RLG00000006508
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
7856665 .. 7857245
581 bp
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UTR
Exon/CDS
Intron
RLM00000006508

Sequence Viewer

Length: 468 bp
ATGGCTTTTGCCATTGCCAATGCATTTCCACACATAAAATGCACTGTATTGGATCTCCCACATGTCATTGATAACTTGAAAGGGACCAACAACTTGGATTTTGTTGTGGGAGACATGTTTGAGAAAATACCCCCAGCAAATGCAATTTTACTCAAGTGGATTCTGCATGACTGGAATGATGAAGAAAGCGTGAAGATATTGAAGAGGTGTAGAGAAGCAGTTTCGATCAGCAAAAGTGACAGAGGAAAGGTTATCATTATAGACATCGTTGTAACCGTAGATAACAAGGAGATGAATAACAGGTCAACTGAAACACAACTGTTATGGGACATGTTGATGATGGTGAATCTCACTGGAAGAGAACGCACTGAAAAAGAGTGGGAGAAGCTGTTTTTGGCTGCAGGATTCACTTACTATAAGATTTCACATACACTGGGAGTTAGGTCTCTTATTGAGGTTTACCTTTAA

Protein Analysis

156

Amino Acids

17.84

Weight (kDa)

6.08

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 2 - 136 1.4e-37 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 60
AflIII ACRYGT 3 cut(s) 61, 114, 330
AgsI TTSAA 2 cut(s) 79, 202
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AluBI AGCT 1 cut(s) 388
AluI AGCT 1 cut(s) 388
Alw26I GTCTC 2 cut(s) 105, 450
AlwI GGATC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 355
AvaII GGWCC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 385
BccI CCATC 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 105, 450
BfmI CTRYAG 1 cut(s) 399
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 85
BmrI ACTGGG 1 cut(s) 443
BmuI ACTGGG 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 450
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bse1I ACTGG 3 cut(s) 176, 358, 438
Bse3DI GCAATG 1 cut(s) 12
BseMI GCAATG 1 cut(s) 12
BseNI ACTGG 3 cut(s) 176, 358, 438
BseXI GCAGC 1 cut(s) 385
BseYI CCCAGC 1 cut(s) 133
BslFI GGGAC 2 cut(s) 97, 341
BsmAI GTCTC 2 cut(s) 105, 450
BsmFI GGGAC 2 cut(s) 97, 341
Bso31I GGTCTC 1 cut(s) 450
Bsp143I GATC 2 cut(s) 52, 225
BspLI GGNNCC 1 cut(s) 85
BspMAI CTGCAG 1 cut(s) 403
BspPI GGATC 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 450
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 3 cut(s) 176, 358, 438
BssMI GATC 2 cut(s) 52, 225
Bst4CI ACNGT 3 cut(s) 46, 277, 321
Bst6I CTCTTC 2 cut(s) 197, 352
BstKTI GATC 2 cut(s) 55, 228
BstMAI GTCTC 2 cut(s) 105, 450
BstMBI GATC 2 cut(s) 52, 225
BstNSI RCATGY 3 cut(s) 65, 118, 334
BstSFI CTRYAG 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 52
BstXI CCANNNNNNTGG 1 cut(s) 94
BstYI RGATCY 1 cut(s) 52
BtsIMutI CAGTG 4 cut(s) 42, 351, 366, 431
Cfr13I GGNCC 1 cut(s) 84
CviAII CATG 4 cut(s) 62, 115, 167, 331
CviJI RGCY 3 cut(s) 5, 388, 398
CviKI_1 RGCY 3 cut(s) 5, 388, 398
DpnI GATC 2 cut(s) 54, 227
DpnII GATC 2 cut(s) 52, 225
Eam1104I CTCTTC 2 cut(s) 197, 352
EarI CTCTTC 2 cut(s) 197, 352
Eco31I GGTCTC 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 84
EcoT22I ATGCAT 1 cut(s) 25
FaeI CATG 4 cut(s) 65, 118, 170, 334
FaiI YATR 9 cut(s) 35, 63, 116, 168, 260, 325, 332, 417, 429
FaqI GGGAC 2 cut(s) 97, 341
FatI CATG 4 cut(s) 61, 114, 166, 330
Fnu4HI GCNGC 1 cut(s) 399
Fsp4HI GCNGC 1 cut(s) 399
GluI GCNGC 1 cut(s) 399
GsaI CCCAGC 1 cut(s) 137
Hin1II CATG 4 cut(s) 65, 118, 170, 334
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 3 cut(s) 160, 346, 405
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 2 cut(s) 306, 460
Hpy8I GTNNAC 2 cut(s) 306, 460
HpyCH4III ACNGT 3 cut(s) 46, 277, 321
HpyCH4V TGCA 5 cut(s) 23, 42, 143, 166, 401
Hsp92II CATG 4 cut(s) 65, 118, 170, 334
Kzo9I GATC 2 cut(s) 52, 225
LpnPI CCDG 6 cut(s) 147, 157, 286, 339, 387, 419
Lsp1109I GCAGC 1 cut(s) 385
MaeIII GTNAC 2 cut(s) 236, 271
MalI GATC 2 cut(s) 54, 227
MboI GATC 2 cut(s) 52, 225
MboII GAAGA 4 cut(s) 194, 205, 214, 369
MflI RGATCY 1 cut(s) 52
MluCI AATT 1 cut(s) 144
MnlI CCTC 3 cut(s) 198, 236, 448
Mph1103I ATGCAT 1 cut(s) 25
MseI TTAA 1 cut(s) 466
MslI CAYNNNNRTG 1 cut(s) 335
NdeII GATC 2 cut(s) 52, 225
NlaIII CATG 4 cut(s) 65, 118, 170, 334
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 236
NsiI ATGCAT 1 cut(s) 25
NspI RCATGY 3 cut(s) 65, 118, 334
PciI ACATGT 3 cut(s) 61, 114, 330
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PfeI GAWTC 3 cut(s) 160, 346, 405
PkrI GCNGC 1 cut(s) 400
PscI ACATGT 3 cut(s) 61, 114, 330
PspFI CCCAGC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 84
PstI CTGCAG 1 cut(s) 403
PsuI RGATCY 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 1 cut(s) 466
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 2 cut(s) 52, 225
Sau96I GGNCC 1 cut(s) 84
SetI ASST 7 cut(s) 209, 252, 305, 390, 446, 459, 465
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 144
TaaI ACNGT 3 cut(s) 46, 277, 321
TaqI TCGA 1 cut(s) 224
TasI AATT 1 cut(s) 144
TfiI GAWTC 3 cut(s) 160, 346, 405
Tru1I TTAA 1 cut(s) 466
Tru9I TTAA 1 cut(s) 466
TscAI CASTG 4 cut(s) 49, 358, 373, 438
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 2 cut(s) 195, 308
TspRI CASTG 4 cut(s) 49, 358, 373, 438
VpaK11BI GGWCC 1 cut(s) 84
XceI RCATGY 3 cut(s) 65, 118, 334
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.