Rh2DG356000
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
50050707 .. 50052363
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG356000.1

Sequence Viewer

Length: 1140 bp
ATGTGTTCTGATATACAACACACTGAGTTGATCAATATGGAAAGGATAAACAGCTTTAGACACCTTAACCAAAAATGGTCAAATGGAGAGCATTCCAACGAGCTACTTCATGCTCAAGCCCATATCTGGAACCACATCTTCAGCTTCATAAACTCCATGTCCCTCAAATCTGCAATTCAACTAGGTATACCAGATATCATCAACAAACATGGCTACCCCATGACTCTTTCTGAGCTCACATCTGCACTACCAATCCACCCAACCAAATCCCACAGCATCTACCGCCTCATGCGAATATTGGTGCACTCTGGCTTCTTTGCTAAGAAAAAGCTGAGTAAAACTGATGAGGAAGGTTATACCCTTACTGATGCTTCCCAGCTCCTTCTGAAGGATCATCCCTTAAGCCTAACGCCCTTCTTAACTGCCATGCTCGACCCTGTTTTGACTAAACCATGGAATTACTTGAGCACTTGGTTCCAAAACGATGACCCTACGCCATTTGACACAGCACATGGGATGACATTTTGGGATTACGGGAACCATCAGCCAAGTATTGCCCATTTCTTCAACGATGCCATGGCTAGCGATGCTCGGTTGGTCACCAGCGTGATCATCGATGATTGCAAAGGAGTGTTTGAGGGATTAGAGTCATTGGTCGATGTTGGAGGTGGTACAGGAACTGTGGCAAAGGCCATTGCTGATGCATTCCCACATATTGAATGCACTGTACTTGATCTCCCACATGTGGTGGCTGACCTGCAAGGAAGTAAGAACTTGAAATATACTGGAGGTGACATGTTTGAGGCAGTTCCTCCTGCCGATACAGTTTTACTCAAGTGGATATTGCATGACTGGAACGATGAAGAATGTGTCAAAATACTTAAGCGATCTAGAGAGGCAATTACAAGCAAGGACAAGAAAGGCAAGGTGATTATCATAGATATGATGATGGAGAACCAGAAAGGCGATGAGGAATCAATTGAAACGCAGCTGTTCTTCGACATGCTGATGATGGCCCTCGTCACAGGAAAAGAAAGGAATGAGAAAGAATGGGCTAAGCTCTTCACTGATGCTGGTTTCAGTGACTATAAGATAACTCCCATTTTGGGTTTAAGGTCTCTCATTGAGGTTTATCCTTGA

Protein Analysis

379

Amino Acids

42.82

Weight (kDa)

5.54

Isoelectric Point (pI)

29.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 43 - 131 2.9e-21 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 152 - 361 4.2e-59 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 765
AccI GTMKAC 1 cut(s) 187
AciI CCGC 1 cut(s) 283
AclWI GGATC 1 cut(s) 399
AcuI CTGAAG 2 cut(s) 124, 407
AfaI GTAC 2 cut(s) 673, 729
AfiI CCNNNNNNNGG 4 cut(s) 126, 388, 745, 1106
AflII CTTAAG 2 cut(s) 400, 881
AflIII ACRYGT 2 cut(s) 742, 795
AgsI TTSAA 5 cut(s) 179, 568, 719, 778, 983
AleI CACNNNNGTG 1 cut(s) 605
AluBI AGCT 8 cut(s) 54, 103, 144, 235, 331, 379, 991, 1060
AluI AGCT 8 cut(s) 54, 103, 144, 235, 331, 379, 991, 1060
Alw21I GWGCWC 3 cut(s) 237, 306, 470
Alw26I GTCTC 1 cut(s) 1122
Alw44I GTGCAC 1 cut(s) 302
AlwI GGATC 1 cut(s) 399
AlwNI CAGNNNCTG 1 cut(s) 680
AoxI GGCC 2 cut(s) 690, 1014
ApaLI GTGCAC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 988
AspS9I GGNCC 1 cut(s) 1015
AsuHPI GGTGA 3 cut(s) 592, 803, 940
AsuNHI GCTAGC 1 cut(s) 581
BaeGI GKGCMC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 237
Bbv12I GWGCWC 3 cut(s) 237, 306, 470
BbvI GCAGC 1 cut(s) 1000
BccI CCATC 3 cut(s) 549, 943, 1006
BclI TGATCA 2 cut(s) 30, 609
BcoDI GTCTC 1 cut(s) 1122
BfaI CTAG 3 cut(s) 182, 582, 891
BfrI CTTAAG 2 cut(s) 400, 881
BfuAI ACCTGC 1 cut(s) 765
BisI GCNGC 1 cut(s) 989
BlpI GCTNAGC 1 cut(s) 1056
BlsI GCNGC 1 cut(s) 990
BmgT120I GGNCC 1 cut(s) 1015
BmiI GGNNCC 3 cut(s) 131, 476, 539
BmsI GCATC 6 cut(s) 285, 358, 562, 577, 691, 1060
BmtI GCTAGC 1 cut(s) 585
BpmI CTGGAG 1 cut(s) 807
Bpu1102I GCTNAGC 1 cut(s) 1056
BpuEI CTTGAG 3 cut(s) 99, 484, 818
Bsa29I ATCGAT 1 cut(s) 615
BsaI GGTCTC 1 cut(s) 1122
BsaJI CCNNGG 2 cut(s) 452, 576
BsaXI ACNNNNNCTCC 2 cut(s) 720, 750
Bsc4I CCNNNNNNNGG 4 cut(s) 126, 388, 745, 1106
Bse1I ACTGG 2 cut(s) 790, 857
Bse3DI GCAATG 1 cut(s) 693
BseCI ATCGAT 1 cut(s) 615
BseDI CCNNGG 2 cut(s) 452, 576
BseGI GGATG 2 cut(s) 394, 522
BseLI CCNNNNNNNGG 4 cut(s) 126, 388, 745, 1106
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 3 cut(s) 15, 222, 323
BseNI ACTGG 2 cut(s) 790, 857
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 1000
BseYI CCCAGC 1 cut(s) 375
BsgI GTGCAG 1 cut(s) 228
BshFI GGCC 2 cut(s) 692, 1016
BshVI ATCGAT 1 cut(s) 615
BsiHKAI GWGCWC 3 cut(s) 237, 306, 470
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 4 cut(s) 126, 388, 745, 1106
BsmAI GTCTC 1 cut(s) 1122
BsmFI GGGAC 1 cut(s) 145
BsmI GAATGC 3 cut(s) 91, 704, 725
BsnI GGCC 2 cut(s) 692, 1016
Bso31I GGTCTC 1 cut(s) 1122
Bsp1286I GDGCHC 3 cut(s) 237, 306, 470
Bsp143I GATC 5 cut(s) 30, 391, 609, 733, 887
Bsp1720I GCTNAGC 1 cut(s) 1056
Bsp19I CCATGG 2 cut(s) 452, 576
BspACI CCGC 1 cut(s) 283
BspANI GGCC 2 cut(s) 692, 1016
BspCNI CTCAG 3 cut(s) 16, 223, 324
BspDI ATCGAT 1 cut(s) 615
BspLI GGNNCC 3 cut(s) 131, 476, 539
BspMI ACCTGC 1 cut(s) 765
BspOI GCTAGC 1 cut(s) 585
BspPI GGATC 1 cut(s) 399
BspQI GCTCTTC 1 cut(s) 1067
BspTI CTTAAG 2 cut(s) 400, 881
BspTNI GGTCTC 1 cut(s) 1122
BsrDI GCAATG 1 cut(s) 693
BsrI ACTGG 2 cut(s) 790, 857
BssECI CCNNGG 2 cut(s) 452, 576
BssMI GATC 5 cut(s) 30, 391, 609, 733, 887
BssNAI GTATAC 1 cut(s) 188
BssT1I CCWWGG 2 cut(s) 452, 576
Bst1107I GTATAC 1 cut(s) 188
Bst4CI ACNGT 3 cut(s) 682, 727, 826
Bst6I CTCTTC 1 cut(s) 1067
BstAFI CTTAAG 2 cut(s) 400, 881
BstC8I GCNNGC 1 cut(s) 583
BstDEI CTNAG 5 cut(s) 24, 231, 321, 332, 1056
BstDSI CCRYGG 2 cut(s) 452, 576
BstEII GGTNACC 1 cut(s) 598
BstENI CCTNNNNNAGG 1 cut(s) 386
BstF5I GGATG 2 cut(s) 394, 522
BstKTI GATC 5 cut(s) 33, 394, 612, 736, 890
BstMAI GTCTC 1 cut(s) 1122
BstMBI GATC 5 cut(s) 30, 391, 609, 733, 887
BstMWI GCNNNNNNNGC 2 cut(s) 282, 587
BstNSI RCATGY 3 cut(s) 746, 799, 1006
BstPI GGTNACC 1 cut(s) 598
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 1000
BstZ17I GTATAC 1 cut(s) 188
Bsu15I ATCGAT 1 cut(s) 615
BsuRI GGCC 2 cut(s) 692, 1016
BsuTUI ATCGAT 1 cut(s) 615
BtgI CCRYGG 2 cut(s) 452, 576
BtgZI GCGATG 2 cut(s) 600, 981
BtsCI GGATG 2 cut(s) 394, 522
BtsIMutI CAGTG 4 cut(s) 21, 723, 1065, 1087
BveI ACCTGC 1 cut(s) 765
Cac8I GCNNGC 1 cut(s) 583
CaiI CAGNNNCTG 1 cut(s) 680
Cfr13I GGNCC 1 cut(s) 1015
ClaI ATCGAT 1 cut(s) 615
Csp6I GTAC 2 cut(s) 672, 728
CviQI GTAC 2 cut(s) 672, 728
DdeI CTNAG 5 cut(s) 24, 231, 321, 332, 1056
DpnI GATC 5 cut(s) 32, 393, 611, 735, 889
DpnII GATC 5 cut(s) 30, 391, 609, 733, 887
Eam1104I CTCTTC 1 cut(s) 1067
EarI CTCTTC 1 cut(s) 1067
Ecl136II GAGCTC 1 cut(s) 235
Eco130I CCWWGG 2 cut(s) 452, 576
Eco24I GRGCYC 1 cut(s) 237
Eco31I GGTCTC 1 cut(s) 1122
Eco32I GATATC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 235
Eco57I CTGAAG 2 cut(s) 124, 407
Eco91I GGTNACC 1 cut(s) 598
EcoICRI GAGCTC 1 cut(s) 235
EcoNI CCTNNNNNAGG 1 cut(s) 386
EcoO65I GGTNACC 1 cut(s) 598
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 2 cut(s) 452, 576
EcoT22I ATGCAT 1 cut(s) 706
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 2 cut(s) 452, 576
FaqI GGGAC 1 cut(s) 145
FbaI TGATCA 2 cut(s) 30, 609
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 989
FokI GGATG 2 cut(s) 381, 529
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 989
FspBI CTAG 3 cut(s) 182, 582, 891
GluI GCNGC 1 cut(s) 989
GsaI CCCAGC 1 cut(s) 379
GsuI CTGGAG 1 cut(s) 807
HaeIII GGCC 2 cut(s) 692, 1016
HinfI GANTC 3 cut(s) 223, 647, 974
HphI GGTGA 3 cut(s) 592, 803, 940
Hpy166II GTNNAC 2 cut(s) 188, 304
Hpy188I TCNGA 3 cut(s) 10, 232, 387
Hpy188III TCNNGA 2 cut(s) 127, 891
Hpy8I GTNNAC 2 cut(s) 188, 304
HpyAV CCTTC 4 cut(s) 344, 382, 392, 424
HpyCH4III ACNGT 3 cut(s) 682, 727, 826
HpyCH4V TGCA 8 cut(s) 173, 245, 304, 624, 704, 723, 760, 847
HpyF10VI GCNNNNNNNGC 2 cut(s) 282, 587
HpyF3I CTNAG 5 cut(s) 24, 231, 321, 332, 1056
Ksp22I TGATCA 2 cut(s) 30, 609
Kzo9I GATC 5 cut(s) 30, 391, 609, 733, 887
LguI GCTCTTC 1 cut(s) 1067
LmnI GCTCC 1 cut(s) 384
Lsp1109I GCAGC 1 cut(s) 1000
LweI GCATC 6 cut(s) 285, 358, 562, 577, 691, 1060
MaeI CTAG 3 cut(s) 182, 582, 891
MaeIII GTNAC 4 cut(s) 598, 791, 1021, 1082
MalI GATC 5 cut(s) 32, 393, 611, 735, 889
MboI GATC 5 cut(s) 30, 391, 609, 733, 887
MboII GAAGA 5 cut(s) 130, 556, 875, 988, 1054
MfeI CAATTG 1 cut(s) 978
MhlI GDGCHC 3 cut(s) 237, 306, 470
MluCI AATT 4 cut(s) 174, 457, 900, 978
MlyI GAGTC 2 cut(s) 217, 656
MmeI TCCRAC 2 cut(s) 120, 643
Mph1103I ATGCAT 1 cut(s) 706
MseI TTAA 5 cut(s) 66, 401, 419, 882, 1112
MslI CAYNNNNRTG 3 cut(s) 605, 941, 1007
MspA1I CMGCKG 1 cut(s) 991
MspCI CTTAAG 2 cut(s) 400, 881
MunI CAATTG 1 cut(s) 978
Mva1269I GAATGC 3 cut(s) 91, 704, 725
MwoI GCNNNNNNNGC 2 cut(s) 282, 587
NcoI CCATGG 2 cut(s) 452, 576
NdeII GATC 5 cut(s) 30, 391, 609, 733, 887
NheI GCTAGC 1 cut(s) 581
NlaIV GGNNCC 3 cut(s) 131, 476, 539
NmuCI GTSAC 4 cut(s) 598, 791, 1021, 1082
NsiI ATGCAT 1 cut(s) 706
NspI RCATGY 3 cut(s) 746, 799, 1006
OliI CACNNNNGTG 1 cut(s) 605
PciI ACATGT 2 cut(s) 742, 795
PciSI GCTCTTC 1 cut(s) 1067
PctI GAATGC 3 cut(s) 91, 704, 725
PfeI GAWTC 1 cut(s) 974
PkrI GCNGC 1 cut(s) 990
PleI GAGTC 2 cut(s) 217, 655
PpsI GAGTC 2 cut(s) 217, 655
PscI ACATGT 2 cut(s) 742, 795
Psp124BI GAGCTC 1 cut(s) 237
PspEI GGTNACC 1 cut(s) 598
PspFI CCCAGC 1 cut(s) 375
PspN4I GGNNCC 3 cut(s) 131, 476, 539
PspPI GGNCC 1 cut(s) 1015
PstNI CAGNNNCTG 1 cut(s) 680
PvuII CAGCTG 1 cut(s) 991
RsaI GTAC 2 cut(s) 673, 729
RsaNI GTAC 2 cut(s) 672, 728
RseI CAYNNNNRTG 3 cut(s) 605, 941, 1007
SacI GAGCTC 1 cut(s) 237
SapI GCTCTTC 1 cut(s) 1067
SaqAI TTAA 5 cut(s) 66, 401, 419, 882, 1112
SatI GCNGC 1 cut(s) 989
Sau3AI GATC 5 cut(s) 30, 391, 609, 733, 887
Sau96I GGNCC 1 cut(s) 1015
SchI GAGTC 2 cut(s) 217, 656
SduI GDGCHC 3 cut(s) 237, 306, 470
SfaNI GCATC 6 cut(s) 285, 358, 562, 577, 691, 1060
SmiMI CAYNNNNRTG 3 cut(s) 605, 941, 1007
SmlI CTYRAG 5 cut(s) 114, 400, 463, 833, 881
SmoI CTYRAG 5 cut(s) 114, 400, 463, 833, 881
Sse9I AATT 4 cut(s) 174, 457, 900, 978
SsiI CCGC 1 cut(s) 283
SspI AATATT 1 cut(s) 297
SspMI CTAG 3 cut(s) 182, 582, 891
SstI GAGCTC 1 cut(s) 237
StyI CCWWGG 2 cut(s) 452, 576
TaaI ACNGT 3 cut(s) 682, 727, 826
TaqI TCGA 4 cut(s) 432, 615, 657, 999
TasI AATT 4 cut(s) 174, 457, 900, 978
TatI WGTACW 1 cut(s) 727
TfiI GAWTC 1 cut(s) 974
Tru1I TTAA 5 cut(s) 66, 401, 419, 882, 1112
Tru9I TTAA 5 cut(s) 66, 401, 419, 882, 1112
TscAI CASTG 4 cut(s) 28, 730, 1072, 1087
TseFI GTSAC 4 cut(s) 598, 791, 1021, 1082
TseI GCWGC 1 cut(s) 988
Tsp45I GTSAC 4 cut(s) 598, 791, 1021, 1082
TspDTI ATGAA 3 cut(s) 98, 136, 876
TspRI CASTG 4 cut(s) 28, 730, 1072, 1087
Vha464I CTTAAG 2 cut(s) 400, 881
VneI GTGCAC 1 cut(s) 302
XagI CCTNNNNNAGG 1 cut(s) 386
XbaI TCTAGA 1 cut(s) 890
XceI RCATGY 3 cut(s) 746, 799, 1006
XmiI GTMKAC 1 cut(s) 187
XspI CTAG 3 cut(s) 182, 582, 891
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.