Rh2BG339300
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
45207274 .. 45266255
58982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG339300.1

Sequence Viewer

Length: 1119 bp
ATGGAAAGACTGAACCATAAGTGGGCTGGTGAAGAGCATTCTACCCAGCTTCTTCAAGCTCAAGCCCACATATGGAACCACATTTTCAGCTTCATAAACTCCATGACCCTCAAATCTGCAATTGAACTAGGTATACCAGATATCATCAAAAAACATGGCCGCCCCATAACTCTGTCTGAGCTCACATCTGCATTACCAATTCACCCAACAAAAATCCCCAGTGTTTACCGCCTCATGCGTATATTGGTCCACTCCGGCATCTTTGCAAAAAAAAAGTTGACTAAACTGGATGAGGAAGAAGGTTATATACTTACTGACGCTTCTCAGCTCCTCCTTAAGGATCACCCCTTCAGTATAACTCCATTTGTAATGGCTATGCTCAACCCTATCGTCACAAAACCATGGCATTATATGAACACTTGGTTCCAAAATAATGACCCTGCGGCATTTAACACGGCATATGGGATGACATTTTGGGACTACAGCACCCAGGAGCCAAGTCTTGCCAACTTTTTCAATGATGCCATGGCTAGTGATACTCGTTTGGTGACCAGCGTGTTACTTAAAGAGTGCAAGGGGGTATTCGAGGGATTAAAATCATTAGTTGATGTTGGGGGTGGAACAGGAACAATGGCCAAGGCCATTGTTGATGCATTCCCAGAAATTGACTGCACCGTACTTGATCTCCCACATGTGGTGGCTGATCTGCAAGGAAGTAAGAACCTGAAATATGCTGGAGGGGACATGTTTGAGGCAGTTCCTCCGGCAGATGCAATTATTTTGAAGTGGATATTGCATGACTGGAGTGATGAAGACTCTGTGAAAATACTTGAGCGATGTAAAGAGGCAATAACAAGTAATAAGAAGAAAGGCAAGGTGATTATCATAGATATGAATGTGGAAAACCAGAAAGGAGATCACGAATCAATTGAGACACAACTGTTCTTTGACACGCTGATGATGATGATGACCACCGGAAAAGAAAGGAATGAAAAAGAATGGGCTCAGCTCTTTTCTGATGCAGCATGCCATCCAACCTTGCACGGTAGCTTGATGCAGCACCAGACAACTGTTAACGGGCATGAAATGCACAGCACGCAAGCACTGCAAAGCCAGTAA

Protein Analysis

372

Amino Acids

41.85

Weight (kDa)

5.84

Isoelectric Point (pI)

32.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 25 - 114 1.8e-21 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 135 - 341 2.1e-57 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 133
AciI CCGC 3 cut(s) 160, 229, 443
AclWI GGATC 1 cut(s) 348
AcoI YGGCCR 2 cut(s) 157, 633
AcuI CTGAAG 1 cut(s) 334
AfaI GTAC 1 cut(s) 678
AfiI CCNNNNNNNGG 4 cut(s) 22, 72, 337, 694
AflII CTTAAG 1 cut(s) 335
AflIII ACRYGT 2 cut(s) 691, 744
AgsI TTSAA 4 cut(s) 56, 125, 517, 784
AjnI CCWGG 1 cut(s) 489
AluBI AGCT 7 cut(s) 49, 59, 90, 181, 328, 1009, 1050
AluI AGCT 7 cut(s) 49, 59, 90, 181, 328, 1009, 1050
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 926
AlwI GGATC 1 cut(s) 348
AoxI GGCC 3 cut(s) 157, 633, 639
ApeKI GCWGC 2 cut(s) 1022, 1057
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 5 cut(s) 41, 194, 335, 559, 889
AvaII GGWCC 1 cut(s) 247
BalI TGGCCA 1 cut(s) 635
BanII GRGCYC 2 cut(s) 183, 1006
BarI GAAGNNNNNNTAC 2 cut(s) 291, 323
BbsI GAAGAC 1 cut(s) 819
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 1034, 1069
BccI CCATC 1 cut(s) 1038
BceAI ACGGC 1 cut(s) 471
BciT130I CCWGG 1 cut(s) 491
BcoDI GTCTC 1 cut(s) 926
BfaI CTAG 2 cut(s) 128, 531
BfmI CTRYAG 1 cut(s) 481
BfrI CTTAAG 1 cut(s) 335
BisI GCNGC 4 cut(s) 160, 444, 1023, 1058
BlpI GCTNAGC 1 cut(s) 1005
BlsI GCNGC 4 cut(s) 161, 445, 1024, 1059
Bme1390I CCNGG 1 cut(s) 491
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 3 cut(s) 77, 425, 495
BmrFI CCNGG 1 cut(s) 491
BmrI ACTGGG 1 cut(s) 213
BmsI GCATC 6 cut(s) 267, 511, 640, 760, 1009, 1044
BmuI ACTGGG 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 819
BpmI CTGGAG 2 cut(s) 756, 823
Bpu1102I GCTNAGC 1 cut(s) 1005
BpuEI CTTGAG 2 cut(s) 45, 851
BsaBI GATNNNNATC 1 cut(s) 595
BsaJI CCNNGG 4 cut(s) 401, 489, 525, 636
BsaWI WCCGGW 1 cut(s) 974
BsaXI ACNNNNNCTCC 2 cut(s) 669, 699
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 72, 337, 694
Bse1I ACTGG 4 cut(s) 219, 291, 806, 1114
Bse8I GATNNNNATC 1 cut(s) 595
BseBI CCWGG 1 cut(s) 491
BseDI CCNNGG 4 cut(s) 401, 489, 525, 636
BseGI GGATG 3 cut(s) 295, 471, 1030
BseJI GATNNNNATC 1 cut(s) 595
BseLI CCNNNNNNNGG 4 cut(s) 22, 72, 337, 694
BseMII CTCAG 3 cut(s) 168, 338, 1019
BseNI ACTGG 4 cut(s) 219, 291, 806, 1114
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 2 cut(s) 1034, 1069
BseYI CCCAGC 1 cut(s) 45
BsgI GTGCAG 1 cut(s) 655
BshFI GGCC 3 cut(s) 159, 635, 641
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 3 cut(s) 255, 764, 975
BslFI GGGAC 2 cut(s) 491, 755
BslI CCNNNNNNNGG 4 cut(s) 22, 72, 337, 694
BsmAI GTCTC 1 cut(s) 926
BsmFI GGGAC 2 cut(s) 491, 755
BsmI GAATGC 2 cut(s) 37, 653
BsnI GGCC 3 cut(s) 159, 635, 641
Bsp1286I GDGCHC 2 cut(s) 183, 1006
Bsp143I GATC 4 cut(s) 340, 682, 703, 916
Bsp1720I GCTNAGC 1 cut(s) 1005
Bsp19I CCATGG 2 cut(s) 401, 525
BspACI CCGC 3 cut(s) 160, 229, 443
BspANI GGCC 3 cut(s) 159, 635, 641
BspCNI CTCAG 3 cut(s) 169, 337, 1018
BspLI GGNNCC 3 cut(s) 77, 425, 495
BspPI GGATC 1 cut(s) 348
BspQI GCTCTTC 1 cut(s) 27
BspTI CTTAAG 1 cut(s) 335
BsrI ACTGG 4 cut(s) 219, 291, 806, 1114
BssECI CCNNGG 4 cut(s) 401, 489, 525, 636
BssMI GATC 4 cut(s) 340, 682, 703, 916
BssNAI GTATAC 1 cut(s) 134
BssT1I CCWWGG 3 cut(s) 401, 525, 636
Bst1107I GTATAC 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 4 cut(s) 676, 942, 1046, 1072
Bst6I CTCTTC 1 cut(s) 27
BstAFI CTTAAG 1 cut(s) 335
BstAPI GCANNNNNTGC 2 cut(s) 1087, 1105
BstC8I GCNNGC 3 cut(s) 1027, 1097, 1101
BstDEI CTNAG 3 cut(s) 177, 324, 1005
BstDSI CCRYGG 2 cut(s) 401, 525
BstEII GGTNACC 1 cut(s) 547
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 3 cut(s) 295, 471, 1030
BstKTI GATC 4 cut(s) 343, 685, 706, 919
BstMAI GTCTC 1 cut(s) 926
BstMBI GATC 4 cut(s) 340, 682, 703, 916
BstMWI GCNNNNNNNGC 3 cut(s) 1087, 1096, 1105
BstNI CCWGG 1 cut(s) 491
BstNSI RCATGY 3 cut(s) 695, 748, 1029
BstPI GGTNACC 1 cut(s) 547
BstSCI CCNGG 1 cut(s) 489
BstSFI CTRYAG 1 cut(s) 481
BstV1I GCAGC 2 cut(s) 1034, 1069
BstV2I GAAGAC 1 cut(s) 819
BstZ17I GTATAC 1 cut(s) 134
BsuRI GGCC 3 cut(s) 159, 635, 641
BtgI CCRYGG 2 cut(s) 401, 525
BtgZI GCGATG 1 cut(s) 850
BtsCI GGATG 3 cut(s) 295, 471, 1030
BtsI GCAGTG 1 cut(s) 1103
BtsIMutI CAGTG 2 cut(s) 226, 1103
Cac8I GCNNGC 3 cut(s) 1027, 1097, 1101
Cfr13I GGNCC 1 cut(s) 247
CseI GACGC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 677
CviQI GTAC 1 cut(s) 677
DdeI CTNAG 3 cut(s) 177, 324, 1005
DpnI GATC 4 cut(s) 342, 684, 705, 918
DpnII GATC 4 cut(s) 340, 682, 703, 916
EaeI YGGCCR 2 cut(s) 157, 633
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 3 cut(s) 401, 525, 636
Eco24I GRGCYC 2 cut(s) 183, 1006
Eco32I GATATC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 334
Eco91I GGTNACC 1 cut(s) 547
EcoICRI GAGCTC 1 cut(s) 181
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoO65I GGTNACC 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 489
EcoRV GATATC 1 cut(s) 142
EcoT14I CCWWGG 3 cut(s) 401, 525, 636
EcoT22I ATGCAT 1 cut(s) 655
EcoT38I GRGCYC 2 cut(s) 183, 1006
ErhI CCWWGG 3 cut(s) 401, 525, 636
FaqI GGGAC 2 cut(s) 491, 755
FauNDI CATATG 2 cut(s) 71, 460
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 160, 444, 1023, 1058
FokI GGATG 3 cut(s) 302, 478, 1017
FriOI GRGCYC 2 cut(s) 183, 1006
Fsp4HI GCNGC 4 cut(s) 160, 444, 1023, 1058
FspBI CTAG 2 cut(s) 128, 531
GluI GCNGC 4 cut(s) 160, 444, 1023, 1058
GsaI CCCAGC 1 cut(s) 49
GsuI CTGGAG 2 cut(s) 756, 823
HaeIII GGCC 3 cut(s) 159, 635, 641
HapII CCGG 3 cut(s) 255, 764, 975
HgaI GACGC 1 cut(s) 326
HincII GTYRAC 2 cut(s) 279, 1075
HindII GTYRAC 2 cut(s) 279, 1075
HinfI GANTC 2 cut(s) 815, 923
HpaI GTTAAC 1 cut(s) 1075
HpaII CCGG 3 cut(s) 255, 764, 975
HphI GGTGA 5 cut(s) 41, 194, 335, 559, 889
Hpy166II GTNNAC 5 cut(s) 134, 226, 250, 279, 1075
Hpy188I TCNGA 2 cut(s) 178, 1018
Hpy188III TCNNGA 1 cut(s) 920
Hpy8I GTNNAC 5 cut(s) 134, 226, 250, 279, 1075
HpyAV CCTTC 2 cut(s) 293, 358
HpyCH4III ACNGT 4 cut(s) 676, 942, 1046, 1072
HpyF10VI GCNNNNNNNGC 3 cut(s) 1087, 1096, 1105
HpyF3I CTNAG 3 cut(s) 177, 324, 1005
KspAI GTTAAC 1 cut(s) 1075
Kzo9I GATC 4 cut(s) 340, 682, 703, 916
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 2 cut(s) 333, 493
Lsp1109I GCAGC 2 cut(s) 1034, 1069
LweI GCATC 6 cut(s) 267, 511, 640, 760, 1009, 1044
MaeI CTAG 2 cut(s) 128, 531
MaeIII GTNAC 3 cut(s) 391, 547, 558
MalI GATC 4 cut(s) 342, 684, 705, 918
MboI GATC 4 cut(s) 340, 682, 703, 916
MboII GAAGA 5 cut(s) 44, 44, 308, 824, 877
MfeI CAATTG 2 cut(s) 120, 927
MhlI GDGCHC 2 cut(s) 183, 1006
MlsI TGGCCA 1 cut(s) 635
MluCI AATT 5 cut(s) 120, 198, 663, 774, 927
MluNI TGGCCA 1 cut(s) 635
MlyI GAGTC 1 cut(s) 809
MmeI TCCRAC 1 cut(s) 1058
MnlI CCTC 9 cut(s) 119, 242, 286, 341, 580, 731, 745, 771, 838
Mox20I TGGCCA 1 cut(s) 635
Mph1103I ATGCAT 1 cut(s) 655
MscI TGGCCA 1 cut(s) 635
MseI TTAA 5 cut(s) 336, 450, 564, 593, 1074
MslI CAYNNNNRTG 2 cut(s) 890, 956
Msp20I TGGCCA 1 cut(s) 635
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 3 cut(s) 255, 764, 975
MspR9I CCNGG 1 cut(s) 491
MunI CAATTG 2 cut(s) 120, 927
Mva1269I GAATGC 2 cut(s) 37, 653
MvaI CCWGG 1 cut(s) 491
MwoI GCNNNNNNNGC 3 cut(s) 1087, 1096, 1105
NcoI CCATGG 2 cut(s) 401, 525
NdeI CATATG 2 cut(s) 71, 460
NdeII GATC 4 cut(s) 340, 682, 703, 916
NlaIV GGNNCC 3 cut(s) 77, 425, 495
NmuCI GTSAC 2 cut(s) 391, 547
NsiI ATGCAT 1 cut(s) 655
NspI RCATGY 3 cut(s) 695, 748, 1029
PaeI GCATGC 1 cut(s) 1029
PciI ACATGT 2 cut(s) 691, 744
PciSI GCTCTTC 1 cut(s) 27
PctI GAATGC 2 cut(s) 37, 653
PfeI GAWTC 1 cut(s) 923
PkrI GCNGC 4 cut(s) 161, 445, 1024, 1059
PleI GAGTC 1 cut(s) 809
PpsI GAGTC 1 cut(s) 809
PscI ACATGT 2 cut(s) 691, 744
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 489
PspEI GGTNACC 1 cut(s) 547
PspFI CCCAGC 1 cut(s) 45
PspGI CCWGG 1 cut(s) 489
PspN4I GGNNCC 3 cut(s) 77, 425, 495
PspPI GGNCC 1 cut(s) 247
PsrI GAACNNNNNNTAC 2 cut(s) 117, 149
RsaI GTAC 1 cut(s) 678
RsaNI GTAC 1 cut(s) 677
RseI CAYNNNNRTG 2 cut(s) 890, 956
SacI GAGCTC 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 5 cut(s) 336, 450, 564, 593, 1074
SatI GCNGC 4 cut(s) 160, 444, 1023, 1058
Sau3AI GATC 4 cut(s) 340, 682, 703, 916
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 1 cut(s) 809
ScrFI CCNGG 1 cut(s) 491
SduI GDGCHC 2 cut(s) 183, 1006
SfaNI GCATC 6 cut(s) 267, 511, 640, 760, 1009, 1044
SfcI CTRYAG 1 cut(s) 481
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 2 cut(s) 890, 956
SmlI CTYRAG 3 cut(s) 60, 335, 830
SmoI CTYRAG 3 cut(s) 60, 335, 830
SphI GCATGC 1 cut(s) 1029
Sse9I AATT 5 cut(s) 120, 198, 663, 774, 927
SsiI CCGC 3 cut(s) 160, 229, 443
SspMI CTAG 2 cut(s) 128, 531
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 489
StyI CCWWGG 3 cut(s) 401, 525, 636
TaaI ACNGT 4 cut(s) 676, 942, 1046, 1072
TaqI TCGA 1 cut(s) 585
TasI AATT 5 cut(s) 120, 198, 663, 774, 927
TauI GCSGC 2 cut(s) 162, 446
TfiI GAWTC 1 cut(s) 923
Tru1I TTAA 5 cut(s) 336, 450, 564, 593, 1074
Tru9I TTAA 5 cut(s) 336, 450, 564, 593, 1074
TscAI CASTG 2 cut(s) 226, 1110
TseFI GTSAC 2 cut(s) 391, 547
TseI GCWGC 2 cut(s) 1022, 1057
Tsp45I GTSAC 2 cut(s) 391, 547
TspDTI ATGAA 6 cut(s) 82, 428, 825, 908, 1005, 1098
TspRI CASTG 2 cut(s) 226, 1110
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 247
XagI CCTNNNNNAGG 1 cut(s) 335
XceI RCATGY 3 cut(s) 695, 748, 1029
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 133
XspI CTAG 2 cut(s) 128, 531
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.