Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0024336

Physical Location & Seq

Genomic Coordinates Forward (+)

11547314 .. 11549254

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G192000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGGAAAATTCCTTGTTGTGACAAAAACGGATTGAAAAGGGGTCCATGGACTCCGGAGGAAGATAAAAAACTGATTGATTACATTCAGAAACACGGGCATGGGAGATGGCGAACCCTACCTAAGAATGCAGGGCTAAAAAGGTGTGGAAAGAGCTGTCGCCTCAGGTGGGCAAACTATCTGAGACCTGACATTAAGAGAGGGAGGTTCTCATTTGAAGAAGAAGAGATCATAATACAGTTACACAGTGTTTTGGGAAACAAGTGGTCTGCTATTGCCTCTCGCTTGCCAGGAAGAACCGACAACGAGATCAAGAACTATTGGAACACACACATCAGAAAGAGGCTATTGAGAATGGGAATTGATCCTGTGACTCACACCCCACGTCTTGATCTTCTTGAACTCTCCTCCGCCATCTGTTCAACTCTCTACAACTCATCATCACCACACAATCCGCAGATTAATGTTCCAAATCTGCTTGGAATTGGACCTATAATGGATCCAGACCTCCTCAACTTGGCCACCACTTTCCTATCATGCCAGCAAAACCAAATTGGTTTTTCACAAATTAATCAAACCCAATTAACCCAACCAAGCCAGATCCAAAACCCGGTTCAAGAAATCCAATCTTGCACAACATCAAACACTTTAAATGTCCCATTTCTTAGCTACCCGGGTTCTTCAAATGTAGCTGGCCAGGGTTTTGTTCCTACAACAAACCAGTTGGGTTCTTATGACTCTAAATACGAATCCATGATTAGCCACATTCCACACCAAAACTACAACCAGCCATGCACTTCCAATAACGTGAATCAATATCAAAACTTTCAGAACATGAGTAGTTTTGGTTCAGTTCTATCGTCAACACCTTCGTCAAGCCCGGCAACCACGTTGAATTCGTCACCGGCTATAACCTACATCAATAGTAGCACTGAAGATGAGAGGGATAGTTTCTGCAGCAATATCTTAATGTACCATGACATTCCCAATGCCCTGAACGCCAACAAACTTTTGTACCAAAAAAACATCATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

346

Amino Acids

38.77

Weight (kDa)

8.9

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024336)

Species	Orthologous Gene IDs
malus_domestica	MD03G1217300.v1.1
prunus_persica	Prupe.4G192000_v2.0.a1
pyrus_communis	pycom03g16670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	2 cut(s)	411, 455
AclWI	GGATC	4 cut(s)	359, 494, 507, 595
AcoI	YGGCCR	2 cut(s)	519, 694
AcsI	RAATTY	2 cut(s)	9, 895
AcuI	CTGAAG	1 cut(s)	954
AfaI	GTAC	2 cut(s)	974, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	169, 517, 610
AgsI	TTSAA	7 cut(s)	37, 218, 401, 423, 617, 684, 895
AjiI	CACGTC	1 cut(s)	386
AjnI	CCWGG	2 cut(s)	289, 696
AjuI	GAANNNNNNNTTGG	2 cut(s)	597, 629
AluBI	AGCT	3 cut(s)	156, 669, 692
AluI	AGCT	3 cut(s)	156, 669, 692
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	4 cut(s)	359, 494, 507, 595
Ama87I	CYCGRG	1 cut(s)	673
Aor13HI	TCCGGA	1 cut(s)	55
AoxI	GGCC	2 cut(s)	519, 694
ApeKI	GCWGC	1 cut(s)	957
ApoI	RAATTY	2 cut(s)	9, 895
AseI	ATTAAT	2 cut(s)	462, 570
AspS9I	GGNCC	2 cut(s)	44, 488
AsuC2I	CCSGG	4 cut(s)	611, 674, 675, 881
AsuHPI	GGTGA	2 cut(s)	435, 894
AvaI	CYCGRG	1 cut(s)	673
AvaII	GGWCC	2 cut(s)	44, 488
AxyI	CCTNAGG	1 cut(s)	164
BaeI	ACNNNNGTAYC	2 cut(s)	998, 1031
BalI	TGGCCA	2 cut(s)	521, 696
BamHI	GGATCC	1 cut(s)	499
BbvI	GCAGC	1 cut(s)	969
BccI	CCATC	2 cut(s)	102, 422
BciT130I	CCWGG	2 cut(s)	291, 698
BcnI	CCSGG	4 cut(s)	611, 674, 675, 881
BcoDI	GTCTC	1 cut(s)	178
BfmI	CTRYAG	1 cut(s)	955
BisI	GCNGC	1 cut(s)	958
BlsI	GCNGC	1 cut(s)	959
Bme1390I	CCNGG	6 cut(s)	291, 611, 674, 675, 698, 881
Bme18I	GGWCC	2 cut(s)	44, 488
BmeT110I	CYCGRG	1 cut(s)	673
BmgBI	CACGTC	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	44, 488
BmiI	GGNNCC	2 cut(s)	45, 501
BmrFI	CCNGG	6 cut(s)	291, 611, 674, 675, 698, 881
BpuMI	CCSGG	4 cut(s)	611, 674, 675, 881
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	3 cut(s)	47, 673, 697
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 517, 610
Bse118I	RCCGGY	1 cut(s)	904
Bse1I	ACTGG	1 cut(s)	721
Bse21I	CCTNAGG	1 cut(s)	164
BseAI	TCCGGA	1 cut(s)	55
BseBI	CCWGG	2 cut(s)	291, 698
BseDI	CCNNGG	3 cut(s)	47, 673, 697
BseLI	CCNNNNNNNGG	3 cut(s)	169, 517, 610
BseMII	CTCAG	2 cut(s)	173, 178
BseNI	ACTGG	1 cut(s)	721
BseRI	GAGGAG	2 cut(s)	397, 500
BseXI	GCAGC	1 cut(s)	969
BshFI	GGCC	2 cut(s)	521, 696
BsiHKCI	CYCGRG	1 cut(s)	673
BsiSI	CCGG	5 cut(s)	56, 611, 674, 881, 905
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	3 cut(s)	169, 517, 610
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	641
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	521, 696
Bso31I	GGTCTC	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	673
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	6 cut(s)	228, 309, 364, 391, 499, 600
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	411, 455
BspANI	GGCC	2 cut(s)	521, 696
BspCNI	CTCAG	2 cut(s)	174, 177
BspEI	TCCGGA	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	45, 501
BspMAI	CTGCAG	1 cut(s)	959
BspPI	GGATC	4 cut(s)	359, 494, 507, 595
BspTNI	GGTCTC	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	904
BsrI	ACTGG	1 cut(s)	721
BssAI	RCCGGY	1 cut(s)	904
BssECI	CCNNGG	3 cut(s)	47, 673, 697
BssMI	GATC	6 cut(s)	228, 309, 364, 391, 499, 600
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	291, 698
Bst4CI	ACNGT	2 cut(s)	240, 248
Bst6I	CTCTTC	1 cut(s)	219
BstC8I	GCNNGC	3 cut(s)	287, 542, 694
BstDEI	CTNAG	4 cut(s)	123, 164, 182, 665
BstDSI	CCRYGG	1 cut(s)	47
BstKTI	GATC	6 cut(s)	231, 312, 367, 394, 502, 603
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	6 cut(s)	228, 309, 364, 391, 499, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	998
BstNI	CCWGG	2 cut(s)	291, 698
BstSCI	CCNGG	6 cut(s)	289, 609, 672, 673, 696, 879
BstSFI	CTRYAG	1 cut(s)	955
BstV1I	GCAGC	1 cut(s)	969
BstX2I	RGATCY	2 cut(s)	499, 600
BstYI	RGATCY	2 cut(s)	499, 600
Bsu36I	CCTNAGG	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	521, 696
BtgI	CCRYGG	1 cut(s)	47
BtrI	CACGTC	1 cut(s)	386
BtsIMutI	CAGTG	2 cut(s)	253, 930
Cac8I	GCNNGC	3 cut(s)	287, 542, 694
Cfr10I	RCCGGY	1 cut(s)	904
Cfr13I	GGNCC	2 cut(s)	44, 488
Cfr9I	CCCGGG	1 cut(s)	673
Csp6I	GTAC	2 cut(s)	973, 1015
CviAII	CATG	7 cut(s)	48, 101, 537, 754, 792, 835, 977
CviQI	GTAC	2 cut(s)	973, 1015
DdeI	CTNAG	4 cut(s)	123, 164, 182, 665
DpnI	GATC	6 cut(s)	230, 311, 366, 393, 501, 602
DpnII	GATC	6 cut(s)	228, 309, 364, 391, 499, 600
DraI	TTTAAA	1 cut(s)	651
EaeI	YGGCCR	2 cut(s)	519, 694
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	44, 488
Eco57I	CTGAAG	1 cut(s)	954
Eco81I	CCTNAGG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	673
EcoRI	GAATTC	1 cut(s)	895
EcoRII	CCWGG	2 cut(s)	289, 696
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	7 cut(s)	51, 104, 540, 757, 795, 838, 980
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	7 cut(s)	47, 100, 536, 753, 791, 834, 976
Fnu4HI	GCNGC	1 cut(s)	958
Fsp4HI	GCNGC	1 cut(s)	958
GluI	GCNGC	1 cut(s)	958
HaeIII	GGCC	2 cut(s)	521, 696
HapII	CCGG	5 cut(s)	56, 611, 674, 881, 905
Hin1II	CATG	7 cut(s)	51, 104, 540, 757, 795, 838, 980
HincII	GTYRAC	1 cut(s)	864
HindII	GTYRAC	1 cut(s)	864
HinfI	GANTC	5 cut(s)	52, 373, 737, 749, 811
HpaII	CCGG	5 cut(s)	56, 611, 674, 881, 905
HphI	GGTGA	2 cut(s)	435, 894
Hpy166II	GTNNAC	1 cut(s)	864
Hpy188I	TCNGA	4 cut(s)	90, 183, 338, 831
Hpy188III	TCNNGA	6 cut(s)	56, 313, 389, 398, 503, 617
Hpy8I	GTNNAC	1 cut(s)	864
HpyAV	CCTTC	1 cut(s)	879
HpyCH4III	ACNGT	2 cut(s)	240, 248
HpyCH4IV	ACGT	3 cut(s)	385, 807, 890
HpyCH4V	TGCA	4 cut(s)	131, 633, 795, 957
HpyF10VI	GCNNNNNNNGC	1 cut(s)	998
HpyF3I	CTNAG	4 cut(s)	123, 164, 182, 665
HpySE526I	ACGT	3 cut(s)	385, 807, 890
Hsp92II	CATG	7 cut(s)	51, 104, 540, 757, 795, 838, 980
Kpn2I	TCCGGA	1 cut(s)	55
Kzo9I	GATC	6 cut(s)	228, 309, 364, 391, 499, 600
Lsp1109I	GCAGC	1 cut(s)	969
MaeII	ACGT	3 cut(s)	385, 807, 890
MaeIII	GTNAC	4 cut(s)	20, 240, 370, 900
MalI	GATC	6 cut(s)	230, 311, 366, 393, 501, 602
MboI	GATC	6 cut(s)	228, 309, 364, 391, 499, 600
MboII	GAAGA	8 cut(s)	74, 230, 233, 236, 306, 386, 672, 947
MflI	RGATCY	2 cut(s)	499, 600
MlsI	TGGCCA	2 cut(s)	521, 696
MluCI	AATT	8 cut(s)	9, 360, 483, 552, 567, 581, 895, 1033
MluNI	TGGCCA	2 cut(s)	521, 696
MlyI	GAGTC	3 cut(s)	46, 367, 731
Mox20I	TGGCCA	2 cut(s)	521, 696
MroI	TCCGGA	1 cut(s)	55
MscI	TGGCCA	2 cut(s)	521, 696
MseI	TTAA	7 cut(s)	195, 462, 570, 584, 650, 968, 1036
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	2 cut(s)	521, 696
MspI	CCGG	5 cut(s)	56, 611, 674, 881, 905
MspR9I	CCNGG	6 cut(s)	291, 611, 674, 675, 698, 881
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	2 cut(s)	291, 698
MwoI	GCNNNNNNNGC	1 cut(s)	998
NciI	CCSGG	4 cut(s)	611, 674, 675, 881
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	6 cut(s)	228, 309, 364, 391, 499, 600
NlaIII	CATG	7 cut(s)	51, 104, 540, 757, 795, 838, 980
NlaIV	GGNNCC	2 cut(s)	45, 501
NmuCI	GTSAC	3 cut(s)	20, 370, 900
PcsI	WCGNNNNNNNCGW	1 cut(s)	896
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	749, 811
PkrI	GCNGC	1 cut(s)	959
PleI	GAGTC	3 cut(s)	46, 367, 731
PpsI	GAGTC	3 cut(s)	46, 367, 731
PshBI	ATTAAT	2 cut(s)	462, 570
Psp6I	CCWGG	2 cut(s)	289, 696
PspGI	CCWGG	2 cut(s)	289, 696
PspN4I	GGNNCC	2 cut(s)	45, 501
PspPI	GGNCC	2 cut(s)	44, 488
PsrI	GAACNNNNNNTAC	2 cut(s)	832, 864
PstI	CTGCAG	1 cut(s)	959
PsuI	RGATCY	2 cut(s)	499, 600
RsaI	GTAC	2 cut(s)	974, 1016
RsaNI	GTAC	2 cut(s)	973, 1015
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	7 cut(s)	195, 462, 570, 584, 650, 968, 1036
SatI	GCNGC	1 cut(s)	958
Sau3AI	GATC	6 cut(s)	228, 309, 364, 391, 499, 600
Sau96I	GGNCC	2 cut(s)	44, 488
SchI	GAGTC	3 cut(s)	46, 367, 731
ScrFI	CCNGG	6 cut(s)	291, 611, 674, 675, 698, 881
SfcI	CTRYAG	1 cut(s)	955
SinI	GGWCC	2 cut(s)	44, 488
SmaI	CCCGGG	1 cut(s)	675
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	8 cut(s)	9, 360, 483, 552, 567, 581, 895, 1033
SsiI	CCGC	2 cut(s)	411, 455
StyD4I	CCNGG	6 cut(s)	289, 609, 672, 673, 696, 879
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	240, 248
TaiI	ACGT	3 cut(s)	388, 810, 893
TasI	AATT	8 cut(s)	9, 360, 483, 552, 567, 581, 895, 1033
TfiI	GAWTC	2 cut(s)	749, 811
Tru1I	TTAA	7 cut(s)	195, 462, 570, 584, 650, 968, 1036
Tru9I	TTAA	7 cut(s)	195, 462, 570, 584, 650, 968, 1036
TscAI	CASTG	2 cut(s)	253, 937
TseFI	GTSAC	3 cut(s)	20, 370, 900
TseI	GCWGC	1 cut(s)	957
Tsp45I	GTSAC	3 cut(s)	20, 370, 900
TspGWI	ACGGA	1 cut(s)	45
TspMI	CCCGGG	1 cut(s)	673
TspRI	CASTG	2 cut(s)	253, 937
VpaK11BI	GGWCC	2 cut(s)	44, 488
VspI	ATTAAT	2 cut(s)	462, 570
XapI	RAATTY	2 cut(s)	9, 895
XmaI	CCCGGG	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.