Rorug02G0278000
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
29986584 .. 29990370
3787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0278000.1

Sequence Viewer

Length: 1365 bp
ATGATGGAGACAATGAGCAATTCAAGTAGGACTACGTCGTTCAGCCCGACTACATCATTCAATAGGAGCACATCATTCAATAGAAGTACATCATTCAAATCAAGAACCCCGACTGTAGAAAGCCCAACCGTCAGTCAATCTAGCTGGGTGTCGCGGGTTAGTCCATTTAGCTGGGTCTCGCGTTGGTTTCACACACTCATAGTGATTTTCACATTCATTTCGTTTCTCATTGCCGTTTATGGGGGTTATCTATATGTGATGCCAAGTCTCAACCTGACTTTTCATGGTTATGGTGTTTTGGAACCTGCTCAGTCGATAAGCAGTTGCAATATGTTTGATGGAAGTTGGGTTGTTGATGATAATTACCCATTGTACAATGCTACAGAGTGTCCCTTTGTGGAGCAGGGGTTCAATTGTTTGGCTAATGGTCGAAGAGATAAGGATTATCTGAAATATAGGTGGAAACCCAATAATTGTGATATACCAAGATTTAATGTGCAGGGTATATTGGACAAGCTTAGAGGAAAAAGAGTTGTTTTTGTGGGGGATTCTATGAGTAGAACACAGTGGGAGTCACTAATTTGCTTGCTCATGACTGGGGTGGAGGATAAGAAGAGTGTCTATGAAGTCAACGGGAATAAGATTACGAAACAGATCAGATATTTGGGTGTTCGCTTCAGTTCCTTCAATTTTACTGTCGAGTTCTTTCGATCAGTTTTCCTGGTTCAACAGGGTTGGATGCCTAGACATGCTCCAAAGAGGGTCAAGTCTATACTAAAGTTGGACAAGTTAGATGACATTAGCAATCAGTGGATTAATTCAGATATTCTGATATTCAACACGGGACAGTGGTGGGTTCCAGGAAAACTCTTTGACACGGGTTGCTATTTCCAGGTTGGAAACTCGCTAAAGCTTGGATTGTCAATTCCTACTGCATTTAGAACAGCACTGGATACTTGGGCAGCTTGGGTTGAGGAAAAGATCACCACTAACAGAACTCATGTCTTTTTTCGGACTTTTGAGCCCTCTCACTGGAGTGATCCAACTCGTAGATTTTGCAATGTGACCGATCACCCCATGTTAGACACCAGAGGTAGGGACAGAAGCATATTTTCAGACACTGTACATGAGGTGGTCAAGAATATGACAGTTCCTGTAGCCGTTCTTCATGTGACTTCCATGTCATCTTTCCGAAGTGATGCACATGTCGGTAACTGGAGCGATAAACCATCTGTTCCTGATTGTAGCCACTGGTGTCTTCCAGGATTACCTGATGTATGGAATGAAATCATCCTCTTTTACCTGTTTAATGACAAAGGGCTTCCTTTTCTAGAGGGATTCGAGCCTTGGCATTCTGGTGGATAG

Protein Analysis

454

Amino Acids

52.22

Weight (kDa)

8.76

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 108 - 160 2.2e-23 PMR5 N terminal Domain
PC-Esterase PF13839 161 - 432 1.4e-85 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1180
Acc36I ACCTGC 1 cut(s) 313
AccII CGCG 2 cut(s) 154, 181
AciI CCGC 1 cut(s) 154
AclWI GGATC 1 cut(s) 1034
AcuI CTGAAG 1 cut(s) 661
AfaI GTAC 3 cut(s) 88, 374, 1125
AfiI CCNNNNNNNGG 3 cut(s) 240, 1032, 1095
AflIII ACRYGT 1 cut(s) 1204
AgsI TTSAA 8 cut(s) 24, 61, 79, 97, 412, 688, 728, 838
AjnI CCWGG 4 cut(s) 720, 859, 891, 1261
AleI CACNNNNGTG 1 cut(s) 1035
AloI GAACNNNNNNTCC 2 cut(s) 392, 424
AluBI AGCT 5 cut(s) 144, 171, 517, 913, 965
AluI AGCT 5 cut(s) 144, 171, 517, 913, 965
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 3 cut(s) 2, 181, 272
AlwI GGATC 1 cut(s) 1034
AlwNI CAGNNNCTG 2 cut(s) 1121, 1154
ApeKI GCWGC 1 cut(s) 962
AseI ATTAAT 1 cut(s) 816
AsuHPI GGTGA 2 cut(s) 976, 1064
BanII GRGCYC 1 cut(s) 1026
BarI GAAGNNNNNNTAC 2 cut(s) 1149, 1181
BbsI GAAGAC 1 cut(s) 1250
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 974
BccI CCATC 2 cut(s) 332, 1237
BceAI ACGGC 2 cut(s) 218, 1145
BciT130I CCWGG 4 cut(s) 722, 861, 893, 1263
BciVI GTATCC 1 cut(s) 946
BcoDI GTCTC 3 cut(s) 2, 181, 272
BfaI CTAG 3 cut(s) 141, 744, 1331
BfmI CTRYAG 3 cut(s) 114, 381, 1155
BfuAI ACCTGC 1 cut(s) 313
BfuI GTATCC 1 cut(s) 946
BisI GCNGC 1 cut(s) 963
BlsI GCNGC 1 cut(s) 964
Bme1390I CCNGG 4 cut(s) 722, 861, 893, 1263
BmiI GGNNCC 2 cut(s) 303, 858
BmrFI CCNGG 4 cut(s) 722, 861, 893, 1263
BmrI ACTGGG 1 cut(s) 606
BmsI GCATC 3 cut(s) 249, 729, 1189
BmuI ACTGGG 1 cut(s) 606
BpiI GAAGAC 1 cut(s) 1250
BpmI CTGGAG 2 cut(s) 1054, 1237
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 1346
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 1032, 1095
Bse1I ACTGG 5 cut(s) 601, 954, 1037, 1220, 1256
Bse3DI GCAATG 2 cut(s) 228, 1066
BseBI CCWGG 4 cut(s) 722, 861, 893, 1263
BseDI CCNNGG 1 cut(s) 1346
BseGI GGATG 2 cut(s) 744, 1290
BseLI CCNNNNNNNGG 3 cut(s) 240, 1032, 1095
BseMI GCAATG 2 cut(s) 228, 1066
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 5 cut(s) 601, 954, 1037, 1220, 1256
BseXI GCAGC 1 cut(s) 974
BseYI CCCAGC 2 cut(s) 144, 171
BsgI GTGCAG 1 cut(s) 518
Bsh1236I CGCG 2 cut(s) 154, 181
BsiHKAI GWGCWC 1 cut(s) 71
BslFI GGGAC 3 cut(s) 375, 858, 1112
BslI CCNNNNNNNGG 3 cut(s) 240, 1032, 1095
BsmAI GTCTC 3 cut(s) 2, 181, 272
BsmFI GGGAC 3 cut(s) 375, 858, 1112
BsmI GAATGC 1 cut(s) 1351
Bso31I GGTCTC 1 cut(s) 181
Bsp1286I GDGCHC 2 cut(s) 71, 1026
Bsp1407I TGTACA 2 cut(s) 372, 1123
Bsp143I GATC 5 cut(s) 654, 710, 981, 1039, 1069
BspACI CCGC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 2 cut(s) 154, 181
BspHI TCATGA 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 303, 858
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 1 cut(s) 1034
BspTNI GGTCTC 1 cut(s) 181
BsrDI GCAATG 2 cut(s) 228, 1066
BsrGI TGTACA 2 cut(s) 372, 1123
BsrI ACTGG 5 cut(s) 601, 954, 1037, 1220, 1256
BssECI CCNNGG 1 cut(s) 1346
BssMI GATC 5 cut(s) 654, 710, 981, 1039, 1069
BssT1I CCWWGG 1 cut(s) 1346
Bst2UI CCWGG 4 cut(s) 722, 861, 893, 1263
Bst4CI ACNGT 7 cut(s) 115, 130, 567, 697, 849, 1123, 1150
Bst6I CTCTTC 2 cut(s) 427, 608
BstAUI TGTACA 2 cut(s) 372, 1123
BstC8I GCNNGC 1 cut(s) 587
BstDEI CTNAG 2 cut(s) 309, 518
BstF5I GGATG 2 cut(s) 744, 1290
BstFNI CGCG 2 cut(s) 154, 181
BstKTI GATC 5 cut(s) 657, 713, 984, 1042, 1072
BstMAI GTCTC 3 cut(s) 2, 181, 272
BstMBI GATC 5 cut(s) 654, 710, 981, 1039, 1069
BstNI CCWGG 4 cut(s) 722, 861, 893, 1263
BstNSI RCATGY 2 cut(s) 752, 1208
BstSCI CCNGG 4 cut(s) 720, 859, 891, 1261
BstSFI CTRYAG 3 cut(s) 114, 381, 1155
BstUI CGCG 2 cut(s) 154, 181
BstV1I GCAGC 1 cut(s) 974
BstV2I GAAGAC 1 cut(s) 1250
BstXI CCANNNNNNTGG 1 cut(s) 171
BsuI GTATCC 1 cut(s) 946
BtsCI GGATG 2 cut(s) 744, 1290
BtsIMutI CAGTG 7 cut(s) 572, 815, 854, 947, 1030, 1119, 1249
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 587
CaiI CAGNNNCTG 2 cut(s) 1121, 1154
CciI TCATGA 1 cut(s) 591
Csp6I GTAC 3 cut(s) 87, 373, 1124
CviAII CATG 9 cut(s) 284, 592, 749, 1001, 1078, 1127, 1169, 1180, 1205
CviQI GTAC 3 cut(s) 87, 373, 1124
DdeI CTNAG 2 cut(s) 309, 518
DpnI GATC 5 cut(s) 656, 712, 983, 1041, 1071
DpnII GATC 5 cut(s) 654, 710, 981, 1039, 1069
DrdI GACNNNNNNGTC 1 cut(s) 1180
DseDI GACNNNNNNGTC 1 cut(s) 1180
Eam1104I CTCTTC 2 cut(s) 427, 608
EarI CTCTTC 2 cut(s) 427, 608
Eco130I CCWWGG 1 cut(s) 1346
Eco24I GRGCYC 1 cut(s) 1026
Eco31I GGTCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 661
EcoRII CCWGG 4 cut(s) 720, 859, 891, 1261
EcoT14I CCWWGG 1 cut(s) 1346
EcoT38I GRGCYC 1 cut(s) 1026
ErhI CCWWGG 1 cut(s) 1346
FaeI CATG 9 cut(s) 287, 595, 752, 1004, 1081, 1130, 1172, 1183, 1208
FaqI GGGAC 3 cut(s) 375, 858, 1112
FatI CATG 9 cut(s) 283, 591, 748, 1000, 1077, 1126, 1168, 1179, 1204
FauI CCCGC 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 963
FokI GGATG 2 cut(s) 751, 1277
FriOI GRGCYC 1 cut(s) 1026
Fsp4HI GCNGC 1 cut(s) 963
FspBI CTAG 3 cut(s) 141, 744, 1331
GluI GCNGC 1 cut(s) 963
GsaI CCCAGC 2 cut(s) 148, 175
GsuI CTGGAG 2 cut(s) 1054, 1237
Hin1II CATG 9 cut(s) 287, 595, 752, 1004, 1081, 1130, 1172, 1183, 1208
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HindIII AAGCTT 2 cut(s) 515, 911
HinfI GANTC 3 cut(s) 548, 572, 1338
HphI GGTGA 2 cut(s) 976, 1064
Hpy166II GTNNAC 1 cut(s) 631
Hpy188I TCNGA 7 cut(s) 450, 659, 823, 831, 1014, 1117, 1193
Hpy188III TCNNGA 5 cut(s) 102, 592, 1138, 1238, 1331
Hpy8I GTNNAC 1 cut(s) 631
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 694
HpyCH4III ACNGT 7 cut(s) 115, 130, 567, 697, 849, 1123, 1150
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 5 cut(s) 327, 499, 935, 1059, 1202
HpyF3I CTNAG 2 cut(s) 309, 518
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 9 cut(s) 287, 595, 752, 1004, 1081, 1130, 1172, 1183, 1208
Kzo9I GATC 5 cut(s) 654, 710, 981, 1039, 1069
LmnI GCTCC 4 cut(s) 66, 400, 757, 1218
Lsp1109I GCAGC 1 cut(s) 974
LweI GCATC 3 cut(s) 249, 729, 1189
MaeI CTAG 3 cut(s) 141, 744, 1331
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 4 cut(s) 573, 1063, 1171, 1211
MalI GATC 5 cut(s) 656, 712, 983, 1041, 1071
MboI GATC 5 cut(s) 654, 710, 981, 1039, 1069
MboII GAAGA 4 cut(s) 444, 625, 1157, 1250
MfeI CAATTG 1 cut(s) 412
MhlI GDGCHC 2 cut(s) 71, 1026
MluCI AATT 8 cut(s) 19, 361, 412, 472, 579, 688, 817, 924
MlyI GAGTC 1 cut(s) 581
MmeI TCCRAC 4 cut(s) 716, 762, 877, 1067
MnlI CCTC 9 cut(s) 515, 598, 753, 967, 1036, 1085, 1123, 1304, 1327
MseI TTAA 3 cut(s) 492, 816, 1308
MslI CAYNNNNRTG 3 cut(s) 288, 1035, 1356
MspR9I CCNGG 4 cut(s) 722, 861, 893, 1263
MunI CAATTG 1 cut(s) 412
Mva1269I GAATGC 1 cut(s) 1351
MvaI CCWGG 4 cut(s) 722, 861, 893, 1263
MvnI CGCG 2 cut(s) 154, 181
NdeII GATC 5 cut(s) 654, 710, 981, 1039, 1069
NlaIII CATG 9 cut(s) 287, 595, 752, 1004, 1081, 1130, 1172, 1183, 1208
NlaIV GGNNCC 2 cut(s) 303, 858
NmuCI GTSAC 3 cut(s) 573, 1063, 1171
NspI RCATGY 2 cut(s) 752, 1208
OliI CACNNNNGTG 1 cut(s) 1035
PagI TCATGA 1 cut(s) 591
PciI ACATGT 1 cut(s) 1204
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PctI GAATGC 1 cut(s) 1351
PfeI GAWTC 2 cut(s) 548, 1338
PflFI GACNNNGTC 1 cut(s) 34
PfoI TCCNGGA 2 cut(s) 859, 1261
PkrI GCNGC 1 cut(s) 964
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
PscI ACATGT 1 cut(s) 1204
PshBI ATTAAT 1 cut(s) 816
Psp6I CCWGG 4 cut(s) 720, 859, 891, 1261
PspFI CCCAGC 2 cut(s) 144, 171
PspGI CCWGG 4 cut(s) 720, 859, 891, 1261
PspN4I GGNNCC 2 cut(s) 303, 858
PstNI CAGNNNCTG 2 cut(s) 1121, 1154
PsyI GACNNNGTC 1 cut(s) 34
RsaI GTAC 3 cut(s) 88, 374, 1125
RsaNI GTAC 3 cut(s) 87, 373, 1124
RseI CAYNNNNRTG 3 cut(s) 288, 1035, 1356
SaqAI TTAA 3 cut(s) 492, 816, 1308
SatI GCNGC 1 cut(s) 963
Sau3AI GATC 5 cut(s) 654, 710, 981, 1039, 1069
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 4 cut(s) 722, 861, 893, 1263
SduI GDGCHC 2 cut(s) 71, 1026
SfaNI GCATC 3 cut(s) 249, 729, 1189
SfcI CTRYAG 3 cut(s) 114, 381, 1155
SmiMI CAYNNNNRTG 3 cut(s) 288, 1035, 1356
Sse9I AATT 8 cut(s) 19, 361, 412, 472, 579, 688, 817, 924
SsiI CCGC 1 cut(s) 154
SspMI CTAG 3 cut(s) 141, 744, 1331
StyD4I CCNGG 4 cut(s) 720, 859, 891, 1261
StyI CCWWGG 1 cut(s) 1346
TaaI ACNGT 7 cut(s) 115, 130, 567, 697, 849, 1123, 1150
TaiI ACGT 1 cut(s) 38
TaqI TCGA 5 cut(s) 314, 430, 699, 709, 1341
TaqII GACCGA 1 cut(s) 1082
TasI AATT 8 cut(s) 19, 361, 412, 472, 579, 688, 817, 924
TatI WGTACW 3 cut(s) 86, 372, 1123
TfiI GAWTC 2 cut(s) 548, 1338
Tru1I TTAA 3 cut(s) 492, 816, 1308
Tru9I TTAA 3 cut(s) 492, 816, 1308
TscAI CASTG 7 cut(s) 572, 815, 854, 954, 1037, 1126, 1256
TseFI GTSAC 3 cut(s) 573, 1063, 1171
TseI GCWGC 1 cut(s) 962
Tsp45I GTSAC 3 cut(s) 573, 1063, 1171
TspDTI ATGAA 5 cut(s) 205, 272, 639, 1157, 1299
TspRI CASTG 7 cut(s) 572, 815, 854, 954, 1037, 1126, 1256
Tth111I GACNNNGTC 1 cut(s) 34
VspI ATTAAT 1 cut(s) 816
XbaI TCTAGA 1 cut(s) 1330
XceI RCATGY 2 cut(s) 752, 1208
XspI CTAG 3 cut(s) 141, 744, 1331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.