Prupe.3G129600_v2.0.a1
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000692
Physical Location & Seq
Reverse (-)
13200224 .. 13201713
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G129600.1

Sequence Viewer

Length: 1113 bp
ATGTGCATCAATCTTAATTCTCACCACATCTTGAGCCAACAGCAAGGCATGGGTAGTGAAGTGAGAGCAAGTCATGAGCTACTCCAAGCACAAGCCCACATTTGGAACCACATTTTCAGCTTCATAAATTCTATGTCCCTCAAATGTGCAGCTCAATTAGGTATCCCAGATGTCATCCAAAAACATGGCCAGCCCATGACTCTTTCTGAGCTTGTCTCTGCCCTACCAATTTCCCCAACAAAAGCTCATTTCATCCCACGCCTCATGCGAATCTTAGTCCACTCCGGCTTCTTTGCTAGAGAAAGTCTGAGTGGCGGCGAACAAGGTTATGTACTAACAGACGCCTCCGCGCTCCTCCTGAAAGACAATCCCATGAGCGCAAGGGCCTTCTTACTTGCTGTGCTCAATCCCATCTTAACTGATCCATGGCAGTATTTGACCACTTGGTTCCAAAATGACAATCCTACGCTGTTTCACGTGGTGCATGGGATGACATTTTGGGATTATGGGAACCAGGACCCAGCTCTTGCACATTTTTTCAATGACGCCATGGCTAGCGATGCCCGGTTGATCTCGAGCTTGGTGATTGATGAGTACAAGGGGGTGTTTCAAGGAGTGGATTCGTTGGTTGACGTGGGCGGTGGGACGGGAACCATGGCCAAGTCCATTGCTGATGCCTTCCCTCATATGAAATGCACTGTACTTGATCTCCCTCATGTAGTTGCTAACCTAAAAGGGAGTAAGAACTTGGAATATGTTGCAGGGGACATGTTTGAGGCTGTTCCTGCGGCCGATGCTATTTTTTTGAAGTGGATATTGCATGACTGGAGTGATGAAGAATGTGTGAAAATACTTGAGAAATGTAAAGAGGCAATTACAAGAGAGGGCAAGAAAGGCAAGGTGATTATCGTAGATATGACGGTGGAGAATAAGAATACAGATAAGGAATCTGGGGAAACACAACTTTTCTTTGATATGGAGATGATGGTCTTGGCTACAGGAAAAGAAAGGAATGAGAATGAATGGGCTAAGCTCTTTTTTGACGCAGGTTTCAGCCACTATAAGATTACTCCTTGTTTGGGTTTAAGGTCTCTCATTGAGGTTTATCCTTGA

Protein Analysis

371

Amino Acids

41.22

Weight (kDa)

5.56

Isoelectric Point (pI)

27.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1037
AccII CGCG 1 cut(s) 350
AciI CCGC 4 cut(s) 315, 348, 639, 788
AclWI GGATC 1 cut(s) 416
AcoI YGGCCR 3 cut(s) 187, 657, 789
AcsI RAATTY 1 cut(s) 127
AcvI CACGTG 1 cut(s) 478
AcyI GRCGYC 2 cut(s) 342, 546
AdeI CACNNNGTG 1 cut(s) 481
AfaI GTAC 3 cut(s) 333, 596, 702
AfiI CCNNNNNNNGG 2 cut(s) 102, 1079
AflIII ACRYGT 1 cut(s) 768
AgsI TTSAA 3 cut(s) 541, 611, 808
AjiI CACGTC 1 cut(s) 634
AjnI CCWGG 1 cut(s) 513
AluBI AGCT 8 cut(s) 79, 120, 152, 211, 245, 524, 579, 1033
AluI AGCT 8 cut(s) 79, 120, 152, 211, 245, 524, 579, 1033
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 2 cut(s) 220, 1095
AlwI GGATC 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 574
AoxI GGCC 4 cut(s) 187, 384, 657, 789
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 127
AspLEI GCGC 2 cut(s) 352, 380
AspS9I GGNCC 2 cut(s) 384, 517
AsuC2I CCSGG 1 cut(s) 565
AsuHPI GGTGA 3 cut(s) 14, 595, 913
AsuNHI GCTAGC 1 cut(s) 554
AvaI CYCGRG 1 cut(s) 574
AvaII GGWCC 1 cut(s) 517
BalI TGGCCA 2 cut(s) 189, 659
BbrPI CACGTG 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 161
BccI CCATC 2 cut(s) 419, 979
BciT130I CCWGG 1 cut(s) 515
BciVI GTATCC 1 cut(s) 173
BcnI CCSGG 1 cut(s) 565
BcoDI GTCTC 2 cut(s) 220, 1095
BfaI CTAG 2 cut(s) 297, 555
BfmI CTRYAG 1 cut(s) 996
BfuAI ACCTGC 1 cut(s) 1037
BfuI GTATCC 1 cut(s) 173
BisI GCNGC 3 cut(s) 150, 316, 789
BlpI GCTNAGC 1 cut(s) 1029
BlsI GCNGC 3 cut(s) 151, 317, 790
Bme1390I CCNGG 2 cut(s) 515, 565
Bme18I GGWCC 1 cut(s) 517
BmeT110I CYCGRG 1 cut(s) 574
BmgBI CACGTC 1 cut(s) 634
BmgT120I GGNCC 2 cut(s) 384, 517
BmiI GGNNCC 5 cut(s) 107, 449, 512, 519, 652
BmrFI CCNGG 2 cut(s) 515, 565
BmsI GCATC 4 cut(s) 15, 550, 664, 784
BmtI GCTAGC 1 cut(s) 558
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpmI CTGGAG 1 cut(s) 847
Bpu1102I GCTNAGC 1 cut(s) 1029
BpuEI CTTGAG 2 cut(s) 52, 875
BpuMI CCSGG 1 cut(s) 565
BsaAI YACGTR 1 cut(s) 478
BsaHI GRCGYC 2 cut(s) 342, 546
BsaI GGTCTC 1 cut(s) 1095
BsaJI CCNNGG 3 cut(s) 425, 549, 654
BsaXI ACNNNNNCTCC 2 cut(s) 693, 723
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 1079
Bse1I ACTGG 1 cut(s) 830
Bse3DI GCAATG 1 cut(s) 666
BseBI CCWGG 1 cut(s) 515
BseDI CCNNGG 3 cut(s) 425, 549, 654
BseGI GGATG 3 cut(s) 174, 252, 495
BseLI CCNNNNNNNGG 2 cut(s) 102, 1079
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 2 cut(s) 198, 299
BseNI ACTGG 1 cut(s) 830
BseRI GAGGAG 1 cut(s) 344
BseX3I CGGCCG 1 cut(s) 789
BseXI GCAGC 1 cut(s) 161
BseYI CCCAGC 1 cut(s) 520
BsgI GTGCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 350
Bsh1285I CGRYCG 1 cut(s) 792
BshFI GGCC 4 cut(s) 189, 386, 659, 791
BsiEI CGRYCG 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 574
BsiSI CCGG 2 cut(s) 285, 565
BslFI GGGAC 3 cut(s) 121, 658, 779
BslI CCNNNNNNNGG 2 cut(s) 102, 1079
BsmAI GTCTC 2 cut(s) 220, 1095
BsmFI GGGAC 3 cut(s) 121, 658, 779
BsnI GGCC 4 cut(s) 189, 386, 659, 791
Bso31I GGTCTC 1 cut(s) 1095
BsoBI CYCGRG 1 cut(s) 574
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 3 cut(s) 421, 570, 706
Bsp1720I GCTNAGC 1 cut(s) 1029
Bsp19I CCATGG 3 cut(s) 425, 549, 654
BspACI CCGC 4 cut(s) 315, 348, 639, 788
BspANI GGCC 4 cut(s) 189, 386, 659, 791
BspCNI CTCAG 2 cut(s) 199, 300
BspFNI CGCG 1 cut(s) 350
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 5 cut(s) 107, 449, 512, 519, 652
BspMI ACCTGC 1 cut(s) 1037
BspOI GCTAGC 1 cut(s) 558
BspPI GGATC 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 1095
BsrDI GCAATG 1 cut(s) 666
BsrI ACTGG 1 cut(s) 830
BssECI CCNNGG 3 cut(s) 425, 549, 654
BssMI GATC 3 cut(s) 421, 570, 706
BssNI GRCGYC 2 cut(s) 342, 546
BssT1I CCWWGG 3 cut(s) 425, 549, 654
Bst2UI CCWGG 1 cut(s) 515
Bst4CI ACNGT 2 cut(s) 700, 922
BstACI GRCGYC 2 cut(s) 342, 546
BstBAI YACGTR 1 cut(s) 478
BstC8I GCNNGC 2 cut(s) 191, 556
BstDEI CTNAG 4 cut(s) 207, 274, 308, 1029
BstDSI CCRYGG 3 cut(s) 425, 549, 654
BstF5I GGATG 3 cut(s) 174, 252, 495
BstFNI CGCG 1 cut(s) 350
BstHHI GCGC 2 cut(s) 352, 380
BstKTI GATC 3 cut(s) 424, 573, 709
BstMAI GTCTC 2 cut(s) 220, 1095
BstMBI GATC 3 cut(s) 421, 570, 706
BstMCI CGRYCG 1 cut(s) 792
BstMWI GCNNNNNNNGC 4 cut(s) 560, 785, 794, 894
BstNI CCWGG 1 cut(s) 515
BstNSI RCATGY 1 cut(s) 772
BstSCI CCNGG 2 cut(s) 513, 563
BstSFI CTRYAG 1 cut(s) 996
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 1 cut(s) 161
BstXI CCANNNNNNTGG 1 cut(s) 185
BstZI CGGCCG 1 cut(s) 789
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 4 cut(s) 189, 386, 659, 791
BtgI CCRYGG 3 cut(s) 425, 549, 654
BtgZI GCGATG 1 cut(s) 573
BtrI CACGTC 1 cut(s) 634
BtsCI GGATG 3 cut(s) 174, 252, 495
BtsIMutI CAGTG 1 cut(s) 696
BveI ACCTGC 1 cut(s) 1037
Cac8I GCNNGC 2 cut(s) 191, 556
CciI TCATGA 1 cut(s) 73
CfoI GCGC 2 cut(s) 352, 380
Cfr13I GGNCC 2 cut(s) 384, 517
CseI GACGC 3 cut(s) 350, 554, 1052
Csp6I GTAC 3 cut(s) 332, 595, 701
CviQI GTAC 3 cut(s) 332, 595, 701
DdeI CTNAG 4 cut(s) 207, 274, 308, 1029
DpnI GATC 3 cut(s) 423, 572, 708
DpnII GATC 3 cut(s) 421, 570, 706
DraIII CACNNNGTG 1 cut(s) 481
EaeI YGGCCR 3 cut(s) 187, 657, 789
EagI CGGCCG 1 cut(s) 789
EclXI CGGCCG 1 cut(s) 789
Eco130I CCWWGG 3 cut(s) 425, 549, 654
Eco31I GGTCTC 1 cut(s) 1095
Eco47I GGWCC 1 cut(s) 517
Eco52I CGGCCG 1 cut(s) 789
Eco72I CACGTG 1 cut(s) 478
Eco88I CYCGRG 1 cut(s) 574
EcoO109I RGGNCCY 2 cut(s) 384, 517
EcoRII CCWGG 1 cut(s) 513
EcoT14I CCWWGG 3 cut(s) 425, 549, 654
ErhI CCWWGG 3 cut(s) 425, 549, 654
FaqI GGGAC 3 cut(s) 121, 658, 779
FauNDI CATATG 1 cut(s) 687
Fnu4HI GCNGC 3 cut(s) 150, 316, 789
FokI GGATG 3 cut(s) 161, 239, 502
Fsp4HI GCNGC 3 cut(s) 150, 316, 789
FspBI CTAG 2 cut(s) 297, 555
GlaI GCGC 2 cut(s) 351, 379
GluI GCNGC 3 cut(s) 150, 316, 789
GsaI CCCAGC 1 cut(s) 524
GsuI CTGGAG 1 cut(s) 847
HaeIII GGCC 4 cut(s) 189, 386, 659, 791
HapII CCGG 2 cut(s) 285, 565
HgaI GACGC 3 cut(s) 350, 554, 1052
HhaI GCGC 2 cut(s) 352, 380
Hin1I GRCGYC 2 cut(s) 342, 546
Hin6I GCGC 2 cut(s) 350, 378
HinP1I GCGC 2 cut(s) 350, 378
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HinfI GANTC 4 cut(s) 199, 270, 620, 947
HpaII CCGG 2 cut(s) 285, 565
HphI GGTGA 3 cut(s) 14, 595, 913
Hpy166II GTNNAC 2 cut(s) 280, 631
Hpy188I TCNGA 2 cut(s) 208, 309
Hpy188III TCNNGA 4 cut(s) 31, 74, 358, 574
Hpy8I GTNNAC 2 cut(s) 280, 631
HpyAV CCTTC 2 cut(s) 397, 688
HpyCH4III ACNGT 2 cut(s) 700, 922
HpyCH4IV ACGT 2 cut(s) 477, 633
HpyCH4V TGCA 7 cut(s) 6, 149, 484, 530, 696, 761, 820
HpyF10VI GCNNNNNNNGC 4 cut(s) 560, 785, 794, 894
HpyF3I CTNAG 4 cut(s) 207, 274, 308, 1029
HpySE526I ACGT 2 cut(s) 477, 633
Hsp92I GRCGYC 2 cut(s) 342, 546
HspAI GCGC 2 cut(s) 350, 378
Kzo9I GATC 3 cut(s) 421, 570, 706
LmnI GCTCC 1 cut(s) 357
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 4 cut(s) 15, 550, 664, 784
MaeI CTAG 2 cut(s) 297, 555
MaeII ACGT 2 cut(s) 477, 633
MalI GATC 3 cut(s) 423, 572, 708
MboI GATC 3 cut(s) 421, 570, 706
MboII GAAGA 1 cut(s) 848
MhlI GDGCHC 1 cut(s) 405
MlsI TGGCCA 2 cut(s) 189, 659
MluCI AATT 5 cut(s) 16, 127, 155, 228, 873
MluNI TGGCCA 2 cut(s) 189, 659
MlyI GAGTC 1 cut(s) 193
Mox20I TGGCCA 2 cut(s) 189, 659
MscI TGGCCA 2 cut(s) 189, 659
MseI TTAA 3 cut(s) 15, 416, 1085
Msp20I TGGCCA 2 cut(s) 189, 659
MspI CCGG 2 cut(s) 285, 565
MspR9I CCNGG 2 cut(s) 515, 565
MvaI CCWGG 1 cut(s) 515
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 4 cut(s) 560, 785, 794, 894
NciI CCSGG 1 cut(s) 565
NcoI CCATGG 3 cut(s) 425, 549, 654
NdeI CATATG 1 cut(s) 687
NdeII GATC 3 cut(s) 421, 570, 706
NheI GCTAGC 1 cut(s) 554
NlaIV GGNNCC 5 cut(s) 107, 449, 512, 519, 652
NspI RCATGY 1 cut(s) 772
PaeR7I CTCGAG 1 cut(s) 574
PagI TCATGA 1 cut(s) 73
PciI ACATGT 1 cut(s) 768
PcsI WCGNNNNNNNCGW 1 cut(s) 265
PfeI GAWTC 3 cut(s) 270, 620, 947
PkrI GCNGC 3 cut(s) 151, 317, 790
PleI GAGTC 1 cut(s) 193
PmaCI CACGTG 1 cut(s) 478
PmlI CACGTG 1 cut(s) 478
PpsI GAGTC 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 478
PpuMI RGGWCCY 1 cut(s) 517
PscI ACATGT 1 cut(s) 768
Psp5II RGGWCCY 1 cut(s) 517
Psp6I CCWGG 1 cut(s) 513
PspCI CACGTG 1 cut(s) 478
PspFI CCCAGC 1 cut(s) 520
PspGI CCWGG 1 cut(s) 513
PspN4I GGNNCC 5 cut(s) 107, 449, 512, 519, 652
PspPI GGNCC 2 cut(s) 384, 517
PspPPI RGGWCCY 1 cut(s) 517
RsaI GTAC 3 cut(s) 333, 596, 702
RsaNI GTAC 3 cut(s) 332, 595, 701
SaqAI TTAA 3 cut(s) 15, 416, 1085
SatI GCNGC 3 cut(s) 150, 316, 789
Sau3AI GATC 3 cut(s) 421, 570, 706
Sau96I GGNCC 2 cut(s) 384, 517
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 515, 565
SduI GDGCHC 1 cut(s) 405
SfaNI GCATC 4 cut(s) 15, 550, 664, 784
SfcI CTRYAG 1 cut(s) 996
Sfr274I CTCGAG 1 cut(s) 574
SinI GGWCC 1 cut(s) 517
SlaI CTCGAG 1 cut(s) 574
SmlI CTYRAG 3 cut(s) 31, 574, 854
SmoI CTYRAG 3 cut(s) 31, 574, 854
Sse9I AATT 5 cut(s) 16, 127, 155, 228, 873
SsiI CCGC 4 cut(s) 315, 348, 639, 788
SspMI CTAG 2 cut(s) 297, 555
StyD4I CCNGG 2 cut(s) 513, 563
StyI CCWWGG 3 cut(s) 425, 549, 654
TaaI ACNGT 2 cut(s) 700, 922
TaiI ACGT 2 cut(s) 480, 636
TaqI TCGA 1 cut(s) 575
TasI AATT 5 cut(s) 16, 127, 155, 228, 873
TatI WGTACW 3 cut(s) 331, 594, 700
TauI GCSGC 2 cut(s) 318, 791
TfiI GAWTC 3 cut(s) 270, 620, 947
Tru1I TTAA 3 cut(s) 15, 416, 1085
Tru9I TTAA 3 cut(s) 15, 416, 1085
TscAI CASTG 1 cut(s) 703
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 5 cut(s) 112, 241, 704, 849, 1035
TspRI CASTG 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 517
XapI RAATTY 1 cut(s) 127
XceI RCATGY 1 cut(s) 772
XhoI CTCGAG 1 cut(s) 574
XspI CTAG 2 cut(s) 297, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.