Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0024431

Physical Location & Seq

Genomic Coordinates Reverse (-)

3463426 .. 3465832

Gene Structure 2407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G070600.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCAACAAATTATGAGATGGGTGTTAGATGGTTCAAGATGATACTTGGTGTTTTGGTGTTTTCAATATTATTATCACAATATTCTTGTGTTTATGGAGAAGCACCGCAAGTACCATGTTTCTTCATTTTTGGTGATTCGTTGGTCGACAGTGGCAATAATAACTACCTCCCGACCTTGGCTAAAGTGAATTACCTTCCCTATGGGGTTGATTTTCCCATTGGAGCAACAGGAAGATTTTGCAATGGCAGAACCTCAGTCGATATACTTGCTGAACTTCTGGGTTTTAAGAAACCCATCCCACCATTTGCAACTACTTGGGGCCTGGTCATACTTAGAGGTCTGAATTACGCATCTGGGGCTTCAGGAATTCGAGCTGAATCTGGCACTGAGATGGGTGTTAATGTCAACTTAGAACAGCAGTTACGAAATCACCATGTTACAGTCTTGCGCATTGCTTCCATTCTGCGACATAAAGCATTAGCTCTCAAGTACTTAAACAAGTGCTTTTATTTTATGGGAATCGGCAACAACGATTACATTAACAATTACTTCCAGACTCAGTATTTTAACACCAGTCGAATATATACACTTGAACAATATGCTTCAGTTCTTATTGAACAATATTCTCAACAAATTATGACTTTGTATAGGTATGGAGCAAGGAAGGTGGCCTTGGTTGGAGTGGCACCAATAGGCAACGCAACCGAACCTTTTAATGAAAAGCTTAGAGCTCTGGTGGACAAGCTCAACGCCGATCTGGAAGATGCACAATTCATCTATGTTAACTCTTCTTCAGTGTCACGTCCTGCTGATTTCAAGGTTCCGAACATTAGCTGCTGTGCAGTAAATGAACTTGGGCTATGCAATCCTTTCGAACCTGTATGCCAGAATAGAAGTGACTATGCATTATGGGACTCATTCCATCCGACTGAGGCAGCCAATATAGCCAGTGCAGGAAGAGCATACAGTTCTCAAGACCCATCGGACACTTATCCCATGGATATCAGTCACCTAGTTCAGCTTAGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

345

Amino Acids

38.34

Weight (kDa)

6.22

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024431)

Species	Orthologous Gene IDs
malus_domestica	MD00G1094000.v1.1 MD05G1293600.v1.1
prunus_persica	Prupe.4G070600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	688
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	369
AcuI	CTGAAG	3 cut(s)	348, 591, 780
AfaI	GTAC	2 cut(s)	114, 494
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	5 cut(s)	37, 66, 596, 620, 820
AjiI	CACGTC	1 cut(s)	806
AjnI	CCWGG	1 cut(s)	324
AjuI	GAANNNNNNNTTGG	2 cut(s)	659, 691
AluBI	AGCT	7 cut(s)	377, 485, 727, 734, 748, 837, 1024
AluI	AGCT	7 cut(s)	377, 485, 727, 734, 748, 837, 1024
Alw21I	GWGCWC	1 cut(s)	736
AoxI	GGCC	2 cut(s)	322, 672
ApeKI	GCWGC	2 cut(s)	837, 938
ApoI	RAATTY	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	3 cut(s)	146, 425, 1004
AsuII	TTCGAA	1 cut(s)	876
BanI	GGYRCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	736
Bbv12I	GWGCWC	1 cut(s)	736
BbvI	GCAGC	2 cut(s)	824, 950
BccI	CCATC	6 cut(s)	13, 24, 305, 388, 933, 991
BcgI	CGANNNNNNTGC	4 cut(s)	251, 285, 856, 890
BciT130I	CCWGG	1 cut(s)	326
BfaI	CTAG	1 cut(s)	1016
BisI	GCNGC	2 cut(s)	838, 939
BlsI	GCNGC	2 cut(s)	839, 940
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	1 cut(s)	326
BmgBI	CACGTC	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	3 cut(s)	323, 690, 825
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	2 cut(s)	362, 757
Bpu14I	TTCGAA	1 cut(s)	876
BpuEI	CTTGAG	2 cut(s)	473, 960
BsaJI	CCNNGG	3 cut(s)	177, 675, 999
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	2 cut(s)	576, 951
Bse3DI	GCAATG	2 cut(s)	250, 453
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	3 cut(s)	177, 675, 999
BseGI	GGATG	2 cut(s)	297, 925
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMI	GCAATG	2 cut(s)	250, 453
BseMII	CTCAG	4 cut(s)	270, 381, 575, 924
BseNI	ACTGG	2 cut(s)	576, 951
BseXI	GCAGC	2 cut(s)	824, 950
BsgI	GTGCAG	2 cut(s)	864, 975
BshFI	GGCC	2 cut(s)	324, 674
BshNI	GGYRCC	1 cut(s)	688
BsiHKAI	GWGCWC	1 cut(s)	736
BslFI	GGGAC	1 cut(s)	929
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	929
BsnI	GGCC	2 cut(s)	324, 674
Bsp119I	TTCGAA	1 cut(s)	876
Bsp1286I	GDGCHC	1 cut(s)	736
Bsp143I	GATC	1 cut(s)	757
Bsp19I	CCATGG	1 cut(s)	999
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	2 cut(s)	324, 674
BspCNI	CTCAG	4 cut(s)	269, 382, 574, 925
BspLI	GGNNCC	3 cut(s)	323, 690, 825
BspQI	GCTCTTC	1 cut(s)	955
BspT104I	TTCGAA	1 cut(s)	876
BspT107I	GGYRCC	1 cut(s)	688
BsrDI	GCAATG	2 cut(s)	250, 453
BsrI	ACTGG	2 cut(s)	576, 951
BssECI	CCNNGG	3 cut(s)	177, 675, 999
BssMI	GATC	1 cut(s)	757
BssT1I	CCWWGG	3 cut(s)	177, 675, 999
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	3 cut(s)	152, 445, 971
Bst6I	CTCTTC	2 cut(s)	796, 955
BstBI	TTCGAA	1 cut(s)	876
BstDEI	CTNAG	8 cut(s)	256, 335, 390, 412, 561, 728, 933, 1025
BstDSI	CCRYGG	1 cut(s)	999
BstF5I	GGATG	2 cut(s)	297, 925
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	1 cut(s)	760
BstMBI	GATC	1 cut(s)	757
BstMWI	GCNNNNNNNGC	3 cut(s)	359, 947, 962
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	824, 950
BsuRI	GGCC	2 cut(s)	324, 674
BtgI	CCRYGG	1 cut(s)	999
BtrI	CACGTC	1 cut(s)	806
BtsCI	GGATG	2 cut(s)	297, 925
BtsIMutI	CAGTG	4 cut(s)	157, 387, 804, 958
CfoI	GCGC	1 cut(s)	453
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	113, 493
CspCI	CAANNNNNGTGG	2 cut(s)	651, 686
CviAII	CATG	3 cut(s)	117, 437, 1000
CviQI	GTAC	2 cut(s)	113, 493
DdeI	CTNAG	8 cut(s)	256, 335, 390, 412, 561, 728, 933, 1025
DpnI	GATC	1 cut(s)	759
DpnII	GATC	1 cut(s)	757
Eam1104I	CTCTTC	2 cut(s)	796, 955
EarI	CTCTTC	2 cut(s)	796, 955
Ecl136II	GAGCTC	1 cut(s)	734
Eco130I	CCWWGG	3 cut(s)	177, 675, 999
Eco24I	GRGCYC	1 cut(s)	736
Eco32I	GATATC	1 cut(s)	1006
Eco53kI	GAGCTC	1 cut(s)	734
Eco57I	CTGAAG	3 cut(s)	348, 591, 780
EcoICRI	GAGCTC	1 cut(s)	734
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	1006
EcoT14I	CCWWGG	3 cut(s)	177, 675, 999
EcoT22I	ATGCAT	1 cut(s)	910
EcoT38I	GRGCYC	1 cut(s)	736
ErhI	CCWWGG	3 cut(s)	177, 675, 999
FaeI	CATG	3 cut(s)	120, 440, 1003
FalI	AAGNNNNNCTT	2 cut(s)	659, 691
FaqI	GGGAC	1 cut(s)	929
FatI	CATG	3 cut(s)	116, 436, 999
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	838, 939
FokI	GGATG	2 cut(s)	284, 912
FriOI	GRGCYC	1 cut(s)	736
Fsp4HI	GCNGC	2 cut(s)	838, 939
FspBI	CTAG	1 cut(s)	1016
FspI	TGCGCA	1 cut(s)	452
GlaI	GCGC	1 cut(s)	452
GluI	GCNGC	2 cut(s)	838, 939
HaeIII	GGCC	2 cut(s)	324, 674
HhaI	GCGC	1 cut(s)	453
Hin1II	CATG	3 cut(s)	120, 440, 1003
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HincII	GTYRAC	3 cut(s)	148, 409, 787
HindII	GTYRAC	3 cut(s)	148, 409, 787
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	5 cut(s)	137, 380, 522, 559, 917
HpaI	GTTAAC	1 cut(s)	787
HphI	GGTGA	3 cut(s)	146, 425, 1004
Hpy166II	GTNNAC	4 cut(s)	148, 409, 742, 787
Hpy188I	TCNGA	4 cut(s)	345, 828, 930, 988
Hpy188III	TCNNGA	6 cut(s)	37, 172, 366, 556, 761, 977
Hpy8I	GTNNAC	4 cut(s)	148, 409, 742, 787
HpyAV	CCTTC	2 cut(s)	206, 661
HpyCH4III	ACNGT	3 cut(s)	152, 445, 971
HpyCH4IV	ACGT	1 cut(s)	805
HpyCH4V	TGCA	7 cut(s)	243, 311, 770, 845, 867, 908, 956
HpyF10VI	GCNNNNNNNGC	3 cut(s)	359, 947, 962
HpyF3I	CTNAG	8 cut(s)	256, 335, 390, 412, 561, 728, 933, 1025
HpySE526I	ACGT	1 cut(s)	805
Hsp92II	CATG	3 cut(s)	120, 440, 1003
HspAI	GCGC	1 cut(s)	451
KspAI	GTTAAC	1 cut(s)	787
Kzo9I	GATC	1 cut(s)	757
LguI	GCTCTTC	1 cut(s)	955
LmnI	GCTCC	2 cut(s)	224, 659
Lsp1109I	GCAGC	2 cut(s)	824, 950
LweI	GCATC	2 cut(s)	362, 757
MaeI	CTAG	1 cut(s)	1016
MaeII	ACGT	1 cut(s)	805
MaeIII	GTNAC	5 cut(s)	423, 439, 801, 899, 1010
MalI	GATC	1 cut(s)	759
MboI	GATC	1 cut(s)	757
MboII	GAAGA	6 cut(s)	115, 246, 776, 783, 786, 972
MhlI	GDGCHC	1 cut(s)	736
MluCI	AATT	7 cut(s)	10, 190, 346, 369, 547, 636, 773
MlyI	GAGTC	2 cut(s)	553, 911
MmeI	TCCRAC	2 cut(s)	661, 953
MnlI	CCTC	4 cut(s)	179, 265, 332, 928
Mph1103I	ATGCAT	1 cut(s)	910
MseI	TTAA	7 cut(s)	288, 402, 497, 543, 570, 717, 786
MslI	CAYNNNNRTG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	359, 947, 962
NcoI	CCATGG	1 cut(s)	999
NdeII	GATC	1 cut(s)	757
NlaIII	CATG	3 cut(s)	120, 440, 1003
NlaIV	GGNNCC	3 cut(s)	323, 690, 825
NmuCI	GTSAC	3 cut(s)	801, 899, 1010
NsbI	TGCGCA	1 cut(s)	452
NsiI	ATGCAT	1 cut(s)	910
NspV	TTCGAA	1 cut(s)	876
PciSI	GCTCTTC	1 cut(s)	955
PcsI	WCGNNNNNNNCGW	1 cut(s)	531
PfeI	GAWTC	3 cut(s)	137, 380, 522
PkrI	GCNGC	2 cut(s)	839, 940
PleI	GAGTC	2 cut(s)	553, 911
PpsI	GAGTC	2 cut(s)	553, 911
Psp124BI	GAGCTC	1 cut(s)	736
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	323, 690, 825
PspPI	GGNCC	1 cut(s)	322
PsrI	GAACNNNNNNTAC	2 cut(s)	408, 440
RsaI	GTAC	2 cut(s)	114, 494
RsaNI	GTAC	2 cut(s)	113, 493
RseI	CAYNNNNRTG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	736
SalI	GTCGAC	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	955
SaqAI	TTAA	7 cut(s)	288, 402, 497, 543, 570, 717, 786
SatI	GCNGC	2 cut(s)	838, 939
Sau3AI	GATC	1 cut(s)	757
Sau96I	GGNCC	1 cut(s)	322
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	2 cut(s)	553, 911
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	736
SfaNI	GCATC	2 cut(s)	362, 757
SfuI	TTCGAA	1 cut(s)	876
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	2 cut(s)	488, 975
SmoI	CTYRAG	2 cut(s)	488, 975
Sse9I	AATT	7 cut(s)	10, 190, 346, 369, 547, 636, 773
SsiI	CCGC	1 cut(s)	107
SspI	AATATT	3 cut(s)	69, 83, 626
SspMI	CTAG	1 cut(s)	1016
SstI	GAGCTC	1 cut(s)	736
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	3 cut(s)	177, 675, 999
TaaI	ACNGT	3 cut(s)	152, 445, 971
TaiI	ACGT	1 cut(s)	808
TaqI	TCGA	5 cut(s)	147, 261, 373, 580, 876
TasI	AATT	7 cut(s)	10, 190, 346, 369, 547, 636, 773
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	3 cut(s)	137, 380, 522
Tru1I	TTAA	7 cut(s)	288, 402, 497, 543, 570, 717, 786
Tru9I	TTAA	7 cut(s)	288, 402, 497, 543, 570, 717, 786
TscAI	CASTG	4 cut(s)	157, 394, 804, 958
TseFI	GTSAC	3 cut(s)	801, 899, 1010
TseI	GCWGC	2 cut(s)	837, 938
Tsp45I	GTSAC	3 cut(s)	801, 899, 1010
TspDTI	ATGAA	4 cut(s)	115, 735, 766, 867
TspRI	CASTG	4 cut(s)	157, 394, 804, 958
XapI	RAATTY	1 cut(s)	369
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	1 cut(s)	1016
ZrmI	AGTACT	1 cut(s)	494
Zsp2I	ATGCAT	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.