Prupe.4G091000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0028794
Physical Location & Seq
Reverse (-)
4536131 .. 4536572
442 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G091000.1

Sequence Viewer

Length: 408 bp
ATGTTTCGGTCAAAAGACTCAAAACCAGACCAAAAGCGTCACGTTCCCATTCGTCGAAAAAGCAGCCGTAGATTCGTACCTCTGTTTCGGAAATCTAAAGACGCCCTGAGAAGAAGAAACAGAAAGAAAAGAAGCAGAAGCAAAGGCCGTGTCAACAGAGAATCAGGGATACACAAATTTCGATTTGCAACCGCTGGTCCGGCAAGGGCTGGCTTCGTTGATGCAATCACGGCTCTAATCAAAGCAATTACTCGTAGCATTAAGATTTCAAGGGGCAGAGAATGCATGAGAGCTTTTTCTAAGTCGTTGTTTGCATGCCCTTCGTTTCACGGCGGTCGCGGTGCCCTACCCTCGGCCGGTGGGCATCCCTCCGATCTTACCTTCCTCGCCGGCGGTGGCTGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.04

Weight (kDa)

11.93

Isoelectric Point (pI)

75.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028794)

Species Orthologous Gene IDs
malus_domestica MD05G1272400.v1.1
prunus_persica Prupe.4G091000_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 341
AccII CGCG 1 cut(s) 339
AciI CCGC 4 cut(s) 192, 333, 339, 393
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 352, 356
AgsI TTSAA 1 cut(s) 270
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AoxI GGCC 2 cut(s) 145, 354
ApeKI GCWGC 3 cut(s) 63, 399, 402
ApoI RAATTY 1 cut(s) 176
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspS9I GGNCC 1 cut(s) 197
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 346
BanI GGYRCC 1 cut(s) 341
BbvI GCAGC 3 cut(s) 75, 386, 389
BceAI ACGGC 4 cut(s) 51, 132, 246, 346
BcgI CGANNNNNNTGC 2 cut(s) 303, 337
BciVI GTATCC 1 cut(s) 162
BfaI CTAG 1 cut(s) 406
BfuI GTATCC 1 cut(s) 162
BisI GCNGC 3 cut(s) 64, 400, 403
BlsI GCNGC 3 cut(s) 65, 401, 404
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 343
BmsI GCATC 2 cut(s) 211, 373
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 351
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 356
Bse118I RCCGGY 2 cut(s) 356, 389
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 2 cut(s) 352, 356
BseMII CTCAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 346
BseX3I CGGCCG 1 cut(s) 354
BseXI GCAGC 3 cut(s) 75, 386, 389
Bsh1236I CGCG 1 cut(s) 339
Bsh1285I CGRYCG 2 cut(s) 337, 357
BshFI GGCC 2 cut(s) 147, 356
BshNI GGYRCC 1 cut(s) 341
BsiEI CGRYCG 2 cut(s) 337, 357
BsiSI CCGG 3 cut(s) 200, 357, 390
BslI CCNNNNNNNGG 2 cut(s) 352, 356
BsmI GAATGC 1 cut(s) 287
BsnI GGCC 2 cut(s) 147, 356
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 1 cut(s) 373
BspACI CCGC 4 cut(s) 192, 333, 339, 393
BspANI GGCC 2 cut(s) 147, 356
BspCNI CTCAG 1 cut(s) 99
BspFNI CGCG 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 341
BsrFI RCCGGY 2 cut(s) 356, 389
BssAI RCCGGY 2 cut(s) 356, 389
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 1 cut(s) 373
BssNI GRCGYC 1 cut(s) 102
BstACI GRCGYC 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 282
BstC8I GCNNGC 3 cut(s) 211, 316, 391
BstDEI CTNAG 2 cut(s) 107, 300
BstF5I GGATG 1 cut(s) 364
BstFNI CGCG 1 cut(s) 339
BstKTI GATC 1 cut(s) 376
BstMBI GATC 1 cut(s) 373
BstMCI CGRYCG 2 cut(s) 337, 357
BstMWI GCNNNNNNNGC 4 cut(s) 200, 230, 282, 399
BstNSI RCATGY 1 cut(s) 318
BstSLI GKGCMC 1 cut(s) 346
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 3 cut(s) 75, 386, 389
BstZI CGGCCG 1 cut(s) 354
BsuI GTATCC 1 cut(s) 162
BsuRI GGCC 2 cut(s) 147, 356
BtsCI GGATG 1 cut(s) 364
Cac8I GCNNGC 3 cut(s) 211, 316, 391
Cfr10I RCCGGY 2 cut(s) 356, 389
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 2 cut(s) 26, 110
Csp6I GTAC 1 cut(s) 77
CviAII CATG 2 cut(s) 286, 315
CviJI RGCY 8 cut(s) 66, 147, 209, 213, 233, 293, 356, 399
CviKI_1 RGCY 8 cut(s) 66, 147, 209, 213, 233, 293, 356, 399
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 2 cut(s) 107, 300
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 354
EagI CGGCCG 1 cut(s) 354
EclXI CGGCCG 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 197
Eco52I CGGCCG 1 cut(s) 354
EcoT22I ATGCAT 1 cut(s) 287
FaeI CATG 2 cut(s) 289, 318
FaiI YATR 2 cut(s) 287, 316
FatI CATG 2 cut(s) 285, 314
Fnu4HI GCNGC 3 cut(s) 64, 400, 403
FokI GGATG 1 cut(s) 351
Fsp4HI GCNGC 3 cut(s) 64, 400, 403
FspBI CTAG 1 cut(s) 406
GluI GCNGC 3 cut(s) 64, 400, 403
HaeIII GGCC 2 cut(s) 147, 356
HapII CCGG 3 cut(s) 200, 357, 390
HgaI GACGC 2 cut(s) 26, 110
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 2 cut(s) 289, 318
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 3 cut(s) 17, 72, 161
HpaII CCGG 3 cut(s) 200, 357, 390
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 90, 373
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 57
HpyAV CCTTC 2 cut(s) 330, 391
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 4 cut(s) 188, 224, 285, 314
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 230, 282, 399
HpyF3I CTNAG 2 cut(s) 107, 300
HpySE526I ACGT 1 cut(s) 42
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 2 cut(s) 289, 318
KroI GCCGGC 1 cut(s) 389
KroNI GCCGGC 1 cut(s) 391
Kzo9I GATC 1 cut(s) 373
LpnPI CCDG 8 cut(s) 39, 119, 150, 180, 195, 213, 370, 403
Lsp1109I GCAGC 3 cut(s) 75, 386, 389
LweI GCATC 2 cut(s) 211, 373
MaeI CTAG 1 cut(s) 406
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 38
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 2 cut(s) 123, 126
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 2 cut(s) 176, 246
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 4 cut(s) 90, 361, 379, 395
Mph1103I ATGCAT 1 cut(s) 287
MreI CGCCGGCG 1 cut(s) 389
MroNI GCCGGC 1 cut(s) 389
MseI TTAA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 3 cut(s) 200, 357, 390
Mva1269I GAATGC 1 cut(s) 287
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 4 cut(s) 200, 230, 282, 399
NaeI GCCGGC 1 cut(s) 391
NdeII GATC 1 cut(s) 373
NgoMIV GCCGGC 1 cut(s) 389
NlaIII CATG 2 cut(s) 289, 318
NlaIV GGNNCC 1 cut(s) 343
NmeAIII GCCGAG 1 cut(s) 332
NmuCI GTSAC 1 cut(s) 38
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 1 cut(s) 318
PaeI GCATGC 1 cut(s) 318
PctI GAATGC 1 cut(s) 287
PdiI GCCGGC 1 cut(s) 391
PfeI GAWTC 2 cut(s) 72, 161
PkrI GCNGC 3 cut(s) 65, 401, 404
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 343
PspPI GGNCC 1 cut(s) 197
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 3 cut(s) 64, 400, 403
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 11
SduI GDGCHC 1 cut(s) 346
SetI ASST 4 cut(s) 45, 82, 295, 383
SfaNI GCATC 2 cut(s) 211, 373
SgrAI CRCCGGYG 1 cut(s) 389
SinI GGWCC 1 cut(s) 197
SphI GCATGC 1 cut(s) 318
Sse9I AATT 2 cut(s) 176, 246
SsiI CCGC 4 cut(s) 192, 333, 339, 393
SspMI CTAG 1 cut(s) 406
TaiI ACGT 1 cut(s) 45
TaqI TCGA 2 cut(s) 55, 181
TasI AATT 2 cut(s) 176, 246
TfiI GAWTC 2 cut(s) 72, 161
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 3 cut(s) 63, 399, 402
Tsp45I GTSAC 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 176
XceI RCATGY 1 cut(s) 318
XspI CTAG 1 cut(s) 406
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.