Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000692

Physical Location & Seq

Genomic Coordinates Reverse (-)

15076421 .. 15077248

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1048300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCCTTTTTGGGAATTGAGTGCTAAGAAACAGACGTTTGGTGACTTGTTCAATGAAGCAATGGAGGCAAACTCCAAACTTATCGCAAGGGTGGCGGTGGAAGAGTGTGGAGGAGTTTTTGAGGGTTCGAAATCCCTGGTTGATGTTGAAGGGGGTACAGGAACAATGGCCAAAGCCATTGCCTATGGATTCCCCAACATCAACTGCACTGTGTTTGACCAGCCACATGTGGTGGCTGACTTGGAAGGGACGGCCCATAATTTGGGTTTTGTGGGAGGAGACATGTTTGATAAAATAGCTCCAGCCAATGCAATTCTGCTCAAGATAAAATACCTCCATCTCATCCTTGATTATTGGAATGATGAAGAAAGCATGAAGATATTGAATAAGTGTAGAGAATCAAAGCTTCTGAGCAAAAATGAAGGAAGGAAGAAGATTATCATCATAGATATAGTTGTGGGGTATAATAAGAAATCAATTGAAACCCAACTCATGTTCGATATGTTGATGATGTCCATCGTCACCAGCAAAGAGCGTAGCAAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0033799 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

183

Amino Acids

20.25

Weight (kDa)

5.96

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_2	PF00891	1 - 181	4.6e-30	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26800 FvH4_6g26810
malus_domestica	MD01G1048000.v1.1 MD01G1048300.v1.1 MD01G1048400.v1.1 MD01G1051800.v1.1 MD01G1051900.v1.1 MD01G1149300.v1.1
prunus_persica	Prupe.3G118900_v2.0.a1 Prupe.3G119100_v2.0.a1 Prupe.3G119700_v2.0.a1 Prupe.3G119800_v2.0.a1 Prupe.3G120200_v2.0.a1 Prupe.3G120400_v2.0.a1 Prupe.3G127600_v2.0.a1 Prupe.3G129000_v2.0.a1 Prupe.3G129200_v2.0.a1 Prupe.3G129400_v2.0.a1 Prupe.3G129600_v2.0.a1 Prupe.3G129800_v2.0.a1 Prupe.4G252900_v2.0.a1 Prupe.4G253200_v2.0.a1 Prupe.4G253300_v2.0.a1
pyrus_communis	pycom01g07360 pycom01g07640 pycom01g07670 pycom01g07720 pycom01g07740 pycom01g07750
rosa_chinensis	RchiOBHm_Chr2g0119291 RchiOBHm_Chr2g0123081 RchiOBHm_Chr2g0123091 RchiOBHm_Chr2g0128091 RchiOBHm_Chr2g0128121 RchiOBHm_Chr2g0128161 RchiOBHm_Chr4g0436611
rosa_laevigata	RLG00000006507 RLG00000006508 RLG00000018994 RLG00000018995
rosa_multiflora	Rmu_co8289337.1_g000001 Rmu_sc0000837.1_g000001 Rmu_sc0003130.1_g000011 Rmu_sc0027975.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115570 Rroxscaffold_2G00115600 Rroxscaffold_2G00116080 Rroxscaffold_2G00116090 Rroxscaffold_5G00377660
rosa_rugosa	Rorug02G0278000 Rorug02G0278000 Rorug02G0278100 Rorug02G0558700 Rorug04G0294700
rosa_samantha	Rh2AG330000 Rh2AG330300 Rh2AG330500 Rh2AG330600 Rh2AG330900 Rh2AG331100 Rh2BG310500 Rh2BG339200 Rh2BG339300 Rh2CG316800 Rh2DG304600 Rh2DG356000 Rh2DG356200 Rh4AG349100 Rh4BG357800 Rh4CG372300 Rh4DG352000 Rh5BG070000
rosa_wichuraiana	Rw2G026730 Rw2G026760 Rw4G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	262
AciI	CCGC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	168
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflIII	ACRYGT	2 cut(s)	226, 282
AgsI	TTSAA	4 cut(s)	52, 149, 385, 482
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	2 cut(s)	299, 406
AluI	AGCT	2 cut(s)	299, 406
Alw26I	GTCTC	1 cut(s)	273
AoxI	GGCC	2 cut(s)	168, 252
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	53, 514
AsuII	TTCGAA	1 cut(s)	128
BalI	TGGCCA	1 cut(s)	170
BccI	CCATC	2 cut(s)	345, 524
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	137
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	305
BsaBI	GATNNNNATC	2 cut(s)	440, 515
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse3DI	GCAATG	2 cut(s)	66, 177
Bse8I	GATNNNNATC	2 cut(s)	440, 515
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	342
BseJI	GATNNNNATC	2 cut(s)	440, 515
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMI	GCAATG	2 cut(s)	66, 177
BseMII	CTCAG	1 cut(s)	401
BseRI	GAGGAG	2 cut(s)	126, 291
BsgI	GTGCAG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	170, 254
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	170, 254
Bsp119I	TTCGAA	1 cut(s)	128
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	2 cut(s)	170, 254
BspCNI	CTCAG	1 cut(s)	402
BspT104I	TTCGAA	1 cut(s)	128
BsrDI	GCAATG	2 cut(s)	66, 177
BssECI	CCNNGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	96
BstBI	TTCGAA	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	24, 410
BstF5I	GGATG	1 cut(s)	342
BstMAI	GTCTC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 92
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	2 cut(s)	230, 286
BstSCI	CCNGG	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	170, 254
BtsCI	GGATG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	4 cut(s)	227, 283, 373, 493
CviJI	RGCY	8 cut(s)	170, 176, 223, 236, 254, 299, 305, 406
CviKI_1	RGCY	8 cut(s)	170, 176, 223, 236, 254, 299, 305, 406
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	2 cut(s)	24, 410
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	135
FaeI	CATG	4 cut(s)	230, 286, 376, 496
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	4 cut(s)	226, 282, 372, 492
FokI	GGATG	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	170, 254
Hin1II	CATG	4 cut(s)	230, 286, 376, 496
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	2 cut(s)	189, 398
HphI	GGTGA	2 cut(s)	53, 514
Hpy188I	TCNGA	1 cut(s)	411
Hpy188III	TCNNGA	1 cut(s)	322
HpyAV	CCTTC	4 cut(s)	143, 239, 416, 420
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	207, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 92
HpyF3I	CTNAG	2 cut(s)	24, 410
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	230, 286, 376, 496
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	6 cut(s)	122, 144, 149, 233, 315, 538
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	41, 520
MboII	GAAGA	5 cut(s)	113, 377, 388, 442, 445
MfeI	CAATTG	1 cut(s)	477
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	4 cut(s)	14, 259, 312, 477
MluNI	TGGCCA	1 cut(s)	170
MnlI	CCTC	5 cut(s)	58, 104, 115, 269, 344
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
Msp20I	TGGCCA	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	65, 92
NlaIII	CATG	4 cut(s)	230, 286, 376, 496
NmuCI	GTSAC	2 cut(s)	41, 520
NspI	RCATGY	2 cut(s)	230, 286
NspV	TTCGAA	1 cut(s)	128
PciI	ACATGT	2 cut(s)	226, 282
PfeI	GAWTC	2 cut(s)	189, 398
PflMI	CCANNNNNTGG	1 cut(s)	262
PscI	ACATGT	2 cut(s)	226, 282
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	253
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
Sau96I	GGNCC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	4 cut(s)	38, 301, 336, 408
SfuI	TTCGAA	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	4 cut(s)	14, 259, 312, 477
SsiI	CCGC	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	128, 498
TasI	AATT	4 cut(s)	14, 259, 312, 477
TfiI	GAWTC	2 cut(s)	189, 398
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	2 cut(s)	41, 520
Tsp45I	GTSAC	2 cut(s)	41, 520
TspDTI	ATGAA	4 cut(s)	69, 378, 389, 435
TspRI	CASTG	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	262
XceI	RCATGY	2 cut(s)	230, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.