Rh4CG372300
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
62706596 .. 62708760
2165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG372300.1

Sequence Viewer

Length: 1080 bp
ATGGATTTAGCTACTAATAATAGTAGTTCTCGTGAGCTTCTTCAAGCTCAAGTCCATGTTTGGAATCACATATTGAAGTTCATAAACTCCATGGCACTAAAATGTGCAATTCAGTTAGGCATCCCAGATATCATTCACAACCATGGCCAACCCATAACCCTCTCCAACCTTATTTCTAGACTCAATGTCCACCCTTCTAAATCTCGCTTCATCTATCGCCTCATGCGCATTTTAGTCCAATGTGGATTTTTTGTCAAACATAACGACGTTCATCAAGAAGTAGTCTATTCCCTAACACCATCTTCCGAGCTTCTCCTCAATGACCAGCCTTTGAAAATGACACCGTTCTTGCTTCTCCAACTCGACCCAATGTTGATTGCCCCGTGGCACTTGTTGGGCTCGTGGTTCCGAAACCACGGATCCACCCCATTTGAGATGACATATGATATGTCGTTCTTCGATTTGGGGGCTCATGAACCAAGGTTTGGTAACATGTTTGACGAAGCAATGGTTGCCGACTCGGAGCTTGTTTCGAGGGTGGTGATTAAAGAGTGTCAAGGAGTGTTTGAGGGTTTGAATTCAATTGTTGATGTCGGAGGTGGTAGAGGAACTATGGCTTTTGCCATTGCCAATGCATTTCCACACATAAAATGCACTGTATTGGATCTCCCACATGTCATTGATAACTTGAAAGGGACCAACAACTTGGATTTTGTTGTGGGAGACATGTTTGAGAAAATACCCCCAGCAAATGCAATTTTACTCAAGTGGATTCTGCATGACTGGAATGATGAAGAAAGCGTGAAGATATTGAAGAGGTGTAGAGAAGCAGTTTCGATCAGCAAAAGTGACAGAGGAAAGGTTATCATTATAGACATCGTTGTAACCGTAGATAACAAGGAGATGAATAACAGGTCAACTGAAACACAACTGTTGTGGGACATGTTGATGATGGTGAATCTCACTGGAAGAGAACGCACTGAAAAAGAGTGGGAGAAGCTGTTTTTGGCTGCAGGATTCACTTACTATAAGATTTCACATACACTGGGAGTTAGGTCTCTTATTGAGGTTTACCTTTGA

Protein Analysis

359

Amino Acids

40.89

Weight (kDa)

6.16

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 21 - 107 9.7e-21 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 129 - 340 5.6e-55 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 227
AccB7I CCANNNNNTGG 1 cut(s) 485
AclWI GGATC 3 cut(s) 414, 427, 672
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 1 cut(s) 577
AfiI CCNNNNNNNGG 1 cut(s) 485
AflIII ACRYGT 4 cut(s) 492, 673, 726, 942
AgsI TTSAA 7 cut(s) 44, 76, 334, 577, 582, 691, 814
AhdI GACNNNNNGTC 1 cut(s) 185
AjuI GAANNNNNNNTTGG 4 cut(s) 468, 500, 989, 1021
AluBI AGCT 6 cut(s) 11, 37, 47, 310, 526, 1000
AluI AGCT 6 cut(s) 11, 37, 47, 310, 526, 1000
Alw26I GTCTC 2 cut(s) 717, 1062
AlwI GGATC 3 cut(s) 414, 427, 672
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 1010
ApoI RAATTY 1 cut(s) 577
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 696
AsuHPI GGTGA 2 cut(s) 553, 967
AvaII GGWCC 1 cut(s) 696
BalI TGGCCA 1 cut(s) 147
BamHI GGATCC 1 cut(s) 419
BanII GRGCYC 2 cut(s) 401, 472
BauI CACGAG 2 cut(s) 30, 400
BbvI GCAGC 1 cut(s) 997
BccI CCATC 2 cut(s) 307, 946
BcoDI GTCTC 2 cut(s) 717, 1062
BfaI CTAG 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 1011
BisI GCNGC 1 cut(s) 1011
BlsI GCNGC 1 cut(s) 1012
Bme18I GGWCC 1 cut(s) 696
BmeRI GACNNNNNGTC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 696
BmiI GGNNCC 3 cut(s) 407, 421, 697
BmrI ACTGGG 1 cut(s) 1055
BmsI GCATC 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 1055
BpuEI CTTGAG 2 cut(s) 33, 749
BsaI GGTCTC 1 cut(s) 1062
BsaJI CCNNGG 5 cut(s) 90, 142, 383, 415, 479
BsaXI ACNNNNNCTCC 2 cut(s) 986, 1016
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse1I ACTGG 3 cut(s) 788, 970, 1050
Bse3DI GCAATG 2 cut(s) 513, 624
BseDI CCNNGG 5 cut(s) 90, 142, 383, 415, 479
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMI GCAATG 2 cut(s) 513, 624
BseNI ACTGG 3 cut(s) 788, 970, 1050
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 997
BseYI CCCAGC 1 cut(s) 745
BshFI GGCC 1 cut(s) 147
BslFI GGGAC 2 cut(s) 709, 953
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 2 cut(s) 717, 1062
BsmFI GGGAC 2 cut(s) 709, 953
BsnI GGCC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 1062
Bsp1286I GDGCHC 2 cut(s) 401, 472
Bsp143I GATC 3 cut(s) 419, 664, 837
Bsp19I CCATGG 2 cut(s) 90, 142
BspANI GGCC 1 cut(s) 147
BspHI TCATGA 1 cut(s) 472
BspLI GGNNCC 3 cut(s) 407, 421, 697
BspMAI CTGCAG 1 cut(s) 1015
BspPI GGATC 3 cut(s) 414, 427, 672
BspTNI GGTCTC 1 cut(s) 1062
BsrDI GCAATG 2 cut(s) 513, 624
BsrI ACTGG 3 cut(s) 788, 970, 1050
BssECI CCNNGG 5 cut(s) 90, 142, 383, 415, 479
BssMI GATC 3 cut(s) 419, 664, 837
BssSI CACGAG 2 cut(s) 30, 400
BssT1I CCWWGG 3 cut(s) 90, 142, 479
Bst2BI CACGAG 2 cut(s) 30, 400
Bst4CI ACNGT 4 cut(s) 345, 658, 889, 933
Bst6I CTCTTC 2 cut(s) 809, 964
BstAPI GCANNNNNTGC 1 cut(s) 512
BstDSI CCRYGG 4 cut(s) 90, 142, 383, 415
BstF5I GGATG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 3 cut(s) 422, 667, 840
BstMAI GTCTC 2 cut(s) 717, 1062
BstMBI GATC 3 cut(s) 419, 664, 837
BstMWI GCNNNNNNNGC 2 cut(s) 225, 512
BstNSI RCATGY 4 cut(s) 496, 677, 730, 946
BstSFI CTRYAG 1 cut(s) 1011
BstV1I GCAGC 1 cut(s) 997
BstX2I RGATCY 2 cut(s) 419, 664
BstXI CCANNNNNNTGG 1 cut(s) 706
BstYI RGATCY 2 cut(s) 419, 664
BsuRI GGCC 1 cut(s) 147
BtgI CCRYGG 4 cut(s) 90, 142, 383, 415
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 4 cut(s) 654, 963, 978, 1043
CciI TCATGA 1 cut(s) 472
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 696
CspCI CAANNNNNGTGG 4 cut(s) 412, 447, 917, 952
DpnI GATC 3 cut(s) 421, 666, 839
DpnII GATC 3 cut(s) 419, 664, 837
DriI GACNNNNNGTC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 2 cut(s) 809, 964
Eam1105I GACNNNNNGTC 1 cut(s) 185
EarI CTCTTC 2 cut(s) 809, 964
Eco130I CCWWGG 3 cut(s) 90, 142, 479
Eco24I GRGCYC 2 cut(s) 401, 472
Eco31I GGTCTC 1 cut(s) 1062
Eco32I GATATC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 696
EcoRI GAATTC 1 cut(s) 577
EcoRV GATATC 1 cut(s) 130
EcoT14I CCWWGG 3 cut(s) 90, 142, 479
EcoT22I ATGCAT 1 cut(s) 637
EcoT38I GRGCYC 2 cut(s) 401, 472
ErhI CCWWGG 3 cut(s) 90, 142, 479
FaqI GGGAC 2 cut(s) 709, 953
FauNDI CATATG 1 cut(s) 442
Fnu4HI GCNGC 1 cut(s) 1011
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 2 cut(s) 401, 472
Fsp4HI GCNGC 1 cut(s) 1011
FspAI RTGCGCAY 1 cut(s) 227
FspBI CTAG 1 cut(s) 177
FspI TGCGCA 1 cut(s) 227
GlaI GCGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 1011
GsaI CCCAGC 1 cut(s) 749
HaeIII GGCC 1 cut(s) 147
HhaI GCGC 1 cut(s) 228
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 918
HindII GTYRAC 1 cut(s) 918
HinfI GANTC 6 cut(s) 64, 180, 518, 772, 958, 1017
HphI GGTGA 2 cut(s) 553, 967
Hpy166II GTNNAC 3 cut(s) 190, 918, 1072
Hpy188I TCNGA 4 cut(s) 307, 410, 523, 596
Hpy188III TCNNGA 4 cut(s) 32, 177, 275, 473
Hpy8I GTNNAC 3 cut(s) 190, 918, 1072
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 4 cut(s) 345, 658, 889, 933
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 6 cut(s) 107, 635, 654, 755, 778, 1013
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 512
HpySE526I ACGT 1 cut(s) 267
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 3 cut(s) 419, 664, 837
LmnI GCTCC 1 cut(s) 523
LpnPI CCDG 8 cut(s) 138, 338, 759, 769, 898, 951, 999, 1031
Lsp1109I GCAGC 1 cut(s) 997
LweI GCATC 1 cut(s) 129
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 3 cut(s) 488, 848, 883
MalI GATC 3 cut(s) 421, 666, 839
MboI GATC 3 cut(s) 419, 664, 837
MboII GAAGA 7 cut(s) 32, 294, 448, 806, 817, 826, 981
MfeI CAATTG 1 cut(s) 582
MflI RGATCY 2 cut(s) 419, 664
MhlI GDGCHC 2 cut(s) 401, 472
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 4 cut(s) 108, 577, 582, 756
MluNI TGGCCA 1 cut(s) 147
MlyI GAGTC 2 cut(s) 174, 512
MmeI TCCRAC 3 cut(s) 189, 382, 574
Mox20I TGGCCA 1 cut(s) 147
Mph1103I ATGCAT 1 cut(s) 637
MscI TGGCCA 1 cut(s) 147
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 3 cut(s) 100, 141, 947
Msp20I TGGCCA 1 cut(s) 147
MunI CAATTG 1 cut(s) 582
MwoI GCNNNNNNNGC 2 cut(s) 225, 512
NcoI CCATGG 2 cut(s) 90, 142
NdeI CATATG 1 cut(s) 442
NdeII GATC 3 cut(s) 419, 664, 837
NlaIV GGNNCC 3 cut(s) 407, 421, 697
NmuCI GTSAC 1 cut(s) 848
NsbI TGCGCA 1 cut(s) 227
NsiI ATGCAT 1 cut(s) 637
NspI RCATGY 4 cut(s) 496, 677, 730, 946
PagI TCATGA 1 cut(s) 472
PciI ACATGT 4 cut(s) 492, 673, 726, 942
PcsI WCGNNNNNNNCGW 1 cut(s) 885
PfeI GAWTC 4 cut(s) 64, 772, 958, 1017
PflMI CCANNNNNTGG 1 cut(s) 485
PkrI GCNGC 1 cut(s) 1012
PleI GAGTC 2 cut(s) 174, 512
PpsI GAGTC 2 cut(s) 174, 512
PscI ACATGT 4 cut(s) 492, 673, 726, 942
PspFI CCCAGC 1 cut(s) 745
PspN4I GGNNCC 3 cut(s) 407, 421, 697
PspPI GGNCC 1 cut(s) 696
PstI CTGCAG 1 cut(s) 1015
PsuI RGATCY 2 cut(s) 419, 664
RseI CAYNNNNRTG 3 cut(s) 100, 141, 947
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 1 cut(s) 1011
Sau3AI GATC 3 cut(s) 419, 664, 837
Sau96I GGNCC 1 cut(s) 696
SchI GAGTC 2 cut(s) 174, 512
SduI GDGCHC 2 cut(s) 401, 472
SfaNI GCATC 1 cut(s) 129
SfcI CTRYAG 1 cut(s) 1011
SinI GGWCC 1 cut(s) 696
SmiMI CAYNNNNRTG 3 cut(s) 100, 141, 947
SmlI CTYRAG 2 cut(s) 48, 764
SmoI CTYRAG 2 cut(s) 48, 764
Sse9I AATT 4 cut(s) 108, 577, 582, 756
SspMI CTAG 1 cut(s) 177
StyI CCWWGG 3 cut(s) 90, 142, 479
TaaI ACNGT 4 cut(s) 345, 658, 889, 933
TaiI ACGT 1 cut(s) 270
TaqI TCGA 4 cut(s) 363, 459, 533, 836
TasI AATT 4 cut(s) 108, 577, 582, 756
TfiI GAWTC 4 cut(s) 64, 772, 958, 1017
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 4 cut(s) 661, 970, 985, 1050
TseFI GTSAC 1 cut(s) 848
TseI GCWGC 1 cut(s) 1010
Tsp45I GTSAC 1 cut(s) 848
TspDTI ATGAA 6 cut(s) 70, 199, 260, 489, 807, 920
TspGWI ACGGA 1 cut(s) 432
TspRI CASTG 4 cut(s) 661, 970, 985, 1050
Van91I CCANNNNNTGG 1 cut(s) 485
VpaK11BI GGWCC 1 cut(s) 696
XapI RAATTY 1 cut(s) 577
XbaI TCTAGA 1 cut(s) 176
XceI RCATGY 4 cut(s) 496, 677, 730, 946
XspI CTAG 1 cut(s) 177
Zsp2I ATGCAT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.