RchiOBHm_Chr2g0119291
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
31652548 .. 31654236
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49203

Sequence Viewer

Length: 1101 bp
ATGGAAAGGCTAAACAGCTTTAAACACCTTAACCAAAAATGGTCAAATGGAGAGCATTCCAACGAGCTACTTCATGCTCAAGCCCACATCTGGAACCACATCTTCAGCTTCATAAACTCCATGTCCCTCAAATCTGCAATTCAACTAGGTATACCAGATATCATCAACAAACATGGCCCCATGACTCTTTCTGAGCTCACATCTGCACTACCAATCCATCCAACCAAATCCCACAGCGTCTACCGCCTCATGCGAATATTGGTGCACTCTGGCTTCTTTGCTAAGAAAAAGCTGAGTAAAACTGATGAGGAAGGTTATACCCTTACTGATGCTTCCCAGCTCCTTCTGAAGGATCATCCCTTAAGCCTAACGCCCTTCTTAACCGCCATGCTCGACCCTGTTTTGACCACACCATGGAATTACTTGAGCACTTGGTTCCAAAACGAGGACCCTACGCCATTTGACACAGCACATGGGATGACATTTTGGGATTACGGGAACCATCAGCCAAGTATTGCCCATTTGTTCAATGATGCCATGGCTAGCGATGCTCGGTTGGTCACCAGCGTGATCATCGATGATTGCAAAGGAGTGTTTGAGGGATTAGAGTCATTGGTCGATGTTGGAGGTGGTACAGGAACTGTGGCAAAGGCTATTGCTGATGCATTCCCACATATTGAATGCACTGTACTTGATCTCCCACATGTGGTGGCTGACCTGCAAGGAAGTAAGAACTTGAAATATACTGGAGGTGACATGTTTGAGGCAGTTCCTCCTGCCGATACAGTTTTACTCAAGTGGATATTGCATGACTGGAACGATGAAGAATGTATCAAAATACTTAAGCGATCTAGAGTGGCAATTACAAGCAAGGACAAGAAAGGCAAGGTGATTATCATAGATATGATGATGGAGAACCAGAAGGGGGATGAGGAATCAATTGAAACGCAGCTGTTCTTCGACATGCTGATGATGGCCCTCGTCAGAGGACAAGAAAGGAATGAGAAAGAATGGGCTAAGCTCTTCACTGATGCTGGTTTCAGTGACTATAAGATAACTCCCATTTTGGGTTTAAGGTCTCTCATTGAGGTTTATCCTTGA

Protein Analysis

366

Amino Acids

41.23

Weight (kDa)

5.63

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 31 - 118 2e-21 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 139 - 348 2.3e-58 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 726
AccB7I CCANNNNNTGG 1 cut(s) 414
AccI GTMKAC 2 cut(s) 151, 240
AciI CCGC 2 cut(s) 244, 384
AclWI GGATC 1 cut(s) 360
AcuI CTGAAG 2 cut(s) 88, 368
AfaI GTAC 2 cut(s) 634, 690
AfiI CCNNNNNNNGG 7 cut(s) 90, 349, 414, 445, 706, 925, 1067
AflII CTTAAG 2 cut(s) 361, 842
AflIII ACRYGT 2 cut(s) 703, 756
AgsI TTSAA 5 cut(s) 143, 529, 680, 739, 944
AleI CACNNNNGTG 1 cut(s) 566
AluBI AGCT 8 cut(s) 18, 67, 108, 196, 292, 340, 952, 1021
AluI AGCT 8 cut(s) 18, 67, 108, 196, 292, 340, 952, 1021
Alw21I GWGCWC 3 cut(s) 198, 267, 431
Alw26I GTCTC 1 cut(s) 1083
Alw44I GTGCAC 1 cut(s) 263
AlwI GGATC 1 cut(s) 360
AlwNI CAGNNNCTG 1 cut(s) 641
AoxI GGCC 2 cut(s) 175, 975
ApaLI GTGCAC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 949
AspS9I GGNCC 3 cut(s) 176, 448, 976
AsuHPI GGTGA 3 cut(s) 553, 764, 901
AsuNHI GCTAGC 1 cut(s) 542
AvaII GGWCC 1 cut(s) 448
BaeGI GKGCMC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 3 cut(s) 198, 267, 431
BbvI GCAGC 1 cut(s) 961
BccI CCATC 4 cut(s) 225, 510, 904, 967
BclI TGATCA 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 1083
BfaI CTAG 3 cut(s) 146, 543, 852
BfrI CTTAAG 2 cut(s) 361, 842
BfuAI ACCTGC 1 cut(s) 726
BisI GCNGC 1 cut(s) 950
BlpI GCTNAGC 1 cut(s) 1017
BlsI GCNGC 1 cut(s) 951
Bme18I GGWCC 1 cut(s) 448
BmgT120I GGNCC 3 cut(s) 176, 448, 976
BmiI GGNNCC 5 cut(s) 95, 178, 437, 450, 500
BmsI GCATC 5 cut(s) 319, 523, 538, 652, 1021
BmtI GCTAGC 1 cut(s) 546
BpmI CTGGAG 1 cut(s) 768
Bpu1102I GCTNAGC 1 cut(s) 1017
BpuEI CTTGAG 3 cut(s) 63, 445, 779
Bsa29I ATCGAT 1 cut(s) 576
BsaI GGTCTC 1 cut(s) 1083
BsaJI CCNNGG 2 cut(s) 413, 537
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 7 cut(s) 90, 349, 414, 445, 706, 925, 1067
Bse1I ACTGG 2 cut(s) 751, 818
BseCI ATCGAT 1 cut(s) 576
BseDI CCNNGG 2 cut(s) 413, 537
BseGI GGATG 4 cut(s) 217, 355, 483, 934
BseLI CCNNNNNNNGG 7 cut(s) 90, 349, 414, 445, 706, 925, 1067
BseMII CTCAG 2 cut(s) 183, 284
BseNI ACTGG 2 cut(s) 751, 818
BseSI GKGCMC 1 cut(s) 267
BseXI GCAGC 1 cut(s) 961
BseYI CCCAGC 1 cut(s) 336
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 2 cut(s) 177, 977
BshVI ATCGAT 1 cut(s) 576
BsiHKAI GWGCWC 3 cut(s) 198, 267, 431
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 7 cut(s) 90, 349, 414, 445, 706, 925, 1067
BsmAI GTCTC 1 cut(s) 1083
BsmFI GGGAC 1 cut(s) 109
BsmI GAATGC 3 cut(s) 55, 665, 686
BsnI GGCC 2 cut(s) 177, 977
Bso31I GGTCTC 1 cut(s) 1083
Bsp1286I GDGCHC 3 cut(s) 198, 267, 431
Bsp143I GATC 4 cut(s) 352, 570, 694, 848
Bsp1720I GCTNAGC 1 cut(s) 1017
Bsp19I CCATGG 2 cut(s) 413, 537
BspACI CCGC 2 cut(s) 244, 384
BspANI GGCC 2 cut(s) 177, 977
BspCNI CTCAG 2 cut(s) 184, 285
BspDI ATCGAT 1 cut(s) 576
BspLI GGNNCC 5 cut(s) 95, 178, 437, 450, 500
BspMI ACCTGC 1 cut(s) 726
BspOI GCTAGC 1 cut(s) 546
BspPI GGATC 1 cut(s) 360
BspQI GCTCTTC 1 cut(s) 1028
BspTI CTTAAG 2 cut(s) 361, 842
BspTNI GGTCTC 1 cut(s) 1083
BsrI ACTGG 2 cut(s) 751, 818
BssECI CCNNGG 2 cut(s) 413, 537
BssMI GATC 4 cut(s) 352, 570, 694, 848
BssNAI GTATAC 1 cut(s) 152
BssT1I CCWWGG 2 cut(s) 413, 537
Bst1107I GTATAC 1 cut(s) 152
Bst4CI ACNGT 3 cut(s) 643, 688, 787
Bst6I CTCTTC 1 cut(s) 1028
BstAFI CTTAAG 2 cut(s) 361, 842
BstC8I GCNNGC 1 cut(s) 544
BstDEI CTNAG 4 cut(s) 192, 282, 293, 1017
BstDSI CCRYGG 2 cut(s) 413, 537
BstEII GGTNACC 1 cut(s) 559
BstENI CCTNNNNNAGG 1 cut(s) 347
BstF5I GGATG 4 cut(s) 217, 355, 483, 934
BstKTI GATC 4 cut(s) 355, 573, 697, 851
BstMAI GTCTC 1 cut(s) 1083
BstMBI GATC 4 cut(s) 352, 570, 694, 848
BstMWI GCNNNNNNNGC 2 cut(s) 243, 548
BstNSI RCATGY 3 cut(s) 707, 760, 967
BstPI GGTNACC 1 cut(s) 559
BstSLI GKGCMC 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 961
BstZ17I GTATAC 1 cut(s) 152
Bsu15I ATCGAT 1 cut(s) 576
BsuRI GGCC 2 cut(s) 177, 977
BsuTUI ATCGAT 1 cut(s) 576
BtgI CCRYGG 2 cut(s) 413, 537
BtgZI GCGATG 1 cut(s) 561
BtsCI GGATG 4 cut(s) 217, 355, 483, 934
BtsIMutI CAGTG 3 cut(s) 684, 1026, 1048
BveI ACCTGC 1 cut(s) 726
Cac8I GCNNGC 1 cut(s) 544
CaiI CAGNNNCTG 1 cut(s) 641
Cfr13I GGNCC 3 cut(s) 176, 448, 976
ClaI ATCGAT 1 cut(s) 576
CseI GACGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 633, 689
CviQI GTAC 2 cut(s) 633, 689
DdeI CTNAG 4 cut(s) 192, 282, 293, 1017
DpnI GATC 4 cut(s) 354, 572, 696, 850
DpnII GATC 4 cut(s) 352, 570, 694, 848
DraI TTTAAA 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 1028
EarI CTCTTC 1 cut(s) 1028
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 413, 537
Eco24I GRGCYC 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 1083
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 448
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 2 cut(s) 88, 368
Eco91I GGTNACC 1 cut(s) 559
EcoICRI GAGCTC 1 cut(s) 196
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 448
EcoO65I GGTNACC 1 cut(s) 559
EcoRV GATATC 1 cut(s) 160
EcoT14I CCWWGG 2 cut(s) 413, 537
EcoT22I ATGCAT 1 cut(s) 667
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 2 cut(s) 413, 537
FaqI GGGAC 1 cut(s) 109
FbaI TGATCA 1 cut(s) 570
FblI GTMKAC 2 cut(s) 151, 240
Fnu4HI GCNGC 1 cut(s) 950
FokI GGATG 4 cut(s) 204, 342, 490, 941
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 950
FspBI CTAG 3 cut(s) 146, 543, 852
GluI GCNGC 1 cut(s) 950
GsaI CCCAGC 1 cut(s) 340
GsuI CTGGAG 1 cut(s) 768
HaeIII GGCC 2 cut(s) 177, 977
HgaI GACGC 1 cut(s) 226
HinfI GANTC 3 cut(s) 184, 608, 935
HphI GGTGA 3 cut(s) 553, 764, 901
Hpy166II GTNNAC 3 cut(s) 152, 241, 265
Hpy188I TCNGA 3 cut(s) 193, 348, 986
Hpy188III TCNNGA 2 cut(s) 91, 852
Hpy8I GTNNAC 3 cut(s) 152, 241, 265
HpyAV CCTTC 5 cut(s) 305, 343, 353, 385, 916
HpyCH4III ACNGT 3 cut(s) 643, 688, 787
HpyCH4V TGCA 8 cut(s) 137, 206, 265, 585, 665, 684, 721, 808
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 548
HpyF3I CTNAG 4 cut(s) 192, 282, 293, 1017
Ksp22I TGATCA 1 cut(s) 570
Kzo9I GATC 4 cut(s) 352, 570, 694, 848
LguI GCTCTTC 1 cut(s) 1028
LmnI GCTCC 1 cut(s) 345
Lsp1109I GCAGC 1 cut(s) 961
LweI GCATC 5 cut(s) 319, 523, 538, 652, 1021
MaeI CTAG 3 cut(s) 146, 543, 852
MaeIII GTNAC 3 cut(s) 559, 752, 1043
MalI GATC 4 cut(s) 354, 572, 696, 850
MboI GATC 4 cut(s) 352, 570, 694, 848
MboII GAAGA 4 cut(s) 94, 836, 949, 1015
MfeI CAATTG 1 cut(s) 939
MhlI GDGCHC 3 cut(s) 198, 267, 431
MluCI AATT 4 cut(s) 138, 418, 861, 939
MlyI GAGTC 2 cut(s) 178, 617
MmeI TCCRAC 3 cut(s) 84, 245, 604
Mph1103I ATGCAT 1 cut(s) 667
MseI TTAA 6 cut(s) 21, 30, 362, 380, 843, 1073
MslI CAYNNNNRTG 3 cut(s) 566, 902, 968
MspA1I CMGCKG 1 cut(s) 952
MspCI CTTAAG 2 cut(s) 361, 842
MunI CAATTG 1 cut(s) 939
Mva1269I GAATGC 3 cut(s) 55, 665, 686
MwoI GCNNNNNNNGC 2 cut(s) 243, 548
NcoI CCATGG 2 cut(s) 413, 537
NdeII GATC 4 cut(s) 352, 570, 694, 848
NheI GCTAGC 1 cut(s) 542
NlaIV GGNNCC 5 cut(s) 95, 178, 437, 450, 500
NmuCI GTSAC 3 cut(s) 559, 752, 1043
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 3 cut(s) 707, 760, 967
OliI CACNNNNGTG 1 cut(s) 566
PciI ACATGT 2 cut(s) 703, 756
PciSI GCTCTTC 1 cut(s) 1028
PctI GAATGC 3 cut(s) 55, 665, 686
PfeI GAWTC 1 cut(s) 935
PflMI CCANNNNNTGG 1 cut(s) 414
PkrI GCNGC 1 cut(s) 951
PleI GAGTC 2 cut(s) 178, 616
PpsI GAGTC 2 cut(s) 178, 616
PpuMI RGGWCCY 1 cut(s) 448
PscI ACATGT 2 cut(s) 703, 756
Psp124BI GAGCTC 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 448
PspEI GGTNACC 1 cut(s) 559
PspFI CCCAGC 1 cut(s) 336
PspN4I GGNNCC 5 cut(s) 95, 178, 437, 450, 500
PspPI GGNCC 3 cut(s) 176, 448, 976
PspPPI RGGWCCY 1 cut(s) 448
PstNI CAGNNNCTG 1 cut(s) 641
PvuII CAGCTG 1 cut(s) 952
RsaI GTAC 2 cut(s) 634, 690
RsaNI GTAC 2 cut(s) 633, 689
RseI CAYNNNNRTG 3 cut(s) 566, 902, 968
SacI GAGCTC 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 1028
SaqAI TTAA 6 cut(s) 21, 30, 362, 380, 843, 1073
SatI GCNGC 1 cut(s) 950
Sau3AI GATC 4 cut(s) 352, 570, 694, 848
Sau96I GGNCC 3 cut(s) 176, 448, 976
SchI GAGTC 2 cut(s) 178, 617
SduI GDGCHC 3 cut(s) 198, 267, 431
SfaNI GCATC 5 cut(s) 319, 523, 538, 652, 1021
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 3 cut(s) 566, 902, 968
SmlI CTYRAG 5 cut(s) 78, 361, 424, 794, 842
SmoI CTYRAG 5 cut(s) 78, 361, 424, 794, 842
Sse9I AATT 4 cut(s) 138, 418, 861, 939
SsiI CCGC 2 cut(s) 244, 384
SspI AATATT 1 cut(s) 258
SspMI CTAG 3 cut(s) 146, 543, 852
SstI GAGCTC 1 cut(s) 198
StyI CCWWGG 2 cut(s) 413, 537
TaaI ACNGT 3 cut(s) 643, 688, 787
TaqI TCGA 4 cut(s) 393, 576, 618, 960
TasI AATT 4 cut(s) 138, 418, 861, 939
TatI WGTACW 1 cut(s) 688
TfiI GAWTC 1 cut(s) 935
Tru1I TTAA 6 cut(s) 21, 30, 362, 380, 843, 1073
Tru9I TTAA 6 cut(s) 21, 30, 362, 380, 843, 1073
TscAI CASTG 3 cut(s) 691, 1033, 1048
TseFI GTSAC 3 cut(s) 559, 752, 1043
TseI GCWGC 1 cut(s) 949
Tsp45I GTSAC 3 cut(s) 559, 752, 1043
TspDTI ATGAA 3 cut(s) 62, 100, 837
TspRI CASTG 3 cut(s) 691, 1033, 1048
Van91I CCANNNNNTGG 1 cut(s) 414
Vha464I CTTAAG 2 cut(s) 361, 842
VneI GTGCAC 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 448
XagI CCTNNNNNAGG 1 cut(s) 347
XbaI TCTAGA 1 cut(s) 851
XceI RCATGY 3 cut(s) 707, 760, 967
XmiI GTMKAC 2 cut(s) 151, 240
XspI CTAG 3 cut(s) 146, 543, 852
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.