	2 cut(s)	185, 232
Kzo9I	GATC	3 cut(s)	400, 463, 1074
LmnI	GCTCC	2 cut(s)	434, 846
Lsp1109I	GCAGC	4 cut(s)	125, 169, 536, 1072
LweI	GCATC	4 cut(s)	135, 219, 243, 711
MaeI	CTAG	2 cut(s)	33, 342
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	287, 545
MalI	GATC	3 cut(s)	402, 465, 1076
MboI	GATC	3 cut(s)	400, 463, 1074
MboII	GAAGA	8 cut(s)	314, 317, 341, 866, 877, 886, 937, 985
MfeI	CAATTG	1 cut(s)	993
MhlI	GDGCHC	2 cut(s)	177, 211
MlsI	TGGCCA	1 cut(s)	674
MluCI	AATT	3 cut(s)	763, 816, 993
MluNI	TGGCCA	1 cut(s)	674
MlyI	GAGTC	2 cut(s)	569, 1105
MmeI	TCCRAC	1 cut(s)	631
MnlI	CCTC	8 cut(s)	248, 292, 562, 589, 608, 619, 647, 650
Mox20I	TGGCCA	1 cut(s)	674
Mph1103I	ATGCAT	1 cut(s)	694
MscI	TGGCCA	1 cut(s)	674
MslI	CAYNNNNRTG	5 cut(s)	106, 270, 285, 791, 947
Msp20I	TGGCCA	1 cut(s)	674
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	641
MunI	CAATTG	1 cut(s)	993
Mva1269I	GAATGC	2 cut(s)	510, 692
MvaI	CCWGG	1 cut(s)	641
MwoI	GCNNNNNNNGC	3 cut(s)	231, 569, 708
NcoI	CCATGG	2 cut(s)	96, 669
NdeI	CATATG	1 cut(s)	1116
NdeII	GATC	3 cut(s)	400, 463, 1074
NlaIV	GGNNCC	4 cut(s)	71, 534, 667, 754
NmuCI	GTSAC	1 cut(s)	287
NsbI	TGCGCA	1 cut(s)	233
NsiI	ATGCAT	1 cut(s)	694
NspI	RCATGY	4 cut(s)	79, 734, 790, 959
PagI	TCATGA	2 cut(s)	280, 390
PciI	ACATGT	4 cut(s)	75, 730, 786, 955
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	2 cut(s)	510, 692
PfeI	GAWTC	2 cut(s)	139, 1058
PflMI	CCANNNNNTGG	1 cut(s)	766
PkrI	GCNGC	4 cut(s)	115, 184, 526, 1087
PleI	GAGTC	2 cut(s)	569, 1105
PpsI	GAGTC	2 cut(s)	569, 1105
PscI	ACATGT	4 cut(s)	75, 730, 786, 955
Psp124BI	GAGCTC	2 cut(s)	177, 211
Psp6I	CCWGG	1 cut(s)	639
PspFI	CCCAGC	2 cut(s)	698, 805
PspGI	CCWGG	1 cut(s)	639
PspN4I	GGNNCC	4 cut(s)	71, 534, 667, 754
PspPI	GGNCC	1 cut(s)	362
RsaI	GTAC	2 cut(s)	408, 481
RsaNI	GTAC	2 cut(s)	407, 480
RseI	CAYNNNNRTG	5 cut(s)	106, 270, 285, 791, 947
SacI	GAGCTC	2 cut(s)	177, 211
SatI	GCNGC	4 cut(s)	114, 183, 525, 1086
Sau3AI	GATC	3 cut(s)	400, 463, 1074
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	2 cut(s)	569, 1105
ScrFI	CCNGG	1 cut(s)	641
SduI	GDGCHC	2 cut(s)	177, 211
SfaNI	GCATC	4 cut(s)	135, 219, 243, 711
SmiMI	CAYNNNNRTG	5 cut(s)	106, 270, 285, 791, 947
SmlI	CTYRAG	2 cut(s)	54, 824
SmoI	CTYRAG	2 cut(s)	54, 824
Sse9I	AATT	3 cut(s)	763, 816, 993
SspMI	CTAG	2 cut(s)	33, 342
SstI	GAGCTC	2 cut(s)	177, 211
StyD4I	CCNGG	1 cut(s)	639
StyI	CCWWGG	4 cut(s)	96, 536, 669, 675
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	399, 624, 960
TasI	AATT	3 cut(s)	763, 816, 993
TatI	WGTACW	1 cut(s)	479
TfiI	GAWTC	2 cut(s)	139, 1058
TscAI	CASTG	1 cut(s)	1045
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	4 cut(s)	113, 182, 524, 1085
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	6 cut(s)	76, 266, 464, 573, 867, 927
TspRI	CASTG	1 cut(s)	1045
Van91I	CCANNNNNTGG	1 cut(s)	766
XceI	RCATGY	4 cut(s)	79, 734, 790, 959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	763
XspI	CTAG	2 cut(s)	33, 342
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.