Rh2AG330900
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000692
Physical Location & Seq
Forward (+)
47798561 .. 47799168
608 bp
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UTR
Exon/CDS
Intron
Rh2AG330900.1

Sequence Viewer

Length: 435 bp
ATGACTCTGCTCAATCCTAACTTCACAAACACATGCTATTATATGAGCACTTGGTTCCAAAATGATGACCCTATGCCATTTAACATGGCATATGGGATGACATTTTGGGACTACATCACCCAGGTGCCAAGTTGTGCCAACCTTTTCAATGATGCCATGGCTAGTGATACTCGTTTGATGACCAGCGTGTCACTTAAAAAGTGCAAGGGGGTATTCGAGGGATTGAAATCATTAGTTGATGTTGGGGGTGGTACAGGAACAATGGCCAAGGCCATTGTTGATGCATTCCCAGAAATTGACTGCACCGTACTTGATCTCCCACATGTGGTGGCTGATCTGCAAGGAAGTAAGAACCTGAAATATGCTGGAGGGGACATGTTTGAGGCAGTTCCTCCGGCAGATGCAATTATGTTAAAGGTAATGAAGAACAATTAA

Protein Analysis

144

Amino Acids

15.8

Weight (kDa)

4.59

Isoelectric Point (pI)

30.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 14 - 140 4.5e-31 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 187
AccB1I GGYRCC 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 264
AfaI GTAC 2 cut(s) 253, 309
AfiI CCNNNNNNNGG 1 cut(s) 325
AflIII ACRYGT 2 cut(s) 322, 375
AgsI TTSAA 2 cut(s) 148, 226
AjnI CCWGG 1 cut(s) 120
AleI CACNNNNGTG 1 cut(s) 122
Alw21I GWGCWC 1 cut(s) 50
AoxI GGCC 2 cut(s) 264, 270
AsuHPI GGTGA 1 cut(s) 109
BalI TGGCCA 1 cut(s) 266
BanI GGYRCC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 122
BfaI CTAG 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 56, 126
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 3 cut(s) 142, 271, 391
BpmI CTGGAG 1 cut(s) 387
BsaBI GATNNNNATC 1 cut(s) 226
BsaJI CCNNGG 3 cut(s) 120, 156, 267
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse8I GATNNNNATC 1 cut(s) 226
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 3 cut(s) 120, 156, 267
BseGI GGATG 1 cut(s) 102
BseJI GATNNNNATC 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 325
BsgI GTGCAG 1 cut(s) 286
BshFI GGCC 2 cut(s) 266, 272
BshNI GGYRCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 50
BsiSI CCGG 1 cut(s) 395
BslFI GGGAC 2 cut(s) 122, 386
BslI CCNNNNNNNGG 1 cut(s) 325
BsmFI GGGAC 2 cut(s) 122, 386
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 2 cut(s) 266, 272
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 313, 334
Bsp19I CCATGG 1 cut(s) 156
BspANI GGCC 2 cut(s) 266, 272
BspLI GGNNCC 2 cut(s) 56, 126
BspT107I GGYRCC 1 cut(s) 124
BssECI CCNNGG 3 cut(s) 120, 156, 267
BssMI GATC 2 cut(s) 313, 334
BssT1I CCWWGG 2 cut(s) 156, 267
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 307
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 102
BstKTI GATC 2 cut(s) 316, 337
BstMBI GATC 2 cut(s) 313, 334
BstNI CCWGG 1 cut(s) 122
BstNSI RCATGY 3 cut(s) 36, 326, 379
BstSCI CCNGG 1 cut(s) 120
BsuRI GGCC 2 cut(s) 266, 272
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 102
Csp6I GTAC 2 cut(s) 252, 308
CviAII CATG 5 cut(s) 33, 85, 157, 323, 376
CviJI RGCY 4 cut(s) 161, 266, 272, 332
CviKI_1 RGCY 4 cut(s) 161, 266, 272, 332
CviQI GTAC 2 cut(s) 252, 308
DpnI GATC 2 cut(s) 315, 336
DpnII GATC 2 cut(s) 313, 334
DrdI GACNNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 264
Eco130I CCWWGG 2 cut(s) 156, 267
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 2 cut(s) 156, 267
EcoT22I ATGCAT 1 cut(s) 286
ErhI CCWWGG 2 cut(s) 156, 267
FaeI CATG 5 cut(s) 36, 88, 160, 326, 379
FaqI GGGAC 2 cut(s) 122, 386
FatI CATG 5 cut(s) 32, 84, 156, 322, 375
FauNDI CATATG 1 cut(s) 91
FokI GGATG 1 cut(s) 109
FspBI CTAG 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 2 cut(s) 266, 272
HapII CCGG 1 cut(s) 395
Hin1II CATG 5 cut(s) 36, 88, 160, 326, 379
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 395
HphI GGTGA 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4V TGCA 5 cut(s) 204, 284, 303, 340, 404
Hsp92II CATG 5 cut(s) 36, 88, 160, 326, 379
Kzo9I GATC 2 cut(s) 313, 334
LpnPI CCDG 8 cut(s) 107, 134, 196, 240, 303, 351, 368, 408
LweI GCATC 3 cut(s) 142, 271, 391
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 189
MalI GATC 2 cut(s) 315, 336
MboI GATC 2 cut(s) 313, 334
MhlI GDGCHC 1 cut(s) 50
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 3 cut(s) 294, 405, 430
MluNI TGGCCA 1 cut(s) 266
MnlI CCTC 4 cut(s) 211, 362, 376, 402
Mox20I TGGCCA 1 cut(s) 266
Mph1103I ATGCAT 1 cut(s) 286
MscI TGGCCA 1 cut(s) 266
MseI TTAA 4 cut(s) 81, 195, 413, 433
MslI CAYNNNNRTG 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 266
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 1 cut(s) 122
NcoI CCATGG 1 cut(s) 156
NdeI CATATG 1 cut(s) 91
NdeII GATC 2 cut(s) 313, 334
NlaIII CATG 5 cut(s) 36, 88, 160, 326, 379
NlaIV GGNNCC 2 cut(s) 56, 126
NmuCI GTSAC 1 cut(s) 189
NsiI ATGCAT 1 cut(s) 286
NspI RCATGY 3 cut(s) 36, 326, 379
OliI CACNNNNGTG 1 cut(s) 122
PciI ACATGT 2 cut(s) 322, 375
PctI GAATGC 1 cut(s) 284
PscI ACATGT 2 cut(s) 322, 375
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 56, 126
RsaI GTAC 2 cut(s) 253, 309
RsaNI GTAC 2 cut(s) 252, 308
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 4 cut(s) 81, 195, 413, 433
Sau3AI GATC 2 cut(s) 313, 334
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 1 cut(s) 50
SetI ASST 4 cut(s) 126, 144, 357, 420
SfaNI GCATC 3 cut(s) 142, 271, 391
SmiMI CAYNNNNRTG 1 cut(s) 122
Sse9I AATT 3 cut(s) 294, 405, 430
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 2 cut(s) 156, 267
TaaI ACNGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 216
TasI AATT 3 cut(s) 294, 405, 430
Tru1I TTAA 4 cut(s) 81, 195, 413, 433
Tru9I TTAA 4 cut(s) 81, 195, 413, 433
TseFI GTSAC 1 cut(s) 189
Tsp45I GTSAC 1 cut(s) 189
XceI RCATGY 3 cut(s) 36, 326, 379
XspI CTAG 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.