Prupe.3G305000_v2.0.a1

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0022000
Physical Location & Seq
Forward (+)
26740455 .. 26742015
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G305000.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 996 bp
ATGGGATCTCCAATGTCCCTCCGTCGACTGAGAGATATGAAACAATCTCGGTATCTTCCTCTAATAGCTTTTTCAGCTCTAGTGCTCCTATGCATACTTTTGAAAAATTCTTCTCAACCAATTGCAACCACCCACGACGTATCGCTTCTCAATTTTCAAACGAACCCAGAAAGCGCAGAGTTGGTGGAAGTTTTGAGGAGAGCATCGATGGCAGACAGAACGATCATACTTACCATTGTTGAGGAAGCCTGGACTGGTCCTGGCTCTGTTCTTGATCTCTTCCTAGAGAGCTTTCGGATTGGCCAAGAGACCAAATGGCTCTTGAATCACTTGATCATTGTCACTGTAGGCAGGCAAGCATTTCAGTACTGCAAGTCCCTGCATCCCCATTGCTTCCAGCTCACACCAATTGGAGTATCGAAACCTCCTACCGGAGAGCAACTTCACAAGCACAGTCGGGATAGACATGACCTGCTACATAAAGTGCTTCAACTAGGCTACAATCTTGTTTTCACAGAGGTGGATGTTATGTGGTTCAGAAACCCAATACCACACTTCAACCCCCAAGATGAAGTCACAATTCCATGCGATCTCGAACTGAAATATGGAAGCAATAAACAGGATAGGGGGCTCTTTTATGTGAAATCAAATGATATATCAGTCGAATTCTTCAACTACTTGAAATTGGTCGGGGTCCTATACCCCAACACTCCTTTTGAATCTCTCTGTGAGATTGCAACAGATCAGGAGATTATGGAAATGCATGGAATGCGCATAAAATTTCTTGATAAAGCTTATTTTGGTGGATTTTGTCAGCCACTTAAGAACAATAGTGAAGTTTATACCATGCAAGCAAACTGCTGTGAAAAGATTGAAAGTAAGGTCCATGATCTAAAGCTTGTCCTAGATGATTGGAACAACTTCACAGGACAATCATCAAATAATAGCTTGGGGACATTGTCTTCATGGCGAGCCCCAGACAAATGCATCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

332

Amino Acids

37.88

Weight (kDa)

6.41

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40900
malus_domestica MD17G1012700.v1.1
prunus_persica Prupe.3G305000_v2.0.a1 Prupe.3G305000_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 773
Acc36I ACCTGC 1 cut(s) 480
AccI GTMKAC 1 cut(s) 25
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 3 cut(s) 106, 665, 779
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 431
AflII CTTAAG 1 cut(s) 821
AgsI TTSAA 9 cut(s) 103, 158, 325, 491, 559, 673, 682, 719, 875
AjnI CCWGG 2 cut(s) 248, 259
AleI CACNNNNGTG 1 cut(s) 518
AluBI AGCT 7 cut(s) 68, 77, 291, 400, 794, 898, 948
AluI AGCT 7 cut(s) 68, 77, 291, 400, 794, 898, 948
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 1 cut(s) 13
AoxI GGCC 1 cut(s) 301
ApoI RAATTY 3 cut(s) 106, 665, 779
Asp700I GAANNNNTTC 1 cut(s) 920
AspLEI GCGC 2 cut(s) 176, 774
AspS9I GGNCC 3 cut(s) 257, 694, 883
AvaII GGWCC 3 cut(s) 257, 694, 883
BalI TGGCCA 1 cut(s) 303
BanII GRGCYC 2 cut(s) 633, 976
BbsI GAAGAC 1 cut(s) 954
Bbv12I GWGCWC 1 cut(s) 87
BccI CCATC 1 cut(s) 202
BciT130I CCWGG 2 cut(s) 250, 261
BclI TGATCA 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 4 cut(s) 80, 284, 494, 905
BfmI CTRYAG 1 cut(s) 345
BfrI CTTAAG 1 cut(s) 821
BfuAI ACCTGC 1 cut(s) 480
BmcAI AGTACT 1 cut(s) 368
Bme1390I CCNGG 2 cut(s) 250, 261
Bme18I GGWCC 3 cut(s) 257, 694, 883
BmgT120I GGNCC 3 cut(s) 257, 694, 883
BmiI GGNNCC 1 cut(s) 695
BmrFI CCNGG 2 cut(s) 250, 261
BmsI GCATC 2 cut(s) 212, 391
BpiI GAAGAC 1 cut(s) 954
Bsa29I ATCGAT 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 302
BsaWI WCCGGW 1 cut(s) 431
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 388
BseBI CCWGG 2 cut(s) 250, 261
BseCI ATCGAT 1 cut(s) 206
BseGI GGATG 3 cut(s) 382, 529, 987
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 211
BshFI GGCC 1 cut(s) 303
BshVI ATCGAT 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 432
BslFI GGGAC 2 cut(s) 361, 967
BslI CCNNNNNNNGG 1 cut(s) 431
BsmAI GTCTC 1 cut(s) 302
BsmFI GGGAC 2 cut(s) 361, 967
BsmI GAATGC 1 cut(s) 774
BsnI GGCC 1 cut(s) 303
Bso31I GGTCTC 1 cut(s) 302
Bsp1286I GDGCHC 3 cut(s) 87, 633, 976
Bsp143I GATC 7 cut(s) 5, 222, 274, 333, 589, 742, 889
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 21
BspDI ATCGAT 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 695
BspMI ACCTGC 1 cut(s) 480
BspPI GGATC 1 cut(s) 13
BspTI CTTAAG 1 cut(s) 821
BspTNI GGTCTC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 388
BsrI ACTGG 1 cut(s) 259
BssMI GATC 7 cut(s) 5, 222, 274, 333, 589, 742, 889
Bst2UI CCWGG 2 cut(s) 250, 261
Bst4CI ACNGT 2 cut(s) 346, 455
Bst6I CTCTTC 1 cut(s) 284
BstAFI CTTAAG 1 cut(s) 821
BstAPI GCANNNNNTGC 1 cut(s) 769
BstC8I GCNNGC 4 cut(s) 353, 357, 852, 972
BstDEI CTNAG 1 cut(s) 29
BstF5I GGATG 3 cut(s) 382, 529, 987
BstHHI GCGC 2 cut(s) 176, 774
BstKTI GATC 7 cut(s) 8, 225, 277, 336, 592, 745, 892
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 7 cut(s) 5, 222, 274, 333, 589, 742, 889
BstMWI GCNNNNNNNGC 3 cut(s) 74, 209, 769
BstNI CCWGG 2 cut(s) 250, 261
BstSCI CCNGG 2 cut(s) 248, 259
BstSFI CTRYAG 1 cut(s) 345
BstV2I GAAGAC 1 cut(s) 954
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
Bsu15I ATCGAT 1 cut(s) 206
BsuRI GGCC 1 cut(s) 303
BsuTUI ATCGAT 1 cut(s) 206
BtsCI GGATG 3 cut(s) 382, 529, 987
BtsIMutI CAGTG 1 cut(s) 342
BveI ACCTGC 1 cut(s) 480
Cac8I GCNNGC 4 cut(s) 353, 357, 852, 972
CfoI GCGC 2 cut(s) 176, 774
Cfr13I GGNCC 3 cut(s) 257, 694, 883
ClaI ATCGAT 1 cut(s) 206
Csp6I GTAC 1 cut(s) 367
CviAII CATG 6 cut(s) 467, 585, 764, 847, 887, 966
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 1 cut(s) 29
DpnI GATC 7 cut(s) 7, 224, 276, 335, 591, 744, 891
DpnII GATC 7 cut(s) 5, 222, 274, 333, 589, 742, 889
EaeI YGGCCR 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Eco24I GRGCYC 2 cut(s) 633, 976
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 3 cut(s) 257, 694, 883
EcoO109I RGGNCCY 1 cut(s) 694
EcoRI GAATTC 1 cut(s) 665
EcoRII CCWGG 2 cut(s) 248, 259
EcoT22I ATGCAT 3 cut(s) 95, 765, 989
EcoT38I GRGCYC 2 cut(s) 633, 976
FaeI CATG 6 cut(s) 470, 588, 767, 850, 890, 969
FaqI GGGAC 2 cut(s) 361, 967
FatI CATG 6 cut(s) 466, 584, 763, 846, 886, 965
FbaI TGATCA 1 cut(s) 333
FblI GTMKAC 1 cut(s) 25
FokI GGATG 3 cut(s) 369, 536, 974
FriOI GRGCYC 2 cut(s) 633, 976
FspAI RTGCGCAY 1 cut(s) 773
FspBI CTAG 4 cut(s) 80, 284, 494, 905
FspI TGCGCA 1 cut(s) 773
GlaI GCGC 2 cut(s) 175, 773
HaeIII GGCC 1 cut(s) 303
HapII CCGG 1 cut(s) 432
HhaI GCGC 2 cut(s) 176, 774
Hin1II CATG 6 cut(s) 470, 588, 767, 850, 890, 969
Hin6I GCGC 2 cut(s) 174, 772
HinP1I GCGC 2 cut(s) 174, 772
HincII GTYRAC 1 cut(s) 26
HindII GTYRAC 1 cut(s) 26
HindIII AAGCTT 2 cut(s) 792, 896
HinfI GANTC 2 cut(s) 325, 719
HpaII CCGG 1 cut(s) 432
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 2 cut(s) 297, 539
Hpy188III TCNNGA 6 cut(s) 272, 322, 458, 593, 746, 785
Hpy8I GTNNAC 1 cut(s) 26
Hpy99I CGWCG 2 cut(s) 27, 140
HpyCH4III ACNGT 2 cut(s) 346, 455
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 8 cut(s) 93, 125, 372, 382, 737, 763, 850, 987
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 209, 769
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 6 cut(s) 470, 588, 767, 850, 890, 969
HspAI GCGC 2 cut(s) 174, 772
Ksp22I TGATCA 1 cut(s) 333
Kzo9I GATC 7 cut(s) 5, 222, 274, 333, 589, 742, 889
LmnI GCTCC 1 cut(s) 90
LweI GCATC 2 cut(s) 212, 391
MaeI CTAG 4 cut(s) 80, 284, 494, 905
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 340, 574
MalI GATC 7 cut(s) 7, 224, 276, 335, 591, 744, 891
MboI GATC 7 cut(s) 5, 222, 274, 333, 589, 742, 889
MboII GAAGA 5 cut(s) 47, 102, 271, 661, 954
MfeI CAATTG 2 cut(s) 120, 408
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 3 cut(s) 87, 633, 976
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 8 cut(s) 106, 120, 151, 408, 579, 665, 683, 779
MluNI TGGCCA 1 cut(s) 303
MnlI CCTC 6 cut(s) 29, 69, 189, 235, 435, 511
Mox20I TGGCCA 1 cut(s) 303
Mph1103I ATGCAT 3 cut(s) 95, 765, 989
MroXI GAANNNNTTC 1 cut(s) 920
MscI TGGCCA 1 cut(s) 303
MseI TTAA 1 cut(s) 822
MslI CAYNNNNRTG 1 cut(s) 518
Msp20I TGGCCA 1 cut(s) 303
MspCI CTTAAG 1 cut(s) 821
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 2 cut(s) 250, 261
MunI CAATTG 2 cut(s) 120, 408
Mva1269I GAATGC 1 cut(s) 774
MvaI CCWGG 2 cut(s) 250, 261
MwoI GCNNNNNNNGC 3 cut(s) 74, 209, 769
NdeII GATC 7 cut(s) 5, 222, 274, 333, 589, 742, 889
NlaIII CATG 6 cut(s) 470, 588, 767, 850, 890, 969
NlaIV GGNNCC 1 cut(s) 695
NmuCI GTSAC 2 cut(s) 340, 574
NsbI TGCGCA 1 cut(s) 773
NsiI ATGCAT 3 cut(s) 95, 765, 989
OliI CACNNNNGTG 1 cut(s) 518
PctI GAATGC 1 cut(s) 774
PdmI GAANNNNTTC 1 cut(s) 920
PfeI GAWTC 2 cut(s) 325, 719
PflFI GACNNNGTC 1 cut(s) 958
PpuMI RGGWCCY 1 cut(s) 694
Psp5II RGGWCCY 1 cut(s) 694
Psp6I CCWGG 2 cut(s) 248, 259
PspGI CCWGG 2 cut(s) 248, 259
PspN4I GGNNCC 1 cut(s) 695
PspPI GGNCC 3 cut(s) 257, 694, 883
PspPPI RGGWCCY 1 cut(s) 694
PsuI RGATCY 1 cut(s) 5
PsyI GACNNNGTC 1 cut(s) 958
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 518
SalI GTCGAC 1 cut(s) 24
SaqAI TTAA 1 cut(s) 822
Sau3AI GATC 7 cut(s) 5, 222, 274, 333, 589, 742, 889
Sau96I GGNCC 3 cut(s) 257, 694, 883
ScaI AGTACT 1 cut(s) 368
ScrFI CCNGG 2 cut(s) 250, 261
SduI GDGCHC 3 cut(s) 87, 633, 976
SfaNI GCATC 2 cut(s) 212, 391
SfcI CTRYAG 1 cut(s) 345
SinI GGWCC 3 cut(s) 257, 694, 883
SmiMI CAYNNNNRTG 1 cut(s) 518
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
Sse9I AATT 8 cut(s) 106, 120, 151, 408, 579, 665, 683, 779
SspMI CTAG 4 cut(s) 80, 284, 494, 905
StyD4I CCNGG 2 cut(s) 248, 259
TaaI ACNGT 2 cut(s) 346, 455
TaiI ACGT 1 cut(s) 141
TaqI TCGA 5 cut(s) 25, 206, 419, 594, 663
TasI AATT 8 cut(s) 106, 120, 151, 408, 579, 665, 683, 779
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 2 cut(s) 325, 719
Tru1I TTAA 1 cut(s) 822
Tru9I TTAA 1 cut(s) 822
TscAI CASTG 1 cut(s) 349
TseFI GTSAC 2 cut(s) 340, 574
Tsp45I GTSAC 2 cut(s) 340, 574
TspDTI ATGAA 3 cut(s) 53, 585, 954
TspGWI ACGGA 1 cut(s) 11
TspRI CASTG 1 cut(s) 349
Tth111I GACNNNGTC 1 cut(s) 958
Vha464I CTTAAG 1 cut(s) 821
VpaK11BI GGWCC 3 cut(s) 257, 694, 883
XapI RAATTY 3 cut(s) 106, 665, 779
XmiI GTMKAC 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 920
XspI CTAG 4 cut(s) 80, 284, 494, 905
ZrmI AGTACT 1 cut(s) 368
Zsp2I ATGCAT 3 cut(s) 95, 765, 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.