Prupe.4G056900_v2.0.a1

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
2729829 .. 2730440
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G056900.1

Sequence Viewer

Length: 612 bp
ATGGGGGCCACCAGTTCATTCATTCGATTTGGTGCAGACATAGAGCAAAGGCCCGACCTAAGCGTGACAGAATTAAAGAGAAACAACAACATTGTACTATACTACATAAACTTAATAGGAATAAGTGTCAACGGCTACATGCTCAACATACCAGAGCAAGAATTTGAAATTAAAAAAGATGGAAGTGGAGGCAGCATAATTGATTCTGGTGCTGCATTTAGTCACATTAGACGGGCAGCTCATGACAGTTTACTCAGAGCTTTAGAAGCTGTCCTTGCAGGATATGGGGACACAGTGAAAAGGGTGCCAAGTGGGGATGTACCTTTTGAGCTTTGGTATGAGGTGTTGAAGCAAGAAGCCTTTCAAGGCTTCCCAGTGATCACATTCCATCTCCAAAACAGTGCTGACATTATCTTGGATGCTGAATCTGCTTTTCTTATTGGAAAAGGTACTTCTGGAAATATGCAATTCTATTTGGCTATTATTTCTGAAAATGATCCTAGAGGTCTAAATGCTATCGGAGCATACCAGCAGACAAATTACCGTTTCATCTACGACACAAAAAGCTACAAGCTGTTTTTTGGTGCAGAGGATTGCTTTCGTAGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

204

Amino Acids

22.57

Weight (kDa)

5.08

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028809)

Species Orthologous Gene IDs
malus_domestica MD05G1305300.v1.1
prunus_persica Prupe.4G056900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 304
AclWI GGATC 1 cut(s) 491
AcsI RAATTY 1 cut(s) 161
AfaI GTAC 3 cut(s) 96, 321, 451
AgsI TTSAA 3 cut(s) 167, 349, 365
AluBI AGCT 6 cut(s) 239, 260, 269, 331, 567, 574
AluI AGCT 6 cut(s) 239, 260, 269, 331, 567, 574
AlwI GGATC 1 cut(s) 491
AoxI GGCC 2 cut(s) 6, 50
ApeKI GCWGC 3 cut(s) 192, 212, 236
ApoI RAATTY 1 cut(s) 161
Asp700I GAANNNNTTC 1 cut(s) 360
AspS9I GGNCC 2 cut(s) 6, 51
BanI GGYRCC 1 cut(s) 304
BbvI GCAGC 3 cut(s) 199, 204, 248
BccI CCATC 2 cut(s) 173, 396
BceAI ACGGC 1 cut(s) 148
BclI TGATCA 1 cut(s) 378
BfaI CTAG 1 cut(s) 501
BisI GCNGC 3 cut(s) 193, 213, 237
BlsI GCNGC 3 cut(s) 194, 214, 238
BmgT120I GGNCC 2 cut(s) 6, 51
BmiI GGNNCC 2 cut(s) 7, 306
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 1 cut(s) 409
BmuI ACTGGG 1 cut(s) 368
Bpu10I CCTNAGC 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 12, 374
BseGI GGATG 2 cut(s) 322, 424
BseMII CTCAG 1 cut(s) 268
BseNI ACTGG 2 cut(s) 12, 374
BseXI GCAGC 3 cut(s) 199, 204, 248
BsgI GTGCAG 2 cut(s) 54, 606
BshFI GGCC 2 cut(s) 8, 52
BshNI GGYRCC 1 cut(s) 304
BslFI GGGAC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 2 cut(s) 8, 52
Bsp143I GATC 2 cut(s) 378, 496
BspANI GGCC 2 cut(s) 8, 52
BspCNI CTCAG 1 cut(s) 267
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 7, 306
BspPI GGATC 1 cut(s) 491
BspT107I GGYRCC 1 cut(s) 304
BsrI ACTGG 2 cut(s) 12, 374
BssMI GATC 2 cut(s) 378, 496
Bst4CI ACNGT 4 cut(s) 248, 295, 401, 545
BstDEI CTNAG 3 cut(s) 59, 254, 609
BstF5I GGATG 2 cut(s) 322, 424
BstKTI GATC 2 cut(s) 381, 499
BstMBI GATC 2 cut(s) 378, 496
BstMWI GCNNNNNNNGC 4 cut(s) 266, 275, 428, 521
BstNSI RCATGY 1 cut(s) 142
BstV1I GCAGC 3 cut(s) 199, 204, 248
BsuRI GGCC 2 cut(s) 8, 52
BtsCI GGATG 2 cut(s) 322, 424
BtsIMutI CAGTG 3 cut(s) 300, 381, 406
CciI TCATGA 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 6, 51
Csp6I GTAC 3 cut(s) 95, 320, 450
CviAII CATG 2 cut(s) 139, 242
CviQI GTAC 3 cut(s) 95, 320, 450
DdeI CTNAG 3 cut(s) 59, 254, 609
DpnI GATC 2 cut(s) 380, 498
DpnII GATC 2 cut(s) 378, 496
FaeI CATG 2 cut(s) 142, 245
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 1 cut(s) 302
FatI CATG 2 cut(s) 138, 241
FbaI TGATCA 1 cut(s) 378
Fnu4HI GCNGC 3 cut(s) 193, 213, 237
FokI GGATG 2 cut(s) 329, 431
Fsp4HI GCNGC 3 cut(s) 193, 213, 237
FspBI CTAG 1 cut(s) 501
GluI GCNGC 3 cut(s) 193, 213, 237
HaeIII GGCC 2 cut(s) 8, 52
Hin1II CATG 2 cut(s) 142, 245
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 2 cut(s) 203, 425
Hpy166II GTNNAC 2 cut(s) 130, 251
Hpy188I TCNGA 3 cut(s) 257, 490, 521
Hpy188III TCNNGA 2 cut(s) 242, 456
Hpy8I GTNNAC 2 cut(s) 130, 251
HpyCH4III ACNGT 4 cut(s) 248, 295, 401, 545
HpyCH4V TGCA 5 cut(s) 35, 215, 278, 466, 587
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 275, 428, 521
HpyF3I CTNAG 3 cut(s) 59, 254, 609
Hsp92II CATG 2 cut(s) 142, 245
Ksp22I TGATCA 1 cut(s) 378
Kzo9I GATC 2 cut(s) 378, 496
LmnI GCTCC 1 cut(s) 521
LpnPI CCDG 7 cut(s) 25, 165, 192, 264, 387, 441, 542
Lsp1109I GCAGC 3 cut(s) 199, 204, 248
LweI GCATC 1 cut(s) 409
MaeI CTAG 1 cut(s) 501
MaeIII GTNAC 2 cut(s) 64, 221
MalI GATC 2 cut(s) 380, 498
MboI GATC 2 cut(s) 378, 496
MluCI AATT 6 cut(s) 71, 161, 168, 198, 467, 538
MnlI CCTC 4 cut(s) 182, 334, 497, 583
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 3 cut(s) 74, 113, 171
MwoI GCNNNNNNNGC 4 cut(s) 266, 275, 428, 521
NdeII GATC 2 cut(s) 378, 496
NlaIII CATG 2 cut(s) 142, 245
NlaIV GGNNCC 2 cut(s) 7, 306
NmuCI GTSAC 2 cut(s) 64, 221
NspI RCATGY 1 cut(s) 142
PagI TCATGA 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 203, 425
PkrI GCNGC 3 cut(s) 194, 214, 238
PspN4I GGNNCC 2 cut(s) 7, 306
PspPI GGNCC 2 cut(s) 6, 51
RsaI GTAC 3 cut(s) 96, 321, 451
RsaNI GTAC 3 cut(s) 95, 320, 450
SaqAI TTAA 3 cut(s) 74, 113, 171
SatI GCNGC 3 cut(s) 193, 213, 237
Sau3AI GATC 2 cut(s) 378, 496
Sau96I GGNCC 2 cut(s) 6, 51
SfaNI GCATC 1 cut(s) 409
Sse9I AATT 6 cut(s) 71, 161, 168, 198, 467, 538
SspMI CTAG 1 cut(s) 501
TaaI ACNGT 4 cut(s) 248, 295, 401, 545
TaqI TCGA 1 cut(s) 25
TasI AATT 6 cut(s) 71, 161, 168, 198, 467, 538
TatI WGTACW 1 cut(s) 94
TfiI GAWTC 2 cut(s) 203, 425
Tru1I TTAA 3 cut(s) 74, 113, 171
Tru9I TTAA 3 cut(s) 74, 113, 171
TscAI CASTG 3 cut(s) 300, 381, 406
TseFI GTSAC 2 cut(s) 64, 221
TseI GCWGC 3 cut(s) 192, 212, 236
Tsp45I GTSAC 2 cut(s) 64, 221
TspDTI ATGAA 3 cut(s) 6, 10, 538
TspRI CASTG 3 cut(s) 300, 381, 406
XapI RAATTY 1 cut(s) 161
XceI RCATGY 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.