Prupe.3G120200_v2.0.a1
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000692
Physical Location & Seq
Forward (+)
10572635 .. 10573286
652 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G120200.1

Sequence Viewer

Length: 480 bp
ATGGGCGGTGGGACGGGAACTGTGGCCAAGTCCATTGCTGATGCCTTCCCTCATATGAAATGCACAGTACTTGATCTCCCTCATGTAGTTGCTGACCTAAAAGGGAGTAAGAACTTGGAATATGTTGCAGGGAACATGTTTGAGGCTGTTCCTGCGGCCGATGCAATTTTTTTGAAGTGGATATTGCATGACTGGAGTGATGAAGAATGCGTGAAAATACTCGAGCGATGTAAAGAGGCAATTACAAGAGAGGGCAAGAAAAGCAAGGTGATTATTGTAGATATGACGGTGGAGAACAAGAATACAGATAAAGAATCTGGGGAAACACAACTTTTCTTTGATATGCTGATGATGGTTATGGCTACAGGAAAAGAAAGGAATGATAAAGAATGGGCTAAGCTCTTTTCTGACGCAGGTTTCAGCCACTATAAGATTACTCCCTGTTTGGGTTTAAGGTCTCTCATTGAGGTTTATCCTTGA

Protein Analysis

160

Amino Acids

17.75

Weight (kDa)

5.59

Isoelectric Point (pI)

25.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 404
AciI CCGC 2 cut(s) 6, 155
AcoI YGGCCR 2 cut(s) 24, 156
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 446
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 1 cut(s) 400
AluI AGCT 1 cut(s) 400
Alw26I GTCTC 1 cut(s) 462
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 2 cut(s) 24, 156
AsuHPI GGTGA 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 221
BalI TGGCCA 1 cut(s) 26
BccI CCATC 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 462
BfmI CTRYAG 1 cut(s) 363
BfuAI ACCTGC 1 cut(s) 404
BisI GCNGC 1 cut(s) 156
BlpI GCTNAGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 157
BmcAI AGTACT 1 cut(s) 69
BmeT110I CYCGRG 1 cut(s) 221
BmsI GCATC 2 cut(s) 31, 151
BpmI CTGGAG 1 cut(s) 214
Bpu1102I GCTNAGC 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 462
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 197
BseX3I CGGCCG 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 26, 158
BsiEI CGRYCG 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 1 cut(s) 462
BsmFI GGGAC 1 cut(s) 25
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 2 cut(s) 26, 158
Bso31I GGTCTC 1 cut(s) 462
BsoBI CYCGRG 1 cut(s) 221
Bsp143I GATC 1 cut(s) 73
Bsp1720I GCTNAGC 1 cut(s) 396
BspACI CCGC 2 cut(s) 6, 155
BspANI GGCC 2 cut(s) 26, 158
BspMI ACCTGC 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 462
BsrDI GCAATG 1 cut(s) 33
BsrI ACTGG 1 cut(s) 197
BssMI GATC 1 cut(s) 73
Bst4CI ACNGT 3 cut(s) 22, 67, 289
BstDEI CTNAG 1 cut(s) 396
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 462
BstMBI GATC 1 cut(s) 73
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 3 cut(s) 152, 161, 261
BstNSI RCATGY 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 363
BstZI CGGCCG 1 cut(s) 156
BsuRI GGCC 2 cut(s) 26, 158
BtgZI GCGATG 1 cut(s) 241
BveI ACCTGC 1 cut(s) 404
CseI GACGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 68
CviAII CATG 3 cut(s) 83, 136, 188
CviJI RGCY 7 cut(s) 26, 146, 158, 362, 395, 400, 423
CviKI_1 RGCY 7 cut(s) 26, 146, 158, 362, 395, 400, 423
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 1 cut(s) 396
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 2 cut(s) 24, 156
EagI CGGCCG 1 cut(s) 156
EclXI CGGCCG 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 462
Eco52I CGGCCG 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 221
FaeI CATG 3 cut(s) 86, 139, 191
FaqI GGGAC 1 cut(s) 25
FatI CATG 3 cut(s) 82, 135, 187
FauNDI CATATG 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 214
HaeIII GGCC 2 cut(s) 26, 158
HgaI GACGC 1 cut(s) 419
Hin1II CATG 3 cut(s) 86, 139, 191
HinfI GANTC 1 cut(s) 314
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 409
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 3 cut(s) 22, 67, 289
HpyCH4V TGCA 4 cut(s) 63, 128, 164, 187
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 161, 261
HpyF3I CTNAG 1 cut(s) 396
Hsp92II CATG 3 cut(s) 86, 139, 191
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 7 cut(s) 114, 165, 178, 303, 351, 399, 454
LweI GCATC 2 cut(s) 31, 151
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 1 cut(s) 215
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 2 cut(s) 165, 240
MluNI TGGCCA 1 cut(s) 26
MnlI CCTC 6 cut(s) 60, 90, 136, 229, 244, 460
Mox20I TGGCCA 1 cut(s) 26
MscI TGGCCA 1 cut(s) 26
MseI TTAA 1 cut(s) 452
Msp20I TGGCCA 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 212
MwoI GCNNNNNNNGC 3 cut(s) 152, 161, 261
NdeI CATATG 1 cut(s) 54
NdeII GATC 1 cut(s) 73
NlaIII CATG 3 cut(s) 86, 139, 191
NspI RCATGY 1 cut(s) 139
PaeR7I CTCGAG 1 cut(s) 221
PciI ACATGT 1 cut(s) 135
PctI GAATGC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 1 cut(s) 157
PscI ACATGT 1 cut(s) 135
PspXI VCTCGAGB 1 cut(s) 221
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 452
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 69
SetI ASST 6 cut(s) 99, 270, 402, 418, 458, 471
SfaNI GCATC 2 cut(s) 31, 151
SfcI CTRYAG 1 cut(s) 363
Sfr274I CTCGAG 1 cut(s) 221
SlaI CTCGAG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 2 cut(s) 165, 240
SsiI CCGC 2 cut(s) 6, 155
TaaI ACNGT 3 cut(s) 22, 67, 289
TaqI TCGA 1 cut(s) 222
TasI AATT 2 cut(s) 165, 240
TatI WGTACW 1 cut(s) 67
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TspDTI ATGAA 2 cut(s) 71, 216
XceI RCATGY 1 cut(s) 139
XhoI CTCGAG 1 cut(s) 221
ZrmI AGTACT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.