RLG00000006507
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
7856053 .. 7856610
558 bp
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UTR
Exon/CDS
Intron
RLM00000006507

Sequence Viewer

Length: 558 bp
ATGGATTTAGCCACTAATAATAGTAGTTCTCGTGAGCTTCTTCAAGCTCAAGTCCATGTTTGGAATCACATGTTGAAGTTCATAAACTCCATGGCACTAAAATGTGCAATTCAGTTAGGCATCCCAGATATCATTCACAACCATGGCCAACCCATTACCCTCTCCAACCTTATTTCTAGACTCAATGTCCACCCTTCTAATTCTCGCTTCATCTATTGCCTCACGCGCATTTTAGTCCAATGTGGATTTTTTGTCAAACAGAACGACGTTCATCAAGAAGTAGTCTATTCCCTAACACCATCTTCCGAGCTTCTCCTCAATGACCAGCCTTTGAAAACGACACCGTTCTTGCTTCTCCAACTCGACCCAATGTTGCTTGCCCCGTGGCATTTGTTGGGCTCGTGGTTCCGAAACCACGGATCCACCCCATTTGAGATGACATATGATATGTCGTTCTTCGATTTGGGGGCTCATGAACCAATTTTTGGTAACATGTTTGACGAAGCAATGGTTGCCGACTCGGAGCTTGTTTCGAGGGTGGTGATTAAAGAGTGTTAA

Protein Analysis

186

Amino Acids

21.07

Weight (kDa)

5.78

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 21 - 107 9.2e-19 O-methyltransferase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 485
AccII CGCG 1 cut(s) 226
AclWI GGATC 2 cut(s) 414, 427
AcoI YGGCCR 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 485
AflIII ACRYGT 2 cut(s) 69, 492
AgsI TTSAA 3 cut(s) 44, 76, 334
AhdI GACNNNNNGTC 1 cut(s) 185
AjuI GAANNNNNNNTTGG 2 cut(s) 468, 500
AluBI AGCT 4 cut(s) 37, 47, 310, 526
AluI AGCT 4 cut(s) 37, 47, 310, 526
AlwI GGATC 2 cut(s) 414, 427
AoxI GGCC 1 cut(s) 145
AspLEI GCGC 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 553
BalI TGGCCA 1 cut(s) 147
BamHI GGATCC 1 cut(s) 419
BanII GRGCYC 2 cut(s) 401, 472
BauI CACGAG 2 cut(s) 30, 400
BccI CCATC 1 cut(s) 307
BfaI CTAG 1 cut(s) 177
BmeRI GACNNNNNGTC 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 407, 421
BmsI GCATC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 33
BsaJI CCNNGG 4 cut(s) 90, 142, 383, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 513
BseDI CCNNGG 4 cut(s) 90, 142, 383, 415
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMI GCAATG 1 cut(s) 513
BseRI GAGGAG 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 226
BshFI GGCC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 485
BsnI GGCC 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 401, 472
Bsp143I GATC 1 cut(s) 419
Bsp19I CCATGG 2 cut(s) 90, 142
BspANI GGCC 1 cut(s) 147
BspFNI CGCG 1 cut(s) 226
BspHI TCATGA 1 cut(s) 472
BspLI GGNNCC 2 cut(s) 407, 421
BspPI GGATC 2 cut(s) 414, 427
BsrDI GCAATG 1 cut(s) 513
BssECI CCNNGG 4 cut(s) 90, 142, 383, 415
BssMI GATC 1 cut(s) 419
BssSI CACGAG 2 cut(s) 30, 400
BssT1I CCWWGG 2 cut(s) 90, 142
Bst2BI CACGAG 2 cut(s) 30, 400
Bst4CI ACNGT 1 cut(s) 345
BstAPI GCANNNNNTGC 1 cut(s) 512
BstC8I GCNNGC 1 cut(s) 378
BstDSI CCRYGG 4 cut(s) 90, 142, 383, 415
BstF5I GGATG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 226
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 1 cut(s) 422
BstMBI GATC 1 cut(s) 419
BstMWI GCNNNNNNNGC 2 cut(s) 225, 512
BstNSI RCATGY 2 cut(s) 73, 496
BstUI CGCG 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 419
BstYI RGATCY 1 cut(s) 419
BsuRI GGCC 1 cut(s) 147
BtgI CCRYGG 4 cut(s) 90, 142, 383, 415
BtsCI GGATG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 378
CciI TCATGA 1 cut(s) 472
CfoI GCGC 1 cut(s) 228
CspCI CAANNNNNGTGG 2 cut(s) 412, 447
CviAII CATG 6 cut(s) 56, 70, 91, 143, 473, 493
CviJI RGCY 9 cut(s) 11, 37, 47, 147, 310, 328, 399, 470, 526
CviKI_1 RGCY 9 cut(s) 11, 37, 47, 147, 310, 328, 399, 470, 526
DpnI GATC 1 cut(s) 421
DpnII GATC 1 cut(s) 419
DriI GACNNNNNGTC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 145
Eam1105I GACNNNNNGTC 1 cut(s) 185
Eco130I CCWWGG 2 cut(s) 90, 142
Eco24I GRGCYC 2 cut(s) 401, 472
Eco32I GATATC 1 cut(s) 130
EcoRV GATATC 1 cut(s) 130
EcoT14I CCWWGG 2 cut(s) 90, 142
EcoT38I GRGCYC 2 cut(s) 401, 472
ErhI CCWWGG 2 cut(s) 90, 142
FaeI CATG 6 cut(s) 59, 73, 94, 146, 476, 496
FatI CATG 6 cut(s) 55, 69, 90, 142, 472, 492
FauNDI CATATG 1 cut(s) 442
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 2 cut(s) 401, 472
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 227
HaeIII GGCC 1 cut(s) 147
HhaI GCGC 1 cut(s) 228
Hin1II CATG 6 cut(s) 59, 73, 94, 146, 476, 496
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 3 cut(s) 64, 180, 518
HphI GGTGA 1 cut(s) 553
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 3 cut(s) 307, 410, 523
Hpy188III TCNNGA 4 cut(s) 32, 177, 275, 473
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 512
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 6 cut(s) 59, 73, 94, 146, 476, 496
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 1 cut(s) 419
LmnI GCTCC 1 cut(s) 523
LpnPI CCDG 2 cut(s) 138, 338
LweI GCATC 1 cut(s) 129
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 488
MalI GATC 1 cut(s) 421
MboI GATC 1 cut(s) 419
MboII GAAGA 3 cut(s) 32, 294, 448
MflI RGATCY 1 cut(s) 419
MhlI GDGCHC 2 cut(s) 401, 472
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 3 cut(s) 108, 199, 480
MluNI TGGCCA 1 cut(s) 147
MlyI GAGTC 2 cut(s) 174, 512
MmeI TCCRAC 2 cut(s) 189, 382
MnlI CCTC 4 cut(s) 170, 230, 326, 528
Mox20I TGGCCA 1 cut(s) 147
MscI TGGCCA 1 cut(s) 147
MseI TTAA 2 cut(s) 546, 556
MslI CAYNNNNRTG 2 cut(s) 100, 141
Msp20I TGGCCA 1 cut(s) 147
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 2 cut(s) 225, 512
NcoI CCATGG 2 cut(s) 90, 142
NdeI CATATG 1 cut(s) 442
NdeII GATC 1 cut(s) 419
NlaIII CATG 6 cut(s) 59, 73, 94, 146, 476, 496
NlaIV GGNNCC 2 cut(s) 407, 421
NspI RCATGY 2 cut(s) 73, 496
PagI TCATGA 1 cut(s) 472
PciI ACATGT 2 cut(s) 69, 492
PfeI GAWTC 1 cut(s) 64
PflMI CCANNNNNTGG 1 cut(s) 485
PleI GAGTC 2 cut(s) 174, 512
PpsI GAGTC 2 cut(s) 174, 512
PscI ACATGT 2 cut(s) 69, 492
PspN4I GGNNCC 2 cut(s) 407, 421
PsuI RGATCY 1 cut(s) 419
RseI CAYNNNNRTG 2 cut(s) 100, 141
SaqAI TTAA 2 cut(s) 546, 556
Sau3AI GATC 1 cut(s) 419
SchI GAGTC 2 cut(s) 174, 512
SduI GDGCHC 2 cut(s) 401, 472
SetI ASST 6 cut(s) 39, 49, 171, 270, 312, 528
SfaNI GCATC 1 cut(s) 129
SmiMI CAYNNNNRTG 2 cut(s) 100, 141
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 3 cut(s) 108, 199, 480
SspMI CTAG 1 cut(s) 177
StyI CCWWGG 2 cut(s) 90, 142
TaaI ACNGT 1 cut(s) 345
TaiI ACGT 1 cut(s) 270
TaqI TCGA 3 cut(s) 363, 459, 533
TasI AATT 3 cut(s) 108, 199, 480
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 546, 556
Tru9I TTAA 2 cut(s) 546, 556
TspDTI ATGAA 4 cut(s) 70, 199, 260, 489
TspGWI ACGGA 1 cut(s) 432
Van91I CCANNNNNTGG 1 cut(s) 485
XbaI TCTAGA 1 cut(s) 176
XceI RCATGY 2 cut(s) 73, 496
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.