Rh2BG310500
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
36321204 .. 36322115
912 bp
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UTR
Exon/CDS
Intron
Rh2BG310500.1

Sequence Viewer

Length: 318 bp
ATGTTTGATAAGCAGTGGATATTGCATGACTGGAGTGATGAAGAATCTGTGAAAATACTTGAGCGATGTAAAGAGGCAATAACAAGTAATAAGAAGAAAGGCAAGGTGATTATCATAGATATGAATGTGGAAAACCAGAAAGGAGATGACGAATCAATTGAGACACAACTGTTCTTCGACATGTTGATGATGATGATGGCCACCGGAAAAGAAAGGAATGAAAAAGAATGGGCTCAGCTCTTTTCTGATGCAGGTTTCAGTGACTATAAGATAACTCCCATTTTGGGTCTAAGATCACTCATTGAGGTTTATCCTTGA

Protein Analysis

105

Amino Acids

12.31

Weight (kDa)

4.77

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 5 - 87 4.5e-21 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26800 FvH4_6g26810
malus_domestica MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 242
AcoI YGGCCR 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 180
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw26I GTCTC 1 cut(s) 155
AoxI GGCC 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 118
BalI TGGCCA 1 cut(s) 200
BanII GRGCYC 1 cut(s) 235
BccI CCATC 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 242
BlpI GCTNAGC 1 cut(s) 234
BmsI GCATC 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 52
Bpu1102I GCTNAGC 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 35
BshFI GGCC 1 cut(s) 200
BsiSI CCGG 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 1 cut(s) 293
Bsp1720I GCTNAGC 1 cut(s) 234
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 35
BssMI GATC 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 234, 290
BstKTI GATC 1 cut(s) 296
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 184
BsuRI GGCC 1 cut(s) 200
BtgZI GCGATG 1 cut(s) 79
BtsI GCAGTG 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 20, 265
BveI ACCTGC 1 cut(s) 242
CviAII CATG 2 cut(s) 26, 181
CviJI RGCY 3 cut(s) 200, 233, 238
CviKI_1 RGCY 3 cut(s) 200, 233, 238
DdeI CTNAG 2 cut(s) 234, 290
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
EaeI YGGCCR 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 235
FaeI CATG 2 cut(s) 29, 184
FaiI YATR 5 cut(s) 27, 116, 122, 182, 267
FatI CATG 2 cut(s) 25, 180
FriOI GRGCYC 1 cut(s) 235
GsuI CTGGAG 1 cut(s) 52
HaeIII GGCC 1 cut(s) 200
HapII CCGG 1 cut(s) 204
Hin1II CATG 2 cut(s) 29, 184
HinfI GANTC 2 cut(s) 44, 152
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 25, 251
HpyF3I CTNAG 2 cut(s) 234, 290
Hsp92II CATG 2 cut(s) 29, 184
Kzo9I GATC 1 cut(s) 293
LpnPI CCDG 4 cut(s) 16, 149, 217, 237
LweI GCATC 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 260
MalI GATC 1 cut(s) 295
MboI GATC 1 cut(s) 293
MboII GAAGA 3 cut(s) 53, 106, 166
MfeI CAATTG 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 235
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 1 cut(s) 156
MluNI TGGCCA 1 cut(s) 200
MnlI CCTC 2 cut(s) 67, 298
Mox20I TGGCCA 1 cut(s) 200
MscI TGGCCA 1 cut(s) 200
MslI CAYNNNNRTG 2 cut(s) 119, 185
Msp20I TGGCCA 1 cut(s) 200
MspI CCGG 1 cut(s) 204
MunI CAATTG 1 cut(s) 156
NdeII GATC 1 cut(s) 293
NlaIII CATG 2 cut(s) 29, 184
NmuCI GTSAC 1 cut(s) 260
NspI RCATGY 1 cut(s) 184
PciI ACATGT 1 cut(s) 180
PfeI GAWTC 2 cut(s) 44, 152
PscI ACATGT 1 cut(s) 180
RseI CAYNNNNRTG 2 cut(s) 119, 185
Sau3AI GATC 1 cut(s) 293
SduI GDGCHC 1 cut(s) 235
SetI ASST 4 cut(s) 108, 240, 256, 309
SfaNI GCATC 1 cut(s) 238
SgeI CNNG 9 cut(s) 38, 43, 71, 96, 115, 148, 193, 216, 264
SmiMI CAYNNNNRTG 2 cut(s) 119, 185
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 1 cut(s) 156
TaaI ACNGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 177
TasI AATT 1 cut(s) 156
TfiI GAWTC 2 cut(s) 44, 152
TscAI CASTG 2 cut(s) 20, 265
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 3 cut(s) 54, 137, 234
TspRI CASTG 2 cut(s) 20, 265
XceI RCATGY 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.