Prupe.4G065000_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
3128939 .. 3130211
1273 bp
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UTR
Exon/CDS
Intron
Prupe.4G065000.1

Sequence Viewer

Length: 210 bp
ATGCAGGCTCTCAGATGGGAATCGAAGGAAGAGGAAGAGCCCCTTGCAAGCCTAAGAGAAGACCCACTCTCTCGAGATGAAGAGATGACCCACCATTTCCAATTGAGCTTGCGAGATTTCTATTTCTATAAGCCACACGAATATTTAAAAAAAAGAAAAGCTATTGGTGATATGCATCCAAACAGAAAATGCAATCATATTCAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

8.49

Weight (kDa)

6.5

Isoelectric Point (pI)

77.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022472)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 2 cut(s) 108, 161
AluI AGCT 2 cut(s) 108, 161
Ama87I CYCGRG 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 72
BanII GRGCYC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 66
BccI CCATC 1 cut(s) 9
BmeT110I CYCGRG 1 cut(s) 72
BmsI GCATC 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 66
BsaBI GATNNNNATC 2 cut(s) 19, 174
Bse8I GATNNNNATC 2 cut(s) 19, 174
BseGI GGATG 1 cut(s) 175
BseJI GATNNNNATC 2 cut(s) 19, 174
BseMII CTCAG 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 72
BsoBI CYCGRG 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 24
BspQI GCTCTTC 1 cut(s) 30
Bst6I CTCTTC 3 cut(s) 24, 30, 75
BstC8I GCNNGC 3 cut(s) 6, 49, 110
BstDEI CTNAG 2 cut(s) 11, 53
BstF5I GGATG 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 3 cut(s) 6, 49, 110
CviJI RGCY 6 cut(s) 8, 40, 51, 108, 133, 161
CviKI_1 RGCY 6 cut(s) 8, 40, 51, 108, 133, 161
DdeI CTNAG 2 cut(s) 11, 53
DraI TTTAAA 1 cut(s) 147
Eam1104I CTCTTC 3 cut(s) 24, 30, 75
EarI CTCTTC 3 cut(s) 24, 30, 75
Eco24I GRGCYC 1 cut(s) 42
Eco88I CYCGRG 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 42
FaiI YATR 3 cut(s) 129, 173, 198
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FokI GGATG 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 42
HinfI GANTC 1 cut(s) 20
HphI GGTGA 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 2 cut(s) 72, 74
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 4 cut(s) 4, 47, 175, 192
HpyF3I CTNAG 2 cut(s) 11, 53
LguI GCTCTTC 1 cut(s) 30
LweI GCATC 1 cut(s) 184
MboII GAAGA 4 cut(s) 41, 47, 71, 92
MfeI CAATTG 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 1 cut(s) 101
MnlI CCTC 1 cut(s) 25
Mph1103I ATGCAT 1 cut(s) 177
MseI TTAA 1 cut(s) 146
MunI CAATTG 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 177
PaeR7I CTCGAG 1 cut(s) 72
PciSI GCTCTTC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 20
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 146
SduI GDGCHC 1 cut(s) 42
SetI ASST 2 cut(s) 110, 163
SfaNI GCATC 1 cut(s) 184
Sfr274I CTCGAG 1 cut(s) 72
SgeI CNNG 8 cut(s) 17, 56, 60, 84, 86, 121, 125, 149
SlaI CTCGAG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 1 cut(s) 101
SspI AATATT 1 cut(s) 143
TaqI TCGA 2 cut(s) 23, 73
TasI AATT 1 cut(s) 101
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 93
TspRI CASTG 1 cut(s) 209
XhoI CTCGAG 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.