Prupe.3G296300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0029109
Physical Location & Seq
Forward (+)
26335983 .. 26336768
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G296300.1

Sequence Viewer

Length: 402 bp
ATGGCACGCCAAGTGATTGTCCTTGCGCTCATCTTTGTTGCCATTTCCGGGGTTTTAGCACAAGAACCAACCTCCCCTTCAGGACCCTCACCGGCCAATGCACCAGCCTTGTCGCCTGACGCTGCCACATCATCATCATCATCAGCTCCTTCTCCCGGCGCCTCTGATGCTGCCGCTGCCACCCCTGCCTCAGCCCCAACCCCTGTTAGCGATATATCTTCGCCACCTGCTCCTTCCCCTGCAGGCGGCGACACCGAGGAAGCTGCCCCCGGAAGCCAGGCCACCGAAGCTGATGAGGCAGCTGCCCCAGAAGGCATTGTCACAGCTGAGGGACCAGTGGACCCTTCATCAGCTGAGGAAGATTATCCCGTCGATGATTTCTCTAGGCTCATCAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

12.82

Weight (kDa)

4.05

Isoelectric Point (pI)

78.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029109)

Species Orthologous Gene IDs
prunus_persica Prupe.3G296300_v2.0.a1
pyrus_communis pycom17g01720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 235
Acc36I ACCTGC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 158
AciI CCGC 2 cut(s) 174, 246
AcoI YGGCCR 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 159
AfiI CCNNNNNNNGG 3 cut(s) 48, 155, 245
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
AluBI AGCT 6 cut(s) 146, 263, 290, 302, 326, 353
AluI AGCT 6 cut(s) 146, 263, 290, 302, 326, 353
AoxI GGCC 2 cut(s) 93, 279
ApeKI GCWGC 6 cut(s) 122, 170, 176, 263, 299, 302
AspLEI GCGC 2 cut(s) 28, 161
AspS9I GGNCC 3 cut(s) 83, 332, 340
AsuC2I CCSGG 3 cut(s) 49, 156, 270
AsuHPI GGTGA 1 cut(s) 81
AvaII GGWCC 3 cut(s) 83, 332, 340
BanI GGYRCC 1 cut(s) 158
BbvCI CCTCAGC 3 cut(s) 190, 327, 354
BbvI GCAGC 6 cut(s) 109, 157, 163, 250, 289, 311
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 1 cut(s) 278
BcnI CCSGG 3 cut(s) 49, 156, 270
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 8 cut(s) 123, 171, 174, 177, 247, 264, 300, 303
BlsI GCNGC 8 cut(s) 124, 172, 175, 178, 248, 265, 301, 304
Bme1390I CCNGG 4 cut(s) 49, 156, 270, 278
Bme18I GGWCC 3 cut(s) 83, 332, 340
BmgT120I GGNCC 3 cut(s) 83, 332, 340
BmiI GGNNCC 4 cut(s) 85, 160, 333, 342
BmrFI CCNGG 4 cut(s) 49, 156, 270, 278
BmsI GCATC 1 cut(s) 157
Bpu10I CCTNAGC 3 cut(s) 190, 327, 354
BpuMI CCSGG 3 cut(s) 49, 156, 270
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 48, 255, 268
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 155, 245
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 335
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 3 cut(s) 48, 255, 268
BseLI CCNNNNNNNGG 3 cut(s) 48, 155, 245
BseMII CTCAG 3 cut(s) 204, 318, 345
BseNI ACTGG 1 cut(s) 335
BseXI GCAGC 6 cut(s) 109, 157, 163, 250, 289, 311
BshFI GGCC 2 cut(s) 95, 281
BshNI GGYRCC 1 cut(s) 158
BsiSI CCGG 4 cut(s) 48, 92, 156, 270
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 3 cut(s) 48, 155, 245
BsmFI GGGAC 1 cut(s) 345
BsnI GGCC 2 cut(s) 95, 281
BspACI CCGC 2 cut(s) 174, 246
BspANI GGCC 2 cut(s) 95, 281
BspCNI CTCAG 3 cut(s) 203, 319, 346
BspLI GGNNCC 4 cut(s) 85, 160, 333, 342
BspMAI CTGCAG 1 cut(s) 244
BspMI ACCTGC 1 cut(s) 235
BspT107I GGYRCC 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 1 cut(s) 335
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 3 cut(s) 48, 255, 268
BssNI GRCGYC 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 278
BstACI GRCGYC 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 7, 244
BstDEI CTNAG 3 cut(s) 190, 327, 354
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 2 cut(s) 28, 161
BstMWI GCNNNNNNNGC 5 cut(s) 167, 176, 185, 287, 296
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 4 cut(s) 47, 154, 268, 276
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 6 cut(s) 109, 157, 163, 250, 289, 311
BsuRI GGCC 2 cut(s) 95, 281
BtsIMutI CAGTG 1 cut(s) 342
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 7, 244
CfoI GCGC 2 cut(s) 28, 161
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 3 cut(s) 83, 332, 340
CseI GACGC 1 cut(s) 128
DdeI CTNAG 3 cut(s) 190, 327, 354
DinI GGCGCC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 93
Eco47I GGWCC 3 cut(s) 83, 332, 340
Eco57I CTGAAG 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 276
EgeI GGCGCC 1 cut(s) 160
EheI GGCGCC 1 cut(s) 160
FaiI YATR 1 cut(s) 215
FaqI GGGAC 1 cut(s) 345
Fnu4HI GCNGC 8 cut(s) 123, 171, 174, 177, 247, 264, 300, 303
Fsp4HI GCNGC 8 cut(s) 123, 171, 174, 177, 247, 264, 300, 303
FspBI CTAG 1 cut(s) 384
GlaI GCGC 2 cut(s) 27, 160
GluI GCNGC 8 cut(s) 123, 171, 174, 177, 247, 264, 300, 303
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 2 cut(s) 95, 281
HapII CCGG 4 cut(s) 48, 92, 156, 270
HgaI GACGC 1 cut(s) 128
HhaI GCGC 2 cut(s) 28, 161
Hin1I GRCGYC 1 cut(s) 159
Hin6I GCGC 2 cut(s) 26, 159
HinP1I GCGC 2 cut(s) 26, 159
HpaII CCGG 4 cut(s) 48, 92, 156, 270
HphI GGTGA 1 cut(s) 81
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 81, 394
Hpy8I GTNNAC 1 cut(s) 340
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 5 cut(s) 87, 159, 243, 305, 354
HpyCH4V TGCA 2 cut(s) 101, 242
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 176, 185, 287, 296
HpyF3I CTNAG 3 cut(s) 190, 327, 354
Hsp92I GRCGYC 1 cut(s) 159
HspAI GCGC 2 cut(s) 26, 159
KasI GGCGCC 1 cut(s) 158
LmnI GCTCC 2 cut(s) 151, 235
Lsp1109I GCAGC 6 cut(s) 109, 157, 163, 250, 289, 311
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 319
MboII GAAGA 2 cut(s) 210, 371
Mly113I GGCGCC 1 cut(s) 159
MnlI CCTC 8 cut(s) 82, 97, 172, 199, 250, 289, 322, 349
MspA1I CMGCKG 4 cut(s) 176, 302, 326, 353
MspI CCGG 4 cut(s) 48, 92, 156, 270
MspR9I CCNGG 4 cut(s) 49, 156, 270, 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 5 cut(s) 167, 176, 185, 287, 296
NarI GGCGCC 1 cut(s) 159
NciI CCSGG 3 cut(s) 49, 156, 270
NlaIV GGNNCC 4 cut(s) 85, 160, 333, 342
NmuCI GTSAC 1 cut(s) 319
PaqCI CACCTGC 1 cut(s) 235
PkrI GCNGC 8 cut(s) 124, 172, 175, 178, 248, 265, 301, 304
PluTI GGCGCC 1 cut(s) 162
PpuMI RGGWCCY 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 4 cut(s) 85, 160, 333, 342
PspPI GGNCC 3 cut(s) 83, 332, 340
PspPPI RGGWCCY 1 cut(s) 83
PstI CTGCAG 1 cut(s) 244
PvuII CAGCTG 3 cut(s) 302, 326, 353
SatI GCNGC 8 cut(s) 123, 171, 174, 177, 247, 264, 300, 303
Sau96I GGNCC 3 cut(s) 83, 332, 340
SbfI CCTGCAGG 1 cut(s) 244
ScrFI CCNGG 4 cut(s) 49, 156, 270, 278
SdaI CCTGCAGG 1 cut(s) 244
SetI ASST 8 cut(s) 74, 148, 229, 265, 292, 304, 328, 355
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 240
SfoI GGCGCC 1 cut(s) 160
SinI GGWCC 3 cut(s) 83, 332, 340
Sse8387I CCTGCAGG 1 cut(s) 244
SsiI CCGC 2 cut(s) 174, 246
SspDI GGCGCC 1 cut(s) 158
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 4 cut(s) 47, 154, 268, 276
TaqI TCGA 1 cut(s) 372
TauI GCSGC 2 cut(s) 176, 249
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 6 cut(s) 122, 170, 176, 263, 299, 302
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 336
TspRI CASTG 1 cut(s) 342
VpaK11BI GGWCC 3 cut(s) 83, 332, 340
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.