Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000692

Physical Location & Seq

Genomic Coordinates Forward (+)

47642846 .. 47643764

Gene Structure 919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG330500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAACAAACCATGGAATTACTTGAGCACTTGGTTCCAAAACAATGACCCTACGCCATTTGACACAGCACATGGGATGACATTTTGGGATTACGGGAACCATCAGCCAAGTATTGCCCATTTCTTCAATGATGCCATGGCTAGCGATGCTCGGTTGGTCACCAGCGTGATCATCGATGATTGCAAAGGAGTGTTTGAGGGATTAGAGTCATTGGTCGATGTTGGAGGTGGTACAGGAACTGTGGCAAAGGCCATTGCTGATGCATTCCCACATATTGAATGCACTGTACTTGATCTCCCACATCTGGTGGCTGACCTGCAAGGAAGTAAGAACTTGAAATATACTGGAGGTGACATGTTTGAGGCAGTTCCTCCTGCCGATACAGTTTTACTCAAGTGGATATTGCATGACTGGAATGATGAAGAATGTGTCAAAATACTTAAGCGATCTAGAGAGGCAATTACAAGCAAGGACAAGAAAGGCAAGGTGATTATCCTAGATATGATGATGGAGAACCAGAATGGGGATGAGGAATCAATTGAAACGCAGCTGTTCTTCGACATGCTGATGATGGCACTCATCACAGGAAAAGAAAGGAATGAGAAAGAATGGGCTAAGCTCTTCACTGATGCCGGTTTCAGTGACTATAAGATAACTCCCATTTTGGGTTTAAGGTCTCTCATTGAGGTTTATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009812 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030761 GO:0032259 GO:0044237 GO:0044249 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

232

Amino Acids

26.1

Weight (kDa)

4.7

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_2	PF00891	5 - 214	4.7e-58	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26800 FvH4_6g26810
malus_domestica	MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica	Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis	pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis	RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata	RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora	Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa	Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha	Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana	Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	324
AfaI	GTAC	2 cut(s)	232, 288
AfiI	CCNNNNNNNGG	3 cut(s)	304, 523, 665
AflII	CTTAAG	1 cut(s)	440
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	4 cut(s)	127, 278, 337, 542
AleI	CACNNNNGTG	1 cut(s)	164
AluBI	AGCT	2 cut(s)	550, 619
AluI	AGCT	2 cut(s)	550, 619
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	681
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	547
AsuHPI	GGTGA	3 cut(s)	151, 362, 499
AsuNHI	GCTAGC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	3 cut(s)	108, 502, 565
BclI	TGATCA	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	681
BfaI	CTAG	3 cut(s)	141, 450, 497
BfrI	CTTAAG	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	324
BisI	GCNGC	1 cut(s)	548
BlpI	GCTNAGC	1 cut(s)	615
BlsI	GCNGC	1 cut(s)	549
BmiI	GGNNCC	2 cut(s)	35, 98
BmsI	GCATC	4 cut(s)	121, 136, 250, 619
BmtI	GCTAGC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	2 cut(s)	43, 377
Bsa29I	ATCGAT	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	681
BsaJI	CCNNGG	2 cut(s)	11, 135
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	304, 523, 665
Bse118I	RCCGGY	1 cut(s)	632
Bse1I	ACTGG	2 cut(s)	349, 416
Bse3DI	GCAATG	1 cut(s)	252
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	11, 135
BseGI	GGATG	2 cut(s)	81, 532
BseLI	CCNNNNNNNGG	3 cut(s)	304, 523, 665
BseMI	GCAATG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	349, 416
BseXI	GCAGC	1 cut(s)	559
BshFI	GGCC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	633
BslI	CCNNNNNNNGG	3 cut(s)	304, 523, 665
BsmAI	GTCTC	1 cut(s)	681
BsmI	GAATGC	2 cut(s)	263, 284
BsnI	GGCC	1 cut(s)	251
Bso31I	GGTCTC	1 cut(s)	681
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	168, 292, 446
Bsp1720I	GCTNAGC	1 cut(s)	615
Bsp19I	CCATGG	2 cut(s)	11, 135
BspANI	GGCC	1 cut(s)	251
BspDI	ATCGAT	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	35, 98
BspMI	ACCTGC	1 cut(s)	324
BspOI	GCTAGC	1 cut(s)	144
BspQI	GCTCTTC	1 cut(s)	626
BspTI	CTTAAG	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	681
BsrDI	GCAATG	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	632
BsrI	ACTGG	2 cut(s)	349, 416
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	2 cut(s)	11, 135
BssMI	GATC	3 cut(s)	168, 292, 446
BssT1I	CCWWGG	2 cut(s)	11, 135
Bst4CI	ACNGT	3 cut(s)	241, 286, 385
Bst6I	CTCTTC	1 cut(s)	626
BstAFI	CTTAAG	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	615
BstDSI	CCRYGG	2 cut(s)	11, 135
BstEII	GGTNACC	1 cut(s)	157
BstF5I	GGATG	2 cut(s)	81, 532
BstKTI	GATC	3 cut(s)	171, 295, 449
BstMAI	GTCTC	1 cut(s)	681
BstMBI	GATC	3 cut(s)	168, 292, 446
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNSI	RCATGY	2 cut(s)	358, 565
BstPI	GGTNACC	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	559
Bsu15I	ATCGAT	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	251
BsuTUI	ATCGAT	1 cut(s)	174
BtgI	CCRYGG	2 cut(s)	11, 135
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	81, 532
BtsIMutI	CAGTG	3 cut(s)	282, 624, 646
BveI	ACCTGC	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	142
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr10I	RCCGGY	1 cut(s)	632
ClaI	ATCGAT	1 cut(s)	174
Csp6I	GTAC	2 cut(s)	231, 287
CviAII	CATG	6 cut(s)	12, 71, 136, 355, 407, 562
CviJI	RGCY	7 cut(s)	106, 140, 251, 311, 550, 614, 619
CviKI_1	RGCY	7 cut(s)	106, 140, 251, 311, 550, 614, 619
CviQI	GTAC	2 cut(s)	231, 287
DdeI	CTNAG	1 cut(s)	615
DpnI	GATC	3 cut(s)	170, 294, 448
DpnII	GATC	3 cut(s)	168, 292, 446
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
Eco130I	CCWWGG	2 cut(s)	11, 135
Eco31I	GGTCTC	1 cut(s)	681
Eco91I	GGTNACC	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	157
EcoT14I	CCWWGG	2 cut(s)	11, 135
EcoT22I	ATGCAT	1 cut(s)	265
ErhI	CCWWGG	2 cut(s)	11, 135
FaeI	CATG	6 cut(s)	15, 74, 139, 358, 410, 565
FatI	CATG	6 cut(s)	11, 70, 135, 354, 406, 561
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	548
FokI	GGATG	2 cut(s)	88, 539
Fsp4HI	GCNGC	1 cut(s)	548
FspBI	CTAG	3 cut(s)	141, 450, 497
GluI	GCNGC	1 cut(s)	548
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	1 cut(s)	633
Hin1II	CATG	6 cut(s)	15, 74, 139, 358, 410, 565
HinfI	GANTC	2 cut(s)	206, 533
HpaII	CCGG	1 cut(s)	633
HphI	GGTGA	3 cut(s)	151, 362, 499
Hpy188III	TCNNGA	1 cut(s)	450
HpyCH4III	ACNGT	3 cut(s)	241, 286, 385
HpyCH4V	TGCA	5 cut(s)	183, 263, 282, 319, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	615
Hsp92II	CATG	6 cut(s)	15, 74, 139, 358, 410, 565
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	3 cut(s)	168, 292, 446
LguI	GCTCTTC	1 cut(s)	626
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	4 cut(s)	121, 136, 250, 619
MaeI	CTAG	3 cut(s)	141, 450, 497
MaeIII	GTNAC	3 cut(s)	157, 350, 641
MalI	GATC	3 cut(s)	170, 294, 448
MboI	GATC	3 cut(s)	168, 292, 446
MboII	GAAGA	4 cut(s)	115, 434, 547, 613
MfeI	CAATTG	1 cut(s)	537
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	3 cut(s)	16, 459, 537
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	8 cut(s)	190, 218, 341, 355, 381, 448, 523, 679
Mph1103I	ATGCAT	1 cut(s)	265
MseI	TTAA	2 cut(s)	441, 671
MslI	CAYNNNNRTG	2 cut(s)	164, 566
MspA1I	CMGCKG	1 cut(s)	550
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	1 cut(s)	633
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	2 cut(s)	263, 284
MwoI	GCNNNNNNNGC	1 cut(s)	146
NcoI	CCATGG	2 cut(s)	11, 135
NdeII	GATC	3 cut(s)	168, 292, 446
NheI	GCTAGC	1 cut(s)	140
NlaIII	CATG	6 cut(s)	15, 74, 139, 358, 410, 565
NlaIV	GGNNCC	2 cut(s)	35, 98
NmuCI	GTSAC	3 cut(s)	157, 350, 641
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	2 cut(s)	358, 565
OliI	CACNNNNGTG	1 cut(s)	164
PciI	ACATGT	1 cut(s)	354
PciSI	GCTCTTC	1 cut(s)	626
PctI	GAATGC	2 cut(s)	263, 284
PfeI	GAWTC	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	549
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PscI	ACATGT	1 cut(s)	354
PspEI	GGTNACC	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	35, 98
PstNI	CAGNNNCTG	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	550
RsaI	GTAC	2 cut(s)	232, 288
RsaNI	GTAC	2 cut(s)	231, 287
RseI	CAYNNNNRTG	2 cut(s)	164, 566
SapI	GCTCTTC	1 cut(s)	626
SaqAI	TTAA	2 cut(s)	441, 671
SatI	GCNGC	1 cut(s)	548
Sau3AI	GATC	3 cut(s)	168, 292, 446
SchI	GAGTC	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	8 cut(s)	229, 318, 352, 489, 552, 621, 677, 690
SfaNI	GCATC	4 cut(s)	121, 136, 250, 619
SmiMI	CAYNNNNRTG	2 cut(s)	164, 566
SmlI	CTYRAG	3 cut(s)	22, 392, 440
SmoI	CTYRAG	3 cut(s)	22, 392, 440
Sse9I	AATT	3 cut(s)	16, 459, 537
SspMI	CTAG	3 cut(s)	141, 450, 497
StyI	CCWWGG	2 cut(s)	11, 135
TaaI	ACNGT	3 cut(s)	241, 286, 385
TaqI	TCGA	3 cut(s)	174, 216, 558
TasI	AATT	3 cut(s)	16, 459, 537
TatI	WGTACW	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	2 cut(s)	441, 671
Tru9I	TTAA	2 cut(s)	441, 671
TscAI	CASTG	3 cut(s)	289, 631, 646
TseFI	GTSAC	3 cut(s)	157, 350, 641
TseI	GCWGC	1 cut(s)	547
Tsp45I	GTSAC	3 cut(s)	157, 350, 641
TspDTI	ATGAA	2 cut(s)	17, 435
TspRI	CASTG	3 cut(s)	289, 631, 646
Vha464I	CTTAAG	1 cut(s)	440
XbaI	TCTAGA	1 cut(s)	449
XceI	RCATGY	2 cut(s)	358, 565
XspI	CTAG	3 cut(s)	141, 450, 497
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.