FvH4_6g26800
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
20495252 .. 20496848
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26800.t1

Sequence Viewer

Length: 1164 bp
ATGTTTTCACAAGTATATAAAGGAATCAAAGACAGTGATAAGCCCAGTCTAATTAAGCAAGCACTCATGAGTAGTTTGGCTAATAATGGAGTGGCAAGTGCTACTGCTAGTAGTACTGATGAGCTTATTGTTCAATCTCAACTTCATGTGCGGAATCACATATTGCAGCTCATGAACTCCATGGTACTAAACTGTGCAATTCAGTTAGGCATCCCAGATATCATTCACAACCATGCTCAACCCATAACCCTTTCCGACCTTACCTCAGCACTCAATGTCCACCCTTCGAAATCTCGCTTCCTCTACCGCCTCATGTGCATTTTAGTCCAACAAGGATTTTTCACCAAACACAACGACGTTCATCATGGGATAGTTTATTCCCTAACACCATCTTCCAAGCTTCTCCTCAAGGACGGGCTAATGACAACGTTCTTGCTTCTCCTGCTCGACCCTCTGTTGACTTCCCCTTGGCACTTACTTGGCACATGGTTCCAGAACTGCGCTTCTACCCCATTCGAGATGGCGCATGGCATGTCGTTTTTCGATTTGGTGGCTCATGAACCAGTGTTTGGTAACATGTTCAATGAAGCCATGGTTGCTGACTCGAAGCTTGTTTCAAGGGCAGTGGTTAAAGAGTGTCAAGGAGTGTTTGAGGGTTTGAAGTCTCTTGTTGATGTAGGAGGTGGTAAGGGAACCATGGCATCTGCCATTGCCGATGCATTTCCACAAATAAAATGCACTGTATTGGATCTACCTCATGTCATCGAAAACTTGAAAGGGAGCAACAACTTGGACTTCATTGGAGGAAACATGTTTGAGCAAATACCTCCAGCAAATGCAATTCTACTCAAGTGGATTCTGCATGACTGGAATGATGAAGAGAGCGTGGAGATACTGAAAAGGTGTAGAGACGCAATCCCGAGCAAAAGCGATGGAGGGAAGGTCATCATCATAGAAATGGTCGTGACTGTAGATGATGACAAGAAGATGAATAACAAGTCGACTGAAACACAATTGTTCTGGGATATGTTGATGATGGTCTGTCTTACCGGCAGAGAACGCACTGAAAAGGATTGGGAGAAGTTGTTTTTGGCTGCAGGATTCAGTCACTACAAGATTACTCATACACTGGGTATTAGGTCTTTCATCGAAGTTTACCCCTAA

Protein Analysis

388

Amino Acids

43.1

Weight (kDa)

6.09

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 53 - 138 8e-19 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 157 - 369 1.2e-57 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 569
AccI GTMKAC 1 cut(s) 1001
AciI CCGC 2 cut(s) 151, 307
AclI AACGTT 1 cut(s) 428
AclWI GGATC 1 cut(s) 756
AfaI GTAC 2 cut(s) 115, 186
AfiI CCNNNNNNNGG 1 cut(s) 569
AflIII ACRYGT 2 cut(s) 576, 810
AgsI TTSAA 5 cut(s) 134, 583, 618, 661, 775
AjuI GAANNNNNNNTTGG 4 cut(s) 552, 584, 1073, 1105
AluBI AGCT 4 cut(s) 124, 169, 400, 610
AluI AGCT 4 cut(s) 124, 169, 400, 610
Alw26I GTCTC 2 cut(s) 669, 903
AlwI GGATC 1 cut(s) 756
Ama87I CYCGRG 1 cut(s) 919
ApeKI GCWGC 2 cut(s) 166, 1094
AspLEI GCGC 2 cut(s) 503, 526
AsuHPI GGTGA 1 cut(s) 334
AsuII TTCGAA 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 919
BbvCI CCTCAGC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 178, 1081
BccI CCATC 4 cut(s) 397, 514, 926, 1030
BcoDI GTCTC 2 cut(s) 669, 903
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 2 cut(s) 969, 1095
BisI GCNGC 2 cut(s) 167, 1095
BlsI GCNGC 2 cut(s) 168, 1096
BmcAI AGTACT 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 919
BmiI GGNNCC 2 cut(s) 491, 694
BmrI ACTGGG 2 cut(s) 39, 1139
BmsI GCATC 3 cut(s) 219, 706, 710
BmuI ACTGGG 2 cut(s) 39, 1139
BpmI CTGGAG 1 cut(s) 813
Bpu10I CCTNAGC 1 cut(s) 265
Bpu14I TTCGAA 1 cut(s) 287
BpuEI CTTGAG 2 cut(s) 392, 833
BsaJI CCNNGG 4 cut(s) 180, 467, 591, 696
BsaXI ACNNNNNCTCC 4 cut(s) 927, 957, 1070, 1100
Bsc4I CCNNNNNNNGG 1 cut(s) 569
Bse118I RCCGGY 1 cut(s) 1049
Bse1I ACTGG 4 cut(s) 45, 563, 872, 1134
Bse3DI GCAATG 1 cut(s) 708
BseDI CCNNGG 4 cut(s) 180, 467, 591, 696
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 569
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 4 cut(s) 45, 563, 872, 1134
BseRI GAGGAG 1 cut(s) 395
BseXI GCAGC 2 cut(s) 178, 1081
BsiHKCI CYCGRG 1 cut(s) 919
BsiSI CCGG 1 cut(s) 1050
BslI CCNNNNNNNGG 1 cut(s) 569
BsmAI GTCTC 2 cut(s) 669, 903
BsmBI CGTCTC 1 cut(s) 903
BsoBI CYCGRG 1 cut(s) 919
Bsp119I TTCGAA 1 cut(s) 287
Bsp143I GATC 1 cut(s) 748
Bsp19I CCATGG 3 cut(s) 180, 591, 696
BspACI CCGC 2 cut(s) 151, 307
BspCNI CTCAG 1 cut(s) 278
BspHI TCATGA 3 cut(s) 66, 171, 556
BspLI GGNNCC 2 cut(s) 491, 694
BspMAI CTGCAG 1 cut(s) 1099
BspPI GGATC 1 cut(s) 756
BspT104I TTCGAA 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 708
BsrFI RCCGGY 1 cut(s) 1049
BsrI ACTGG 4 cut(s) 45, 563, 872, 1134
BssAI RCCGGY 1 cut(s) 1049
BssECI CCNNGG 4 cut(s) 180, 467, 591, 696
BssMI GATC 1 cut(s) 748
BssT1I CCWWGG 4 cut(s) 180, 467, 591, 696
Bst4CI ACNGT 4 cut(s) 35, 194, 742, 970
Bst6I CTCTTC 1 cut(s) 873
BstBI TTCGAA 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 265
BstDSI CCRYGG 3 cut(s) 180, 591, 696
BstF5I GGATG 1 cut(s) 210
BstHHI GCGC 2 cut(s) 503, 526
BstKTI GATC 1 cut(s) 751
BstMAI GTCTC 2 cut(s) 669, 903
BstMBI GATC 1 cut(s) 748
BstMWI GCNNNNNNNGC 4 cut(s) 315, 442, 596, 1059
BstNSI RCATGY 3 cut(s) 535, 580, 814
BstSFI CTRYAG 2 cut(s) 969, 1095
BstV1I GCAGC 2 cut(s) 178, 1081
BstX2I RGATCY 1 cut(s) 748
BstYI RGATCY 1 cut(s) 748
BtgI CCRYGG 3 cut(s) 180, 591, 696
BtgZI GCGATG 1 cut(s) 945
BtsCI GGATG 1 cut(s) 210
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 6 cut(s) 40, 570, 630, 738, 1062, 1127
Cac8I GCNNGC 1 cut(s) 60
CciI TCATGA 3 cut(s) 66, 171, 556
CfoI GCGC 2 cut(s) 503, 526
Cfr10I RCCGGY 1 cut(s) 1049
CseI GACGC 1 cut(s) 920
Csp6I GTAC 2 cut(s) 114, 185
CspCI CAANNNNNGTGG 2 cut(s) 606, 641
CviQI GTAC 2 cut(s) 114, 185
DdeI CTNAG 1 cut(s) 265
DpnI GATC 1 cut(s) 750
DpnII GATC 1 cut(s) 748
Eam1104I CTCTTC 1 cut(s) 873
EarI CTCTTC 1 cut(s) 873
Eco130I CCWWGG 4 cut(s) 180, 467, 591, 696
Eco32I GATATC 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 919
EcoRV GATATC 1 cut(s) 220
EcoT14I CCWWGG 4 cut(s) 180, 467, 591, 696
EcoT22I ATGCAT 1 cut(s) 721
ErhI CCWWGG 4 cut(s) 180, 467, 591, 696
Esp3I CGTCTC 1 cut(s) 903
FblI GTMKAC 1 cut(s) 1001
Fnu4HI GCNGC 2 cut(s) 167, 1095
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 167, 1095
FspBI CTAG 1 cut(s) 108
GlaI GCGC 2 cut(s) 502, 525
GluI GCNGC 2 cut(s) 167, 1095
GsuI CTGGAG 1 cut(s) 813
HapII CCGG 1 cut(s) 1050
HgaI GACGC 1 cut(s) 920
HhaI GCGC 2 cut(s) 503, 526
Hin6I GCGC 2 cut(s) 501, 524
HinP1I GCGC 2 cut(s) 501, 524
HincII GTYRAC 2 cut(s) 459, 1002
HindII GTYRAC 2 cut(s) 459, 1002
HindIII AAGCTT 2 cut(s) 398, 608
HinfI GANTC 5 cut(s) 24, 154, 602, 856, 1101
HpaII CCGG 1 cut(s) 1050
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 4 cut(s) 280, 459, 1002, 1156
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 7 cut(s) 67, 172, 493, 517, 557, 919, 964
Hpy8I GTNNAC 4 cut(s) 280, 459, 1002, 1156
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 2 cut(s) 294, 934
HpyCH4III ACNGT 4 cut(s) 35, 194, 742, 970
HpyCH4IV ACGT 2 cut(s) 357, 428
HpyCH4V TGCA 8 cut(s) 166, 197, 318, 719, 738, 839, 862, 1097
HpyF10VI GCNNNNNNNGC 4 cut(s) 315, 442, 596, 1059
HpyF3I CTNAG 1 cut(s) 265
HpySE526I ACGT 2 cut(s) 357, 428
HspAI GCGC 2 cut(s) 501, 524
Kzo9I GATC 1 cut(s) 748
LmnI GCTCC 1 cut(s) 780
Lsp1109I GCAGC 2 cut(s) 178, 1081
LweI GCATC 3 cut(s) 219, 706, 710
MaeI CTAG 1 cut(s) 108
MaeII ACGT 2 cut(s) 357, 428
MaeIII GTNAC 3 cut(s) 572, 964, 1106
MalI GATC 1 cut(s) 750
MboI GATC 1 cut(s) 748
MboII GAAGA 3 cut(s) 384, 890, 997
MfeI CAATTG 1 cut(s) 1013
MflI RGATCY 1 cut(s) 748
MluCI AATT 4 cut(s) 51, 198, 840, 1013
MlyI GAGTC 1 cut(s) 596
MmeI TCCRAC 2 cut(s) 279, 352
Mph1103I ATGCAT 1 cut(s) 721
MseI TTAA 2 cut(s) 54, 630
MslI CAYNNNNRTG 2 cut(s) 231, 956
MspI CCGG 1 cut(s) 1050
MunI CAATTG 1 cut(s) 1013
MwoI GCNNNNNNNGC 4 cut(s) 315, 442, 596, 1059
NcoI CCATGG 3 cut(s) 180, 591, 696
NdeII GATC 1 cut(s) 748
NlaIV GGNNCC 2 cut(s) 491, 694
NmuCI GTSAC 2 cut(s) 964, 1106
NsiI ATGCAT 1 cut(s) 721
NspI RCATGY 3 cut(s) 535, 580, 814
NspV TTCGAA 1 cut(s) 287
PagI TCATGA 3 cut(s) 66, 171, 556
PciI ACATGT 2 cut(s) 576, 810
PfeI GAWTC 4 cut(s) 24, 154, 856, 1101
PflMI CCANNNNNTGG 1 cut(s) 569
PkrI GCNGC 2 cut(s) 168, 1096
PleI GAGTC 1 cut(s) 596
PpsI GAGTC 1 cut(s) 596
PscI ACATGT 2 cut(s) 576, 810
Psp1406I AACGTT 1 cut(s) 428
PspN4I GGNNCC 2 cut(s) 491, 694
PstI CTGCAG 1 cut(s) 1099
PsuI RGATCY 1 cut(s) 748
RsaI GTAC 2 cut(s) 115, 186
RsaNI GTAC 2 cut(s) 114, 185
RseI CAYNNNNRTG 2 cut(s) 231, 956
SalI GTCGAC 1 cut(s) 1000
SaqAI TTAA 2 cut(s) 54, 630
SatI GCNGC 2 cut(s) 167, 1095
Sau3AI GATC 1 cut(s) 748
ScaI AGTACT 1 cut(s) 115
SchI GAGTC 1 cut(s) 596
SfaNI GCATC 3 cut(s) 219, 706, 710
SfcI CTRYAG 2 cut(s) 969, 1095
SfuI TTCGAA 1 cut(s) 287
SmiMI CAYNNNNRTG 2 cut(s) 231, 956
SmlI CTYRAG 2 cut(s) 407, 848
SmoI CTYRAG 2 cut(s) 407, 848
Sse9I AATT 4 cut(s) 51, 198, 840, 1013
SsiI CCGC 2 cut(s) 151, 307
SspMI CTAG 1 cut(s) 108
StyI CCWWGG 4 cut(s) 180, 467, 591, 696
TaaI ACNGT 4 cut(s) 35, 194, 742, 970
TaiI ACGT 2 cut(s) 360, 431
TaqI TCGA 8 cut(s) 287, 447, 516, 543, 605, 765, 1001, 1149
TasI AATT 4 cut(s) 51, 198, 840, 1013
TatI WGTACW 1 cut(s) 113
TfiI GAWTC 4 cut(s) 24, 154, 856, 1101
Tru1I TTAA 2 cut(s) 54, 630
Tru9I TTAA 2 cut(s) 54, 630
TscAI CASTG 6 cut(s) 40, 570, 630, 745, 1069, 1134
TseFI GTSAC 2 cut(s) 964, 1106
TseI GCWGC 2 cut(s) 166, 1094
Tsp45I GTSAC 2 cut(s) 964, 1106
TspDTI ATGAA 9 cut(s) 134, 188, 350, 573, 600, 787, 891, 1004, 1135
TspRI CASTG 6 cut(s) 40, 570, 630, 745, 1069, 1134
Van91I CCANNNNNTGG 1 cut(s) 569
XceI RCATGY 3 cut(s) 535, 580, 814
XmiI GTMKAC 1 cut(s) 1001
XspI CTAG 1 cut(s) 108
ZrmI AGTACT 1 cut(s) 115
Zsp2I ATGCAT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.