Prupe.4G012200_v2.0.a1

Protein present in Fab1, YOTB, Vac1, and EEA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0022480
Physical Location & Seq
Reverse (-)
584007 .. 585140
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G012200.2

Sequence Viewer

Length: 393 bp
ATGTTGGAGAAGATAGGGTTGCCGGCAAAGCCATCACTGAGAGGGAATACTTGGGTTGTTGACGCCTCACACAGTCAGGGATGTACTTCTCAGTTCACCTTCATCAATCGCAAGCATCATTGCCGGAGGCGTGGGGGCTTGTTTTGCAACAGCTGCACCCGGCAAAAAATGTTTTTACGCGGGCAAGGTGATTCACCTGTGCGGATTTGTGAGCCTTGTGAAAAGCTAGAAGAAGCAGCACGCTTTGAGGGACATGGCCACAAGACTAGAGCTGGGAGAGGCAGTTTGAAGTTGACATCAAAGCCTGAGGATGAAGTTCTGAACCAAATTCTCGGTAATGATAGGAAGGAATCAGGACAAGAGCCTAACAGTAATGTGGTTGCTAGTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006897 GO:0007034 GO:0007049 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009057 GO:0009653 GO:0009987 GO:0010927 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030163 GO:0030435 GO:0030437 GO:0031090 GO:0031321 GO:0031410 GO:0031982 GO:0032266 GO:0032502 GO:0032505 GO:0032509 GO:0032511 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0033565 GO:0034293 GO:0034613 GO:0035091 GO:0036211 GO:0036452 GO:0042763 GO:0042764 GO:0042886 GO:0043162 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043328 GO:0043412 GO:0043632 GO:0043934 GO:0043935 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045184 GO:0045324 GO:0046907 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051321 GO:0051603 GO:0051641 GO:0051649 GO:0051704 GO:0061659 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0120113 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901981 GO:1903046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYVE

Protein Analysis

131

Amino Acids

14.46

Weight (kDa)

9.38

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022480)

Species Orthologous Gene IDs
prunus_persica Prupe.4G012200_v2.0.a1 Prupe.4G012200_v2.0.a1
rosa_multiflora Rmu_sc0028881.1_g000001 Rmu_sc0040974.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 180
AciI CCGC 2 cut(s) 180, 202
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 1 cut(s) 85
AgsI TTSAA 1 cut(s) 289
AluBI AGCT 3 cut(s) 153, 226, 272
AluI AGCT 3 cut(s) 153, 226, 272
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 2 cut(s) 153, 236
ApoI RAATTY 1 cut(s) 327
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 3 cut(s) 88, 186, 200
AxyI CCTNAGG 1 cut(s) 306
BalI TGGCCA 1 cut(s) 258
BbvI GCAGC 2 cut(s) 140, 248
BccI CCATC 1 cut(s) 40
BcnI CCSGG 1 cut(s) 160
BfaI CTAG 3 cut(s) 227, 267, 384
BisI GCNGC 2 cut(s) 154, 237
BlsI GCNGC 2 cut(s) 155, 238
Bme1390I CCNGG 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 124
BpuMI CCSGG 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bse118I RCCGGY 1 cut(s) 22
Bse21I CCTNAGG 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 118
BseGI GGATG 2 cut(s) 86, 316
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 3 cut(s) 29, 104, 297
BseXI GCAGC 2 cut(s) 140, 248
BseYI CCCAGC 1 cut(s) 272
BsgI GTGCAG 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 258
BsiSI CCGG 3 cut(s) 23, 124, 160
BslFI GGGAC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 264
BsnI GGCC 1 cut(s) 258
BspACI CCGC 2 cut(s) 180, 202
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 3 cut(s) 30, 103, 298
BspFNI CGCG 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 22
BssNI GRCGYC 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 74, 371
BstACI GRCGYC 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 153
BstC8I GCNNGC 4 cut(s) 24, 113, 182, 241
BstDEI CTNAG 3 cut(s) 38, 90, 306
BstF5I GGATG 2 cut(s) 86, 316
BstFNI CGCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 3 cut(s) 28, 144, 153
BstSCI CCNGG 1 cut(s) 158
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 140, 248
Bsu36I CCTNAGG 1 cut(s) 306
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 2 cut(s) 86, 316
BtsIMutI CAGTG 1 cut(s) 35
Cac8I GCNNGC 4 cut(s) 24, 113, 182, 241
Cfr10I RCCGGY 1 cut(s) 22
CseI GACGC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 84
CviAII CATG 1 cut(s) 254
CviJI RGCY 9 cut(s) 31, 138, 153, 214, 226, 258, 272, 304, 364
CviKI_1 RGCY 9 cut(s) 31, 138, 153, 214, 226, 258, 272, 304, 364
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 3 cut(s) 38, 90, 306
EaeI YGGCCR 1 cut(s) 256
Eco81I CCTNAGG 1 cut(s) 306
FaeI CATG 1 cut(s) 257
FaiI YATR 1 cut(s) 255
FaqI GGGAC 1 cut(s) 264
FatI CATG 1 cut(s) 253
FauI CCCGC 1 cut(s) 173
Fnu4HI GCNGC 2 cut(s) 154, 237
FokI GGATG 2 cut(s) 93, 323
Fsp4HI GCNGC 2 cut(s) 154, 237
FspBI CTAG 3 cut(s) 227, 267, 384
GluI GCNGC 2 cut(s) 154, 237
GsaI CCCAGC 1 cut(s) 276
HaeIII GGCC 1 cut(s) 258
HapII CCGG 3 cut(s) 23, 124, 160
HgaI GACGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 1 cut(s) 257
HincII GTYRAC 2 cut(s) 61, 294
HindII GTYRAC 2 cut(s) 61, 294
HinfI GANTC 2 cut(s) 191, 350
HpaII CCGG 3 cut(s) 23, 124, 160
HphI GGTGA 3 cut(s) 88, 186, 200
Hpy166II GTNNAC 3 cut(s) 61, 96, 294
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 1 cut(s) 354
Hpy8I GTNNAC 3 cut(s) 61, 96, 294
HpyAV CCTTC 2 cut(s) 109, 340
HpyCH4III ACNGT 2 cut(s) 74, 371
HpyCH4V TGCA 2 cut(s) 147, 156
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 144, 153
HpyF3I CTNAG 3 cut(s) 38, 90, 306
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 1 cut(s) 257
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
LpnPI CCDG 8 cut(s) 36, 62, 137, 173, 210, 258, 318, 339
Lsp1109I GCAGC 2 cut(s) 140, 248
LweI GCATC 1 cut(s) 124
MaeI CTAG 3 cut(s) 227, 267, 384
MboII GAAGA 2 cut(s) 22, 242
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 1 cut(s) 327
MluNI TGGCCA 1 cut(s) 258
MnlI CCTC 6 cut(s) 35, 76, 120, 241, 272, 301
Mox20I TGGCCA 1 cut(s) 258
MroNI GCCGGC 1 cut(s) 22
MscI TGGCCA 1 cut(s) 258
Msp20I TGGCCA 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 153
MspI CCGG 3 cut(s) 23, 124, 160
MspR9I CCNGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 28, 144, 153
NaeI GCCGGC 1 cut(s) 24
NciI CCSGG 1 cut(s) 160
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 1 cut(s) 257
PdiI GCCGGC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 191, 350
PkrI GCNGC 2 cut(s) 155, 238
PspFI CCCAGC 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 153
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SatI GCNGC 2 cut(s) 154, 237
ScrFI CCNGG 1 cut(s) 160
SetI ASST 6 cut(s) 101, 155, 190, 199, 228, 274
SfaNI GCATC 1 cut(s) 124
Sse9I AATT 1 cut(s) 327
SsiI CCGC 2 cut(s) 180, 202
SspMI CTAG 3 cut(s) 227, 267, 384
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 2 cut(s) 74, 371
TasI AATT 1 cut(s) 327
TatI WGTACW 1 cut(s) 83
TfiI GAWTC 2 cut(s) 191, 350
TscAI CASTG 1 cut(s) 42
TseI GCWGC 2 cut(s) 153, 236
TspDTI ATGAA 2 cut(s) 91, 327
TspRI CASTG 1 cut(s) 42
XapI RAATTY 1 cut(s) 327
XspI CTAG 3 cut(s) 227, 267, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.