Prupe.4G165100_v2.0.a1
ERF Family

Pectate lyase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0024493
Physical Location & Seq
Reverse (-)
9583947 .. 9585954
2008 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G165100.1

Sequence Viewer

Length: 1206 bp
ATGGGTTCAAAATTTATTCATGGAATTACCTGGTTTTTGTTCTTGGTAGCGATATGTGCCATCAAAGCCAAAGCTATCAGTGTTGATGTCGTTAAATTTGGAGCCAAGGGTGATGGCAAGACAGATGATACCAAGGCTTTCACACAAGCATGGACACAAGCCTGCAGTGAGAGGCAAAATAACAGATATGTGATACCCAAAGGAACATATATAGTTGGTCCGGTTGATTTTGCAGGGCCCTGCAAAGCAAAAACTATTCACTTTAAGGTTGACGGAACAGTGCAGTCTTCAAAAAAGCAGTCGGTAACTGGAGGTGCGCACCCTAATGCGTGGATTAGTTTCACGCAGGTTAACAACTTGTTCATCTCAGGCGATGGCATTTTTGATGGCCAAGGATTTGAAGGCAATTGTACTAAAGCTAAACAATGCGAACAACCGCCTCTAAATTTAATTTTCGCTATGGTTAAGGATTCACACATCCAAGGCATAACATCGAACAATAGCGTCGGCGGTCACATTGGCATTTATCGGTCAATAAACGTGACAGTGGACGATGTTGACATTGGCATCAAAGGTGGGGAGGGAATCCTGATCGAAAAGTCAACAAACATTAACATCATCAATACAAACATCAAAATCCTTCACGACAACTGTGTCACTATCCTAGATGGAAACACTGGGATCAACATCGAAAAAATGACCTGCTCACAAGGCAATGGCCTTGGTGTGAGTGTCCTAGGCAACACTGGCAAAGAGGAGCCGATTAAGGGCGTGACCGTGAGAAACTGTACCTTCTCACATACTGAGGGTGCAATTAGGATCCAGAGTGCGGCGGCTTCTAATGCTAATATAGCCATCTCTAATTTGATTTTTGAAGACATTATTTTCGACTATCTTCAGAACATGGCTATAATCCTAGACCAGGAGCATTGCCCATCAAAACAGTGCCGAACGACAAACCCCTCCAAAGTTAAGGTGGAAAATGTGAGCTTCAAGAACATTAAGGGCACTTCCGTGGACCCTCGTATCGTTATTCTTGAGTGTGGCACTGCTCCCGACGCATGTAAGGACATCAGGTTTATCGACTTGAGAGTTCTCGTCGAAGGGGATGACCGTTTGGAGACTCAATTTAGATGTAAAAACGTGAAGCCTGCCGTGGCTGGCCATGTTGATCCTGCTGCTTGTAATACACGAGCTGTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

402

Amino Acids

43.2

Weight (kDa)

8.13

Isoelectric Point (pI)

28.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024493)

Species Orthologous Gene IDs
malus_domestica MD11G1263400.v1.1
prunus_persica Prupe.4G165000_v2.0.a1 Prupe.4G165100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 653
Acc16I TGCGCA 1 cut(s) 318
Acc36I ACCTGC 2 cut(s) 337, 710
AciI CCGC 4 cut(s) 437, 510, 830, 833
AclWI GGATC 4 cut(s) 689, 814, 827, 1166
AcoI YGGCCR 2 cut(s) 388, 1162
AcsI RAATTY 3 cut(s) 11, 95, 445
AcuI CTGAAG 1 cut(s) 881
AfaI GTAC 2 cut(s) 412, 790
AfiI CCNNNNNNNGG 3 cut(s) 767, 829, 922
AgsI TTSAA 5 cut(s) 9, 291, 401, 875, 994
AjnI CCWGG 2 cut(s) 29, 921
AleI CACNNNNGTG 1 cut(s) 1013
AluBI AGCT 4 cut(s) 74, 419, 990, 1196
AluI AGCT 4 cut(s) 74, 419, 990, 1196
Alw26I GTCTC 1 cut(s) 1115
AlwI GGATC 4 cut(s) 689, 814, 827, 1166
AoxI GGCC 4 cut(s) 236, 388, 718, 1162
ApaI GGGCCC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 1178
ApoI RAATTY 3 cut(s) 11, 95, 445
ArsI GACNNNNNNTTYG 4 cut(s) 284, 316, 869, 901
AspA2I CCTAGG 1 cut(s) 736
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 4 cut(s) 218, 236, 237, 1018
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 2 cut(s) 218, 1018
AvrII CCTAGG 1 cut(s) 736
BaeGI GKGCMC 2 cut(s) 240, 1010
BaeI ACNNNNGTAYC 2 cut(s) 1009, 1042
BalI TGGCCA 2 cut(s) 390, 1164
BamHI GGATCC 1 cut(s) 819
BanII GRGCYC 1 cut(s) 240
BauI CACGAG 1 cut(s) 1191
BbsI GAAGAC 2 cut(s) 279, 882
BbvI GCAGC 1 cut(s) 1165
BccI CCATC 7 cut(s) 68, 107, 368, 380, 662, 863, 943
BceAI ACGGC 1 cut(s) 1139
BciT130I CCWGG 2 cut(s) 31, 923
BcoDI GTCTC 1 cut(s) 1115
BfaI CTAG 3 cut(s) 665, 737, 917
BfmI CTRYAG 1 cut(s) 163
BfuAI ACCTGC 2 cut(s) 337, 710
BisI GCNGC 3 cut(s) 831, 834, 1179
BlnI CCTAGG 1 cut(s) 736
BlsI GCNGC 3 cut(s) 832, 835, 1180
Bme1390I CCNGG 2 cut(s) 31, 923
Bme18I GGWCC 2 cut(s) 218, 1018
BmgT120I GGNCC 4 cut(s) 218, 236, 237, 1018
BmiI GGNNCC 5 cut(s) 103, 238, 759, 821, 1020
BmrFI CCNGG 2 cut(s) 31, 923
BmrI ACTGGG 1 cut(s) 687
BmsI GCATC 1 cut(s) 576
BmuI ACTGGG 1 cut(s) 687
BpiI GAAGAC 2 cut(s) 279, 882
BpmI CTGGAG 1 cut(s) 330
BpuEI CTTGAG 2 cut(s) 1058, 1108
BsaBI GATNNNNATC 1 cut(s) 686
BsaJI CCNNGG 8 cut(s) 105, 132, 391, 481, 721, 736, 1014, 1155
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 3 cut(s) 767, 829, 922
Bse1I ACTGG 3 cut(s) 313, 682, 751
Bse3DI GCAATG 2 cut(s) 721, 928
Bse8I GATNNNNATC 1 cut(s) 686
BseBI CCWGG 2 cut(s) 31, 923
BseDI CCNNGG 8 cut(s) 105, 132, 391, 481, 721, 736, 1014, 1155
BseGI GGATG 2 cut(s) 477, 1114
BseJI GATNNNNATC 1 cut(s) 686
BseLI CCNNNNNNNGG 3 cut(s) 767, 829, 922
BseMI GCAATG 2 cut(s) 721, 928
BseMII CTCAG 2 cut(s) 381, 795
BseNI ACTGG 3 cut(s) 313, 682, 751
BseRI GAGGAG 1 cut(s) 770
BseSI GKGCMC 2 cut(s) 240, 1010
BseXI GCAGC 1 cut(s) 1165
BsgI GTGCAG 1 cut(s) 302
BshFI GGCC 4 cut(s) 238, 390, 720, 1164
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 3 cut(s) 767, 829, 922
BsmAI GTCTC 1 cut(s) 1115
BsnI GGCC 4 cut(s) 238, 390, 720, 1164
Bsp120I GGGCCC 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 240, 1010
Bsp143I GATC 4 cut(s) 591, 681, 819, 1171
BspACI CCGC 4 cut(s) 437, 510, 830, 833
BspANI GGCC 4 cut(s) 238, 390, 720, 1164
BspCNI CTCAG 2 cut(s) 380, 796
BspLI GGNNCC 5 cut(s) 103, 238, 759, 821, 1020
BspMAI CTGCAG 1 cut(s) 167
BspMI ACCTGC 2 cut(s) 337, 710
BspPI GGATC 4 cut(s) 689, 814, 827, 1166
BsrDI GCAATG 2 cut(s) 721, 928
BsrI ACTGG 3 cut(s) 313, 682, 751
BssECI CCNNGG 8 cut(s) 105, 132, 391, 481, 721, 736, 1014, 1155
BssMI GATC 4 cut(s) 591, 681, 819, 1171
BssSI CACGAG 1 cut(s) 1191
BssT1I CCWWGG 6 cut(s) 105, 132, 391, 481, 721, 736
Bst2BI CACGAG 1 cut(s) 1191
Bst2UI CCWGG 2 cut(s) 31, 923
Bst4CI ACNGT 7 cut(s) 280, 547, 653, 778, 788, 945, 1115
BstC8I GCNNGC 3 cut(s) 163, 1152, 1162
BstDEI CTNAG 2 cut(s) 367, 804
BstDSI CCRYGG 2 cut(s) 1014, 1155
BstENI CCTNNNNNAGG 1 cut(s) 920
BstF5I GGATG 2 cut(s) 477, 1114
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 4 cut(s) 594, 684, 822, 1174
BstMAI GTCTC 1 cut(s) 1115
BstMBI GATC 4 cut(s) 591, 681, 819, 1171
BstMWI GCNNNNNNNGC 7 cut(s) 56, 65, 711, 747, 842, 851, 1058
BstNI CCWGG 2 cut(s) 31, 923
BstNSI RCATGY 1 cut(s) 1065
BstSCI CCNGG 2 cut(s) 29, 921
BstSFI CTRYAG 1 cut(s) 163
BstSLI GKGCMC 2 cut(s) 240, 1010
BstV1I GCAGC 1 cut(s) 1165
BstV2I GAAGAC 2 cut(s) 279, 882
BstX2I RGATCY 1 cut(s) 819
BstYI RGATCY 1 cut(s) 819
BsuRI GGCC 4 cut(s) 238, 390, 720, 1164
BtgI CCRYGG 2 cut(s) 1014, 1155
BtgZI GCGATG 1 cut(s) 387
BtsCI GGATG 2 cut(s) 477, 1114
BtsI GCAGTG 2 cut(s) 172, 1047
BtsIMutI CAGTG 8 cut(s) 85, 172, 285, 552, 675, 744, 950, 1047
BveI ACCTGC 2 cut(s) 337, 710
Cac8I GCNNGC 3 cut(s) 163, 1152, 1162
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 4 cut(s) 218, 236, 237, 1018
CseI GACGC 2 cut(s) 493, 1067
CsiI ACCWGGT 1 cut(s) 29
Csp6I GTAC 2 cut(s) 411, 789
CviAII CATG 5 cut(s) 20, 150, 904, 1062, 1166
CviQI GTAC 2 cut(s) 411, 789
DdeI CTNAG 2 cut(s) 367, 804
DpnI GATC 4 cut(s) 593, 683, 821, 1173
DpnII GATC 4 cut(s) 591, 681, 819, 1171
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
EaeI YGGCCR 2 cut(s) 388, 1162
Eco130I CCWWGG 6 cut(s) 105, 132, 391, 481, 721, 736
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 218, 1018
Eco57I CTGAAG 1 cut(s) 881
EcoNI CCTNNNNNAGG 1 cut(s) 920
EcoO109I RGGNCCY 2 cut(s) 236, 237
EcoRII CCWGG 2 cut(s) 29, 921
EcoT14I CCWWGG 6 cut(s) 105, 132, 391, 481, 721, 736
EcoT38I GRGCYC 1 cut(s) 240
ErhI CCWWGG 6 cut(s) 105, 132, 391, 481, 721, 736
FaeI CATG 5 cut(s) 23, 153, 907, 1065, 1169
FatI CATG 5 cut(s) 19, 149, 903, 1061, 1165
Fnu4HI GCNGC 3 cut(s) 831, 834, 1179
FokI GGATG 2 cut(s) 464, 1121
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 3 cut(s) 831, 834, 1179
FspAI RTGCGCAY 1 cut(s) 318
FspBI CTAG 3 cut(s) 665, 737, 917
FspI TGCGCA 1 cut(s) 318
GlaI GCGC 1 cut(s) 318
GluI GCNGC 3 cut(s) 831, 834, 1179
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 4 cut(s) 238, 390, 720, 1164
HapII CCGG 1 cut(s) 221
HgaI GACGC 2 cut(s) 493, 1067
HhaI GCGC 1 cut(s) 319
Hin1II CATG 5 cut(s) 23, 153, 907, 1065, 1169
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 4 cut(s) 271, 352, 559, 603
HindII GTYRAC 4 cut(s) 271, 352, 559, 603
HinfI GANTC 3 cut(s) 470, 585, 1123
HpaI GTTAAC 1 cut(s) 352
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 6 cut(s) 271, 352, 550, 559, 603, 1018
Hpy188I TCNGA 1 cut(s) 900
Hpy188III TCNNGA 6 cut(s) 589, 644, 823, 994, 1037, 1055
Hpy8I GTNNAC 6 cut(s) 271, 352, 550, 559, 603, 1018
Hpy99I CGWCG 3 cut(s) 509, 1061, 1103
HpyAV CCTTC 4 cut(s) 395, 650, 802, 1097
HpyCH4III ACNGT 7 cut(s) 280, 547, 653, 778, 788, 945, 1115
HpyCH4IV ACGT 2 cut(s) 540, 1143
HpyCH4V TGCA 5 cut(s) 165, 233, 243, 283, 812
HpyF10VI GCNNNNNNNGC 7 cut(s) 56, 65, 711, 747, 842, 851, 1058
HpyF3I CTNAG 2 cut(s) 367, 804
HpySE526I ACGT 2 cut(s) 540, 1143
Hsp92II CATG 5 cut(s) 23, 153, 907, 1065, 1169
HspAI GCGC 1 cut(s) 317
KspAI GTTAAC 1 cut(s) 352
Kzo9I GATC 4 cut(s) 591, 681, 819, 1171
LmnI GCTCC 4 cut(s) 101, 757, 925, 1057
Lsp1109I GCAGC 1 cut(s) 1165
LweI GCATC 1 cut(s) 576
MabI ACCWGGT 1 cut(s) 29
MaeI CTAG 3 cut(s) 665, 737, 917
MaeII ACGT 2 cut(s) 540, 1143
MaeIII GTNAC 5 cut(s) 304, 512, 541, 655, 772
MalI GATC 4 cut(s) 593, 683, 821, 1173
MboI GATC 4 cut(s) 591, 681, 819, 1171
MboII GAAGA 3 cut(s) 279, 887, 887
MfeI CAATTG 1 cut(s) 406
MflI RGATCY 1 cut(s) 819
MhlI GDGCHC 2 cut(s) 240, 1010
MlsI TGGCCA 2 cut(s) 390, 1164
MluCI AATT 9 cut(s) 11, 24, 95, 406, 445, 450, 813, 862, 1127
MluNI TGGCCA 2 cut(s) 390, 1164
MlyI GAGTC 1 cut(s) 1117
MnlI CCTC 8 cut(s) 165, 305, 450, 574, 748, 799, 973, 1032
Mox20I TGGCCA 2 cut(s) 390, 1164
MscI TGGCCA 2 cut(s) 390, 1164
MseI TTAA 9 cut(s) 93, 264, 351, 449, 465, 612, 765, 972, 1002
MslI CAYNNNNRTG 3 cut(s) 148, 324, 1013
Msp20I TGGCCA 2 cut(s) 390, 1164
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 31, 923
MunI CAATTG 1 cut(s) 406
MvaI CCWGG 2 cut(s) 31, 923
MwoI GCNNNNNNNGC 7 cut(s) 56, 65, 711, 747, 842, 851, 1058
NdeII GATC 4 cut(s) 591, 681, 819, 1171
NlaIII CATG 5 cut(s) 23, 153, 907, 1065, 1169
NlaIV GGNNCC 5 cut(s) 103, 238, 759, 821, 1020
NmuCI GTSAC 4 cut(s) 512, 541, 655, 772
NsbI TGCGCA 1 cut(s) 318
NspI RCATGY 1 cut(s) 1065
OliI CACNNNNGTG 1 cut(s) 1013
PfeI GAWTC 2 cut(s) 470, 585
PkrI GCNGC 3 cut(s) 832, 835, 1180
PleI GAGTC 1 cut(s) 1117
PpsI GAGTC 1 cut(s) 1117
Psp6I CCWGG 2 cut(s) 29, 921
PspGI CCWGG 2 cut(s) 29, 921
PspN4I GGNNCC 5 cut(s) 103, 238, 759, 821, 1020
PspOMI GGGCCC 1 cut(s) 236
PspPI GGNCC 4 cut(s) 218, 236, 237, 1018
PstI CTGCAG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 819
RsaI GTAC 2 cut(s) 412, 790
RsaNI GTAC 2 cut(s) 411, 789
RseI CAYNNNNRTG 3 cut(s) 148, 324, 1013
SaqAI TTAA 9 cut(s) 93, 264, 351, 449, 465, 612, 765, 972, 1002
SatI GCNGC 3 cut(s) 831, 834, 1179
Sau3AI GATC 4 cut(s) 591, 681, 819, 1171
Sau96I GGNCC 4 cut(s) 218, 236, 237, 1018
SchI GAGTC 1 cut(s) 1117
ScrFI CCNGG 2 cut(s) 31, 923
SduI GDGCHC 2 cut(s) 240, 1010
SexAI ACCWGGT 1 cut(s) 29
SfaNI GCATC 1 cut(s) 576
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 2 cut(s) 218, 1018
SmiMI CAYNNNNRTG 3 cut(s) 148, 324, 1013
SmlI CTYRAG 2 cut(s) 1037, 1087
SmoI CTYRAG 2 cut(s) 1037, 1087
Sse9I AATT 9 cut(s) 11, 24, 95, 406, 445, 450, 813, 862, 1127
SsiI CCGC 4 cut(s) 437, 510, 830, 833
SspMI CTAG 3 cut(s) 665, 737, 917
StyD4I CCNGG 2 cut(s) 29, 921
StyI CCWWGG 6 cut(s) 105, 132, 391, 481, 721, 736
TaaI ACNGT 7 cut(s) 280, 547, 653, 778, 788, 945, 1115
TaiI ACGT 2 cut(s) 543, 1146
TaqI TCGA 6 cut(s) 494, 594, 690, 888, 1083, 1101
TaqII GACCGA 1 cut(s) 519
TasI AATT 9 cut(s) 11, 24, 95, 406, 445, 450, 813, 862, 1127
TatI WGTACW 1 cut(s) 410
TauI GCSGC 2 cut(s) 833, 836
TfiI GAWTC 2 cut(s) 470, 585
Tru1I TTAA 9 cut(s) 93, 264, 351, 449, 465, 612, 765, 972, 1002
Tru9I TTAA 9 cut(s) 93, 264, 351, 449, 465, 612, 765, 972, 1002
TscAI CASTG 8 cut(s) 85, 172, 285, 552, 682, 751, 950, 1054
TseFI GTSAC 4 cut(s) 512, 541, 655, 772
TseI GCWGC 1 cut(s) 1178
Tsp45I GTSAC 4 cut(s) 512, 541, 655, 772
TspDTI ATGAA 2 cut(s) 8, 352
TspGWI ACGGA 2 cut(s) 288, 1003
TspRI CASTG 8 cut(s) 85, 172, 285, 552, 682, 751, 950, 1054
VpaK11BI GGWCC 2 cut(s) 218, 1018
XagI CCTNNNNNAGG 1 cut(s) 920
XapI RAATTY 3 cut(s) 11, 95, 445
XceI RCATGY 1 cut(s) 1065
XcmI CCANNNNNNNNNTGG 1 cut(s) 973
XmaJI CCTAGG 1 cut(s) 736
XspI CTAG 3 cut(s) 665, 737, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.