Prupe.4G221900_v2.0.a1

Small ubiquitinrelated modifier

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
13933946 .. 13935293
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G221900.2

Sequence Viewer

Length: 318 bp
ATGGGGATCGGTCGCAGAGTTCCAGTCGGACCACAGAGAAACATTTTGGGCGTACCAAAACAGCGTCCCTCCTACATTACGCTCTTTGTCCGTGACCACCTGAGTGGAAATGATTTAGTGTTCAGGATGAAGAGAAGCACTCAGCTGAGGAGGCTTAAGATTGCTTACTGTGATCGAAAGTCGGTAGAGGTCTACCGTATGAGATTCGCTTACTATGGTGTTCATCTTATATCCAGCCGGACTCCAGATGAGTATGATCTTGAGAATGGAGATGTAATTGATGCACTTCCGGTGCTAAGAGGAGGAGGAGCGCCATGA

Protein Analysis

106

Amino Acids

11.99

Weight (kDa)

10.15

Isoelectric Point (pI)

55.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024544)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 192
AclWI GGATC 1 cut(s) 14
AfaI GTAC 1 cut(s) 54
AflII CTTAAG 1 cut(s) 155
AleI CACNNNNGTG 1 cut(s) 102
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
AlwI GGATC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 29
AvaII GGWCC 1 cut(s) 29
BbvCI CCTCAGC 1 cut(s) 146
BfoI RGCGCY 1 cut(s) 314
BfrI CTTAAG 1 cut(s) 155
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmsI GCATC 1 cut(s) 271
BplI GAGNNNNNCTC 2 cut(s) 124, 156
BpmI CTGGAG 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 281
BsaWI WCCGGW 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 23
BseGI GGATG 1 cut(s) 132
BseMII CTCAG 3 cut(s) 92, 137, 155
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 3 cut(s) 163, 315, 318
Bsh1285I CGRYCG 1 cut(s) 13
BsiEI CGRYCG 1 cut(s) 13
BsiSI CCGG 2 cut(s) 238, 290
BslFI GGGAC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 51
Bsp143I GATC 3 cut(s) 6, 172, 256
BspCNI CTCAG 3 cut(s) 93, 138, 154
BspPI GGATC 1 cut(s) 14
BspTI CTTAAG 1 cut(s) 155
BsrI ACTGG 1 cut(s) 23
BssMI GATC 3 cut(s) 6, 172, 256
Bst4CI ACNGT 2 cut(s) 170, 197
Bst6I CTCTTC 1 cut(s) 125
BstAFI CTTAAG 1 cut(s) 155
BstDEI CTNAG 4 cut(s) 101, 141, 146, 296
BstF5I GGATG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 3 cut(s) 9, 175, 259
BstMBI GATC 3 cut(s) 6, 172, 256
BstMCI CGRYCG 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstXI CCANNNNNNTGG 1 cut(s) 104
BtsCI GGATG 1 cut(s) 132
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 29
CseI GACGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 53
CviAII CATG 1 cut(s) 315
CviJI RGCY 3 cut(s) 145, 154, 237
CviKI_1 RGCY 3 cut(s) 145, 154, 237
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 4 cut(s) 101, 141, 146, 296
DpnI GATC 3 cut(s) 8, 174, 258
DpnII GATC 3 cut(s) 6, 172, 256
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 29
FaeI CATG 1 cut(s) 318
FaiI YATR 5 cut(s) 200, 216, 230, 255, 316
FaqI GGGAC 1 cut(s) 51
FatI CATG 1 cut(s) 314
FblI GTMKAC 1 cut(s) 192
FokI GGATG 1 cut(s) 139
GlaI GCGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 314
HapII CCGG 2 cut(s) 238, 290
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 313
Hin1II CATG 1 cut(s) 318
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HinfI GANTC 2 cut(s) 204, 241
HpaII CCGG 2 cut(s) 238, 290
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 29
Hpy188III TCNNGA 3 cut(s) 124, 245, 260
Hpy8I GTNNAC 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 170, 197
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 4 cut(s) 101, 141, 146, 296
Hsp92II CATG 1 cut(s) 318
HspAI GCGC 1 cut(s) 311
Kzo9I GATC 3 cut(s) 6, 172, 256
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 7 cut(s) 36, 109, 113, 247, 251, 258, 303
LweI GCATC 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 92
MalI GATC 3 cut(s) 8, 174, 258
MboI GATC 3 cut(s) 6, 172, 256
MboII GAAGA 1 cut(s) 142
MluCI AATT 1 cut(s) 276
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 7
MnlI CCTC 7 cut(s) 79, 141, 144, 181, 293, 296, 299
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 145
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 2 cut(s) 238, 290
MwoI GCNNNNNNNGC 1 cut(s) 151
NdeII GATC 3 cut(s) 6, 172, 256
NlaIII CATG 1 cut(s) 318
NmuCI GTSAC 1 cut(s) 92
OliI CACNNNNGTG 1 cut(s) 102
PfeI GAWTC 1 cut(s) 204
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 145
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 3 cut(s) 6, 172, 256
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 1 cut(s) 235
SetI ASST 3 cut(s) 102, 147, 192
SfaNI GCATC 1 cut(s) 271
SgeI CNNG 9 cut(s) 35, 104, 112, 136, 246, 250, 257, 272, 302
SinI GGWCC 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 2 cut(s) 155, 260
SmoI CTYRAG 2 cut(s) 155, 260
Sse9I AATT 1 cut(s) 276
TaaI ACNGT 2 cut(s) 170, 197
TaqI TCGA 1 cut(s) 175
TasI AATT 1 cut(s) 276
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 2 cut(s) 143, 212
TspGWI ACGGA 1 cut(s) 80
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.