pycom01g07640
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
8600698 .. 8603164
2467 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g07640.3

Sequence Viewer

Length: 1155 bp
ATGGGTTTGAGTGATGGTGGAGTGGGTGCCACTAGTCATGAGCTTCTTGGAGCTCAAGCTCAGATTTGGAACCACATGTTCCAGTTCATAAACTCAATGGCACTCAAATGTGCAGTTCAACTAGGCATCCCAGATGTGATTCACAACCACGGCCAACGCATCTCTCTTTCCGAGCTCGTCGCTGCGCTCAATGTCCACCCTTCAAGAGCTCATTTCGTCTCACGCCTGATGCGCATCCTCGTTCACTCTGATTTCTTTGCACAACATCATCATGTTCATCATGATTGTGACGATGTGGAGGATGAAGAAGCTGTTGTATTGTATAGCCTAACATCAACTTCTAGGCTTCTTCTCAAAGACGGGCCATCAAACACCACACCACTTATACTCATGATACTCGATCCGGTAATGACAACCCCATTTCACTTGATGGGAGCTTGGTTGCAGATGAACGGTGGTGATGATCCAGCTACTATATGTACACCATTTAAAATGGAAAATGGAATGCCTTGTTGGGATTTTGCAGCTCAGGAACCAAGGTTCGGTAACTTGTTTGATGAAGCAATGGAGGCTGACTCCAAGCTTATCGGAAGGGAGGTGGTGGAAAAGTGTGGAGGAGTTTTTGAGGGCTTGAAATCCCTGGTGGATGTTGGAGGAGGAACAGGAACCATGGCCAAGGCCATTGCCAATGCATTCCCCAGCATCAACTGCATTGTGTTTGACCAACCACATGTGGTGGCTGACTTGCAAGGAACCACCCATAATTTGGGTTTTGTGGGGGGAGACATGTTTGTGGAAATACCCCCAGCAAATGCAATTTTGCTCAAGTGGATTTTGCATGATTGGAGCGATGAAGAAAGCGTGAAGATATTGAAGAAGTGTAGAGAAGCAATACTTCCGAGCAAAAACGATGAAGGGAATAAAAAGATTATCATCATAGACATAGTTGTGGGACATGTCGATAACAAGGAGAAAATGGTGGATAAGAAATCCATTGAAACCCAACTGATGTTTGATATGCTGATGATGTCTACCGTCACTGGCAAAGAGCGTAGCGAATCAGAATGGAAAAAAATCTTTTTGGCTGCTGGTTTCACTCACTATAACATCACTCATACGTTCGGTTTCAGGTCTCTTATTGAACTTTACCCTTGA

Protein Analysis

385

Amino Acids

42.53

Weight (kDa)

5.5

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 766
AccI GTMKAC 1 cut(s) 1031
AclWI GGATC 2 cut(s) 395, 458
AcoI YGGCCR 2 cut(s) 151, 672
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 2 cut(s) 542, 766
AflIII ACRYGT 4 cut(s) 75, 730, 786, 955
AgsI TTSAA 6 cut(s) 119, 204, 634, 874, 998, 1142
AhlI ACTAGT 1 cut(s) 32
AjnI CCWGG 1 cut(s) 639
AjuI GAANNNNNNNTTGG 2 cut(s) 496, 528
AloI GAACNNNNNNTCC 2 cut(s) 524, 556
Alw21I GWGCWC 3 cut(s) 55, 177, 211
Alw26I GTCTC 3 cut(s) 223, 777, 1137
AlwI GGATC 2 cut(s) 395, 458
AoxI GGCC 4 cut(s) 151, 362, 672, 678
ApeKI GCWGC 3 cut(s) 182, 524, 1085
AspLEI GCGC 2 cut(s) 187, 234
AspS9I GGNCC 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 470
BalI TGGCCA 1 cut(s) 674
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 3 cut(s) 55, 177, 211
Bbv12I GWGCWC 3 cut(s) 55, 177, 211
BbvI GCAGC 3 cut(s) 169, 536, 1072
BccI CCATC 3 cut(s) 8, 373, 424
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 641
BcoDI GTCTC 3 cut(s) 223, 777, 1137
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 3 cut(s) 33, 122, 342
BisI GCNGC 3 cut(s) 183, 525, 1086
BlsI GCNGC 3 cut(s) 184, 526, 1087
Bme1390I CCNGG 1 cut(s) 641
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 5 cut(s) 28, 71, 534, 667, 754
BmrFI CCNGG 1 cut(s) 641
BmsI GCATC 5 cut(s) 135, 168, 219, 243, 711
BplI GAGNNNNNCTC 2 cut(s) 560, 592
Bpu10I CCTNAGC 1 cut(s) 528
BpuEI CTTGAG 2 cut(s) 39, 809
BsaBI GATNNNNATC 2 cut(s) 233, 932
BsaI GGTCTC 1 cut(s) 1137
BsaJI CCNNGG 5 cut(s) 148, 536, 639, 669, 675
BsaWI WCCGGW 1 cut(s) 403
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 766
Bse1I ACTGG 2 cut(s) 82, 1045
Bse3DI GCAATG 2 cut(s) 570, 681
Bse8I GATNNNNATC 2 cut(s) 233, 932
BseBI CCWGG 1 cut(s) 641
BseDI CCNNGG 5 cut(s) 148, 536, 639, 669, 675
BseGI GGATG 4 cut(s) 126, 234, 307, 652
BseJI GATNNNNATC 2 cut(s) 233, 932
BseLI CCNNNNNNNGG 2 cut(s) 542, 766
BseMI GCAATG 2 cut(s) 570, 681
BseMII CTCAG 2 cut(s) 74, 542
BseNI ACTGG 2 cut(s) 82, 1045
BseRI GAGGAG 2 cut(s) 630, 669
BseXI GCAGC 3 cut(s) 169, 536, 1072
BseYI CCCAGC 2 cut(s) 698, 805
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 4 cut(s) 153, 364, 674, 680
BshNI GGYRCC 1 cut(s) 26
BsiHKAI GWGCWC 3 cut(s) 55, 177, 211
BsiSI CCGG 1 cut(s) 404
BslFI GGGAC 1 cut(s) 966
BslI CCNNNNNNNGG 2 cut(s) 542, 766
BsmAI GTCTC 3 cut(s) 223, 777, 1137
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 966
BsmI GAATGC 2 cut(s) 510, 692
BsnI GGCC 4 cut(s) 153, 364, 674, 680
Bso31I GGTCTC 1 cut(s) 1137
Bsp1286I GDGCHC 3 cut(s) 55, 177, 211
Bsp1407I TGTACA 1 cut(s) 479
Bsp143I GATC 2 cut(s) 400, 463
Bsp19I CCATGG 1 cut(s) 669
BspANI GGCC 4 cut(s) 153, 364, 674, 680
BspCNI CTCAG 2 cut(s) 73, 541
BspHI TCATGA 3 cut(s) 37, 280, 390
BspLI GGNNCC 5 cut(s) 28, 71, 534, 667, 754
BspPI GGATC 2 cut(s) 395, 458
BspT107I GGYRCC 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 1137
BsrDI GCAATG 2 cut(s) 570, 681
BsrGI TGTACA 1 cut(s) 479
BsrI ACTGG 2 cut(s) 82, 1045
BssECI CCNNGG 5 cut(s) 148, 536, 639, 669, 675
BssMI GATC 2 cut(s) 400, 463
BssT1I CCWWGG 3 cut(s) 536, 669, 675
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 2 cut(s) 455, 1036
BstAPI GCANNNNNTGC 1 cut(s) 708
BstAUI TGTACA 1 cut(s) 479
BstDEI CTNAG 2 cut(s) 60, 528
BstDSI CCRYGG 2 cut(s) 148, 669
BstF5I GGATG 4 cut(s) 126, 234, 307, 652
BstHHI GCGC 2 cut(s) 187, 234
BstKTI GATC 2 cut(s) 403, 466
BstMAI GTCTC 3 cut(s) 223, 777, 1137
BstMBI GATC 2 cut(s) 400, 463
BstMWI GCNNNNNNNGC 3 cut(s) 231, 569, 708
BstNI CCWGG 1 cut(s) 641
BstNSI RCATGY 4 cut(s) 79, 734, 790, 959
BstSCI CCNGG 1 cut(s) 639
BstV1I GCAGC 3 cut(s) 169, 536, 1072
BsuRI GGCC 4 cut(s) 153, 364, 674, 680
BtgI CCRYGG 2 cut(s) 148, 669
BtgZI GCGATG 1 cut(s) 864
BtsCI GGATG 4 cut(s) 126, 234, 307, 652
BtsIMutI CAGTG 1 cut(s) 1038
CciI TCATGA 3 cut(s) 37, 280, 390
CfoI GCGC 2 cut(s) 187, 234
Cfr13I GGNCC 1 cut(s) 362
Csp6I GTAC 1 cut(s) 480
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 2 cut(s) 60, 528
DpnI GATC 2 cut(s) 402, 465
DpnII GATC 2 cut(s) 400, 463
DraI TTTAAA 1 cut(s) 490
EaeI YGGCCR 2 cut(s) 151, 672
Ecl136II GAGCTC 3 cut(s) 53, 175, 209
Eco130I CCWWGG 3 cut(s) 536, 669, 675
Eco24I GRGCYC 3 cut(s) 55, 177, 211
Eco31I GGTCTC 1 cut(s) 1137
Eco53kI GAGCTC 3 cut(s) 53, 175, 209
EcoICRI GAGCTC 3 cut(s) 53, 175, 209
EcoRII CCWGG 1 cut(s) 639
EcoT14I CCWWGG 3 cut(s) 536, 669, 675
EcoT22I ATGCAT 1 cut(s) 694
EcoT38I GRGCYC 3 cut(s) 55, 177, 211
ErhI CCWWGG 3 cut(s) 536, 669, 675
Esp3I CGTCTC 1 cut(s) 223
FalI AAGNNNNNCTT 2 cut(s) 879, 911
FaqI GGGAC 1 cut(s) 966
FblI GTMKAC 1 cut(s) 1031
Fnu4HI GCNGC 3 cut(s) 183, 525, 1086
FokI GGATG 4 cut(s) 113, 221, 314, 659
FriOI GRGCYC 3 cut(s) 55, 177, 211
Fsp4HI GCNGC 3 cut(s) 183, 525, 1086
FspAI RTGCGCAY 1 cut(s) 233
FspBI CTAG 3 cut(s) 33, 122, 342
FspI TGCGCA 1 cut(s) 233
GlaI GCGC 2 cut(s) 186, 233
GluI GCNGC 3 cut(s) 183, 525, 1086
GsaI CCCAGC 2 cut(s) 702, 809
HaeIII GGCC 4 cut(s) 153, 364, 674, 680
HapII CCGG 1 cut(s) 404
HhaI GCGC 2 cut(s) 187, 234
Hin6I GCGC 2 cut(s) 185, 232
HinP1I GCGC 2 cut(s) 185, 232
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 3 cut(s) 139, 575, 1058
HpaII CCGG 1 cut(s) 404
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 4 cut(s) 196, 244, 482, 1032
Hpy188I TCNGA 6 cut(s) 63, 172, 250, 590, 900, 1063
Hpy188III TCNNGA 5 cut(s) 38, 204, 281, 391, 530
Hpy8I GTNNAC 4 cut(s) 196, 244, 482, 1032
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 3 cut(s) 210, 585, 908
HpyCH4III ACNGT 2 cut(s) 455, 1036
HpyCH4IV ACGT 1 cut(s) 1118
HpyCH4V TGCA 9 cut(s) 113, 260, 445, 524, 692, 711, 748, 815, 838
HpyF10VI GCNNNNNNNGC 3 cut(s) 231, 569, 708
HpyF3I CTNAG 2 cut(s) 60, 528
HpySE526I ACGT 1 cut(s) 1118
HspAI GCGC 2 cut(s) 185, 232
Kzo9I GATC 2 cut(s) 400, 463
LmnI GCTCC 3 cut(s) 50, 434, 846
Lsp1109I GCAGC 3 cut(s) 169, 536, 1072
LweI GCATC 5 cut(s) 135, 168, 219, 243, 711
MaeI CTAG 3 cut(s) 33, 122, 342
MaeII ACGT 1 cut(s) 1118
MaeIII GTNAC 3 cut(s) 287, 545, 1036
MalI GATC 2 cut(s) 402, 465
MboI GATC 2 cut(s) 400, 463
MboII GAAGA 5 cut(s) 317, 341, 866, 877, 886
MhlI GDGCHC 3 cut(s) 55, 177, 211
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 2 cut(s) 763, 816
MluNI TGGCCA 1 cut(s) 674
MlyI GAGTC 1 cut(s) 569
MmeI TCCRAC 1 cut(s) 631
MnlI CCTC 8 cut(s) 248, 292, 562, 589, 608, 619, 647, 650
Mox20I TGGCCA 1 cut(s) 674
Mph1103I ATGCAT 1 cut(s) 694
MscI TGGCCA 1 cut(s) 674
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 5 cut(s) 106, 270, 285, 791, 947
Msp20I TGGCCA 1 cut(s) 674
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 1 cut(s) 641
Mva1269I GAATGC 2 cut(s) 510, 692
MvaI CCWGG 1 cut(s) 641
MwoI GCNNNNNNNGC 3 cut(s) 231, 569, 708
NcoI CCATGG 1 cut(s) 669
NdeII GATC 2 cut(s) 400, 463
NlaIV GGNNCC 5 cut(s) 28, 71, 534, 667, 754
NmuCI GTSAC 2 cut(s) 287, 1036
NsbI TGCGCA 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 4 cut(s) 79, 734, 790, 959
PagI TCATGA 3 cut(s) 37, 280, 390
PciI ACATGT 4 cut(s) 75, 730, 786, 955
PctI GAATGC 2 cut(s) 510, 692
PfeI GAWTC 2 cut(s) 139, 1058
PflMI CCANNNNNTGG 1 cut(s) 766
PkrI GCNGC 3 cut(s) 184, 526, 1087
PleI GAGTC 1 cut(s) 569
PpsI GAGTC 1 cut(s) 569
PscI ACATGT 4 cut(s) 75, 730, 786, 955
Psp124BI GAGCTC 3 cut(s) 55, 177, 211
Psp6I CCWGG 1 cut(s) 639
PspFI CCCAGC 2 cut(s) 698, 805
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 5 cut(s) 28, 71, 534, 667, 754
PspPI GGNCC 1 cut(s) 362
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
RseI CAYNNNNRTG 5 cut(s) 106, 270, 285, 791, 947
SacI GAGCTC 3 cut(s) 55, 177, 211
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 3 cut(s) 183, 525, 1086
Sau3AI GATC 2 cut(s) 400, 463
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 1 cut(s) 569
ScrFI CCNGG 1 cut(s) 641
SduI GDGCHC 3 cut(s) 55, 177, 211
SfaNI GCATC 5 cut(s) 135, 168, 219, 243, 711
SmiMI CAYNNNNRTG 5 cut(s) 106, 270, 285, 791, 947
SmlI CTYRAG 2 cut(s) 54, 824
SmoI CTYRAG 2 cut(s) 54, 824
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 2 cut(s) 763, 816
SspMI CTAG 3 cut(s) 33, 122, 342
SstI GAGCTC 3 cut(s) 55, 177, 211
StyD4I CCNGG 1 cut(s) 639
StyI CCWWGG 3 cut(s) 536, 669, 675
TaaI ACNGT 2 cut(s) 455, 1036
TaiI ACGT 1 cut(s) 1121
TaqI TCGA 2 cut(s) 399, 960
TasI AATT 2 cut(s) 763, 816
TatI WGTACW 1 cut(s) 479
TfiI GAWTC 2 cut(s) 139, 1058
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 1045
TseFI GTSAC 2 cut(s) 287, 1036
TseI GCWGC 3 cut(s) 182, 524, 1085
Tsp45I GTSAC 2 cut(s) 287, 1036
TspDTI ATGAA 7 cut(s) 76, 266, 318, 464, 573, 867, 927
TspRI CASTG 1 cut(s) 1045
Van91I CCANNNNNTGG 1 cut(s) 766
XceI RCATGY 4 cut(s) 79, 734, 790, 959
XcmI CCANNNNNNNNNTGG 1 cut(s) 763
XmiI GTMKAC 1 cut(s) 1031
XspI CTAG 3 cut(s) 33, 122, 342
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.