Rorug02G0278100
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000692
Physical Location & Seq
Reverse (-)
29990678 .. 29991234
557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0278100.1

Sequence Viewer

Length: 426 bp
ATGTTGTGGTTACTTCCGGATGCAAGAGATGGGTTGCCGGCTCTGACTGAGAGAGTTTGTTCCGAGTCCGGGTTTCTAGACCTCCATCTTAATAGTTTTACGACTGTTAGAGTGAAGAAATTCTTGATTCCAAAGTTTAAGATTTCATCCGGGTTTGAAGCTTCGGGTGTTCTGAAGAAAATAGGGCTGGGGGATGGTTGTGATTTTATAGCGATATTTCACGAATCTGTAATAGACGTTGATGAAAATGGCACAACAGCTGCAGCTGCTACTTGTGCTCAAATATGGCTTAGCGATGGTAACTTCTCCAAACCTAAAGAGATAGAAGAATTTGTGGCTGACCACCCCTTCATGTTTCTCATAACAGAAAACAGAACCAGAACGGTGCTGTTCATGGGGCAGGTGTTCAATCCTCTTGCAGGCTGA

Protein Analysis

141

Amino Acids

15.54

Weight (kDa)

5.11

Isoelectric Point (pI)

24.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 1 - 138 3.5e-23 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 391
Acc36I ACCTGC 1 cut(s) 391
AccIII TCCGGA 1 cut(s) 16
AcsI RAATTY 2 cut(s) 119, 329
AcuI CTGAAG 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 69, 419
AgsI TTSAA 2 cut(s) 158, 409
AluBI AGCT 3 cut(s) 161, 260, 266
AluI AGCT 3 cut(s) 161, 260, 266
Alw21I GWGCWC 1 cut(s) 280
Aor13HI TCCGGA 1 cut(s) 16
ApeKI GCWGC 3 cut(s) 260, 263, 266
ApoI RAATTY 2 cut(s) 119, 329
Asp700I GAANNNNTTC 1 cut(s) 119
AsuC2I CCSGG 2 cut(s) 70, 151
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 3 cut(s) 247, 253, 275
BccI CCATC 4 cut(s) 23, 93, 188, 290
BcnI CCSGG 2 cut(s) 70, 151
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 391
BisI GCNGC 3 cut(s) 261, 264, 267
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 3 cut(s) 262, 265, 268
Bme1390I CCNGG 2 cut(s) 70, 151
BmrFI CCNGG 2 cut(s) 70, 151
BmsI GCATC 1 cut(s) 10
Bpu1102I GCTNAGC 1 cut(s) 290
BpuMI CCSGG 2 cut(s) 70, 151
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 419
Bse118I RCCGGY 1 cut(s) 37
BseAI TCCGGA 1 cut(s) 16
BseGI GGATG 3 cut(s) 25, 146, 199
BseLI CCNNNNNNNGG 2 cut(s) 69, 419
BseMII CTCAG 1 cut(s) 39
BseXI GCAGC 3 cut(s) 247, 253, 275
BseYI CCCAGC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 4 cut(s) 17, 38, 69, 150
BslI CCNNNNNNNGG 2 cut(s) 69, 419
Bsp1286I GDGCHC 1 cut(s) 280
Bsp13I TCCGGA 1 cut(s) 16
Bsp1720I GCTNAGC 1 cut(s) 290
BspCNI CTCAG 1 cut(s) 40
BspEI TCCGGA 1 cut(s) 16
BspMAI CTGCAG 1 cut(s) 265
BspMI ACCTGC 1 cut(s) 391
BsrFI RCCGGY 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 106, 385
BstC8I GCNNGC 2 cut(s) 39, 421
BstDEI CTNAG 2 cut(s) 48, 290
BstENI CCTNNNNNAGG 1 cut(s) 417
BstF5I GGATG 3 cut(s) 25, 146, 199
BstMWI GCNNNNNNNGC 2 cut(s) 266, 275
BstSCI CCNGG 2 cut(s) 68, 149
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 3 cut(s) 247, 253, 275
BtgZI GCGATG 1 cut(s) 309
BtsCI GGATG 3 cut(s) 25, 146, 199
BveI ACCTGC 1 cut(s) 391
Cac8I GCNNGC 2 cut(s) 39, 421
Cfr10I RCCGGY 1 cut(s) 37
CviAII CATG 2 cut(s) 352, 394
CviJI RGCY 8 cut(s) 41, 161, 187, 260, 266, 289, 338, 423
CviKI_1 RGCY 8 cut(s) 41, 161, 187, 260, 266, 289, 338, 423
DdeI CTNAG 2 cut(s) 48, 290
Eco57I CTGAAG 1 cut(s) 194
EcoNI CCTNNNNNAGG 1 cut(s) 417
FaeI CATG 2 cut(s) 355, 397
FaiI YATR 5 cut(s) 209, 286, 353, 362, 395
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 2 cut(s) 351, 393
Fnu4HI GCNGC 3 cut(s) 261, 264, 267
FokI GGATG 3 cut(s) 32, 133, 206
Fsp4HI GCNGC 3 cut(s) 261, 264, 267
FspBI CTAG 1 cut(s) 77
GluI GCNGC 3 cut(s) 261, 264, 267
GsaI CCCAGC 1 cut(s) 191
HapII CCGG 4 cut(s) 17, 38, 69, 150
Hin1II CATG 2 cut(s) 355, 397
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 3 cut(s) 65, 127, 224
HpaII CCGG 4 cut(s) 17, 38, 69, 150
Hpy188I TCNGA 3 cut(s) 45, 64, 174
Hpy188III TCNNGA 4 cut(s) 17, 77, 124, 221
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 2 cut(s) 106, 385
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 23, 263, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 275
HpyF3I CTNAG 2 cut(s) 48, 290
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 2 cut(s) 355, 397
Kpn2I TCCGGA 1 cut(s) 16
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
LpnPI CCDG 8 cut(s) 30, 51, 82, 163, 173, 386, 391, 405
Lsp1109I GCAGC 3 cut(s) 247, 253, 275
LweI GCATC 1 cut(s) 10
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 2 cut(s) 9, 299
MboII GAAGA 3 cut(s) 127, 187, 338
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 2 cut(s) 119, 329
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 2 cut(s) 92, 423
MroI TCCGGA 1 cut(s) 16
MroNI GCCGGC 1 cut(s) 37
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 2 cut(s) 90, 138
MspA1I CMGCKG 2 cut(s) 260, 266
MspI CCGG 4 cut(s) 17, 38, 69, 150
MspR9I CCNGG 2 cut(s) 70, 151
MwoI GCNNNNNNNGC 2 cut(s) 266, 275
NaeI GCCGGC 1 cut(s) 39
NciI CCSGG 2 cut(s) 70, 151
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 2 cut(s) 355, 397
PaqCI CACCTGC 1 cut(s) 391
PdiI GCCGGC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 2 cut(s) 127, 224
PkrI GCNGC 3 cut(s) 262, 265, 268
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PspFI CCCAGC 1 cut(s) 187
PstI CTGCAG 1 cut(s) 265
PvuII CAGCTG 2 cut(s) 260, 266
SaqAI TTAA 2 cut(s) 90, 138
SatI GCNGC 3 cut(s) 261, 264, 267
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 70, 151
SduI GDGCHC 1 cut(s) 280
SetI ASST 7 cut(s) 84, 163, 240, 262, 268, 316, 405
SfaNI GCATC 1 cut(s) 10
SfcI CTRYAG 1 cut(s) 261
Sse9I AATT 2 cut(s) 119, 329
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 68, 149
TaaI ACNGT 2 cut(s) 106, 385
TaiI ACGT 1 cut(s) 240
TasI AATT 2 cut(s) 119, 329
TfiI GAWTC 2 cut(s) 127, 224
Tru1I TTAA 2 cut(s) 90, 138
Tru9I TTAA 2 cut(s) 90, 138
TseI GCWGC 3 cut(s) 260, 263, 266
TspDTI ATGAA 4 cut(s) 135, 258, 340, 382
XagI CCTNNNNNAGG 1 cut(s) 417
XapI RAATTY 2 cut(s) 119, 329
XbaI TCTAGA 1 cut(s) 76
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.