pycom17g01720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0029109
Physical Location & Seq
Reverse (-)
1113025 .. 1113405
381 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01720.1

Sequence Viewer

Length: 381 bp
ATGGGACGTCAAGTCATTGTTCTTGCCCTAGTATTTGTAGCCATTACTGGTGTTTTAGCACAAGAACCAATCGCATCACCACCCGCCCCCTCCCCGGCCTCCTCCCCTGACGCCACCACGTCACCATCACCTTCCAGCTCGTCAGCTCCTTCTCCCAGTGGTGGTGACGCCAGCACTCCGGCCTCAGCCCCAAGCCCCGCTAACGATGTATCATCCGCTCCTTCTCCCCACAGCGGCGATGCAGCTGCTCCTGGAAGCATGGCCACCGATGAGACGCTTGAGATCGCGGCTGCCCCAGAAGGCGAGGCCGCAGCTGCGAGACCCTTGGACGCTGAGGAGGATTATCCCACTGATGATCTCTCAAGGCTCATAAAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

12.26

Weight (kDa)

4.05

Isoelectric Point (pI)

86.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029109)

Species Orthologous Gene IDs
prunus_persica Prupe.3G296300_v2.0.a1
pyrus_communis pycom17g01720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 10
AccBSI CCGCTC 1 cut(s) 218
AccII CGCG 1 cut(s) 287
AciI CCGC 6 cut(s) 84, 198, 216, 234, 287, 309
AcoI YGGCCR 1 cut(s) 261
AcyI GRCGYC 3 cut(s) 7, 111, 168
AfiI CCNNNNNNNGG 3 cut(s) 94, 161, 233
AhdI GACNNNNNGTC 1 cut(s) 11
AjiI CACGTC 1 cut(s) 120
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 4 cut(s) 138, 146, 245, 314
AluI AGCT 4 cut(s) 138, 146, 245, 314
Alw26I GTCTC 2 cut(s) 266, 313
AoxI GGCC 4 cut(s) 96, 180, 261, 306
ApeKI GCWGC 5 cut(s) 242, 245, 290, 311, 314
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 4 cut(s) 69, 114, 120, 176
BalI TGGCCA 1 cut(s) 263
BbvCI CCTCAGC 2 cut(s) 184, 333
BbvI GCAGC 5 cut(s) 232, 254, 277, 301, 323
BccI CCATC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 2 cut(s) 266, 313
BfaI CTAG 1 cut(s) 29
BisI GCNGC 8 cut(s) 235, 243, 246, 288, 291, 309, 312, 315
BlsI GCNGC 8 cut(s) 236, 244, 247, 289, 292, 310, 313, 316
Bme1390I CCNGG 2 cut(s) 95, 252
BmeRI GACNNNNNGTC 1 cut(s) 11
BmgBI CACGTC 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 95, 252
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 2 cut(s) 83, 229
BmuI ACTGGG 1 cut(s) 150
Bpu10I CCTNAGC 2 cut(s) 184, 333
BpuEI CTTGAG 2 cut(s) 299, 346
BpuMI CCSGG 1 cut(s) 95
BsaHI GRCGYC 3 cut(s) 7, 111, 168
BsaI GGTCTC 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 93, 324
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 161, 233
Bse1I ACTGG 2 cut(s) 52, 156
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 93, 324
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 3 cut(s) 94, 161, 233
BseMII CTCAG 2 cut(s) 198, 324
BseNI ACTGG 2 cut(s) 52, 156
BseRI GAGGAG 2 cut(s) 91, 350
BseXI GCAGC 5 cut(s) 232, 254, 277, 301, 323
Bsh1236I CGCG 1 cut(s) 287
BshFI GGCC 4 cut(s) 98, 182, 263, 308
BsiSI CCGG 2 cut(s) 95, 179
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 94, 161, 233
BsmAI GTCTC 2 cut(s) 266, 313
BsmBI CGTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 4 cut(s) 98, 182, 263, 308
Bso31I GGTCTC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 282, 355
BspACI CCGC 6 cut(s) 84, 198, 216, 234, 287, 309
BspANI GGCC 4 cut(s) 98, 182, 263, 308
BspCNI CTCAG 2 cut(s) 197, 325
BspFNI CGCG 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 313
BsrBI CCGCTC 1 cut(s) 218
BsrI ACTGG 2 cut(s) 52, 156
BssECI CCNNGG 2 cut(s) 93, 324
BssMI GATC 2 cut(s) 282, 355
BssNI GRCGYC 3 cut(s) 7, 111, 168
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 252
BstACI GRCGYC 3 cut(s) 7, 111, 168
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 2 cut(s) 184, 333
BstF5I GGATG 1 cut(s) 212
BstFNI CGCG 1 cut(s) 287
BstKTI GATC 2 cut(s) 285, 358
BstMAI GTCTC 2 cut(s) 266, 313
BstMBI GATC 2 cut(s) 282, 355
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 93, 250
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 5 cut(s) 232, 254, 277, 301, 323
BsuRI GGCC 4 cut(s) 98, 182, 263, 308
BtgZI GCGATG 1 cut(s) 252
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 1 cut(s) 212
BtsIMutI CAGTG 2 cut(s) 163, 348
Cac8I GCNNGC 1 cut(s) 172
CseI GACGC 4 cut(s) 119, 176, 283, 338
CviAII CATG 1 cut(s) 259
DdeI CTNAG 2 cut(s) 184, 333
DpnI GATC 2 cut(s) 284, 357
DpnII GATC 2 cut(s) 282, 355
DriI GACNNNNNGTC 1 cut(s) 11
EaeI YGGCCR 1 cut(s) 261
Eam1105I GACNNNNNGTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 266
FaeI CATG 1 cut(s) 262
FaiI YATR 2 cut(s) 260, 371
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 258
FauI CCCGC 2 cut(s) 91, 205
Fnu4HI GCNGC 8 cut(s) 235, 243, 246, 288, 291, 309, 312, 315
FokI GGATG 1 cut(s) 199
Fsp4HI GCNGC 8 cut(s) 235, 243, 246, 288, 291, 309, 312, 315
FspBI CTAG 1 cut(s) 29
GluI GCNGC 8 cut(s) 235, 243, 246, 288, 291, 309, 312, 315
HaeIII GGCC 4 cut(s) 98, 182, 263, 308
HapII CCGG 2 cut(s) 95, 179
HgaI GACGC 4 cut(s) 119, 176, 283, 338
Hin1I GRCGYC 3 cut(s) 7, 111, 168
Hin1II CATG 1 cut(s) 262
HpaII CCGG 2 cut(s) 95, 179
HphI GGTGA 4 cut(s) 69, 114, 120, 176
HpyAV CCTTC 4 cut(s) 141, 159, 231, 293
HpyCH4IV ACGT 2 cut(s) 7, 119
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 2 cut(s) 184, 333
HpySE526I ACGT 2 cut(s) 7, 119
Hsp92I GRCGYC 3 cut(s) 7, 111, 168
Hsp92II CATG 1 cut(s) 262
Kzo9I GATC 2 cut(s) 282, 355
LmnI GCTCC 3 cut(s) 151, 223, 253
Lsp1109I GCAGC 5 cut(s) 232, 254, 277, 301, 323
LweI GCATC 2 cut(s) 83, 229
MaeI CTAG 1 cut(s) 29
MaeII ACGT 2 cut(s) 7, 119
MaeIII GTNAC 2 cut(s) 120, 164
MalI GATC 2 cut(s) 284, 357
MbiI CCGCTC 1 cut(s) 218
MboI GATC 2 cut(s) 282, 355
MlsI TGGCCA 1 cut(s) 263
MluNI TGGCCA 1 cut(s) 263
MnlI CCTC 7 cut(s) 100, 109, 112, 193, 298, 328, 331
Mox20I TGGCCA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 263
MspA1I CMGCKG 3 cut(s) 234, 245, 314
MspI CCGG 2 cut(s) 95, 179
MspR9I CCNGG 2 cut(s) 95, 252
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 314
NciI CCSGG 1 cut(s) 95
NdeII GATC 2 cut(s) 282, 355
NlaIII CATG 1 cut(s) 262
NmuCI GTSAC 2 cut(s) 120, 164
PfoI TCCNGGA 1 cut(s) 250
PkrI GCNGC 8 cut(s) 236, 244, 247, 289, 292, 310, 313, 316
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PvuII CAGCTG 2 cut(s) 245, 314
SatI GCNGC 8 cut(s) 235, 243, 246, 288, 291, 309, 312, 315
Sau3AI GATC 2 cut(s) 282, 355
ScrFI CCNGG 2 cut(s) 95, 252
SetI ASST 7 cut(s) 10, 122, 133, 140, 148, 247, 316
SfaNI GCATC 2 cut(s) 83, 229
SmlI CTYRAG 2 cut(s) 278, 361
SmoI CTYRAG 2 cut(s) 278, 361
SsiI CCGC 6 cut(s) 84, 198, 216, 234, 287, 309
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 93, 250
StyI CCWWGG 1 cut(s) 324
TaiI ACGT 2 cut(s) 10, 122
TauI GCSGC 3 cut(s) 237, 290, 311
TscAI CASTG 2 cut(s) 163, 355
TseFI GTSAC 2 cut(s) 120, 164
TseI GCWGC 5 cut(s) 242, 245, 290, 311, 314
Tsp45I GTSAC 2 cut(s) 120, 164
TspRI CASTG 2 cut(s) 163, 355
XspI CTAG 1 cut(s) 29
ZraI GACGTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.