Prupe.4G222000_v2.0.a1

Small ubiquitinrelated modifier

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
13936440 .. 13937556
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G222000.1

Sequence Viewer

Length: 300 bp
ATGGGGGTAGGTCGCAGAGTCCCAGTCGGAGCACAGAGAAATATGTTGGGCGTCCCAAAGCGGCCCACCCGCATCCTGCTCTTAGTGAAGGACCCGTGGGAAAATTTTATAGTGTTCAGGATCAAGAGAAGCACTCAACTGAAGAAGCTTCTGATTGCTTACTGTGATAAGAAGTCGGTGGAGTTGGACAATATGAGATTCGTGCACAATGGTCGTCTTGTTAGACCCAACCTGACCCCAGATGAGCATGAAATGGAAAGTGGGGATGTAATTTATGCATTTCCGGTCCTATTAGGATGA

Protein Analysis

100

Amino Acids

11.4

Weight (kDa)

10.09

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024544)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 61, 70
AclWI GGATC 1 cut(s) 128
AcsI RAATTY 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 161
AcyI GRCGYC 1 cut(s) 51
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw21I GWGCWC 2 cut(s) 34, 207
Alw44I GTGCAC 1 cut(s) 203
AlwI GGATC 1 cut(s) 128
AoxI GGCC 1 cut(s) 62
ApaLI GTGCAC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 103
AspS9I GGNCC 3 cut(s) 63, 91, 286
AvaII GGWCC 2 cut(s) 91, 286
BaeGI GKGCMC 1 cut(s) 207
Bbv12I GWGCWC 2 cut(s) 34, 207
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme18I GGWCC 2 cut(s) 91, 286
BmgT120I GGNCC 3 cut(s) 63, 91, 286
BmiI GGNNCC 1 cut(s) 93
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 17
BplI GAGNNNNNCTC 2 cut(s) 118, 150
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 283
Bse1I ACTGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 2 cut(s) 72, 271
BseNI ACTGG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 207
BshFI GGCC 1 cut(s) 64
BsiHKAI GWGCWC 2 cut(s) 34, 207
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 2 cut(s) 5, 38
BsmFI GGGAC 2 cut(s) 5, 38
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 34, 207
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 2 cut(s) 61, 70
BspANI GGCC 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 128
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 1 cut(s) 120
BssNI GRCGYC 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 95
BstF5I GGATG 2 cut(s) 72, 271
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 207
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 95
BtsCI GGATG 2 cut(s) 72, 271
Cfr13I GGNCC 3 cut(s) 63, 91, 286
CseI GACGC 1 cut(s) 40
CviAII CATG 1 cut(s) 248
CviJI RGCY 2 cut(s) 64, 148
CviKI_1 RGCY 2 cut(s) 64, 148
DdeI CTNAG 1 cut(s) 82
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eco47I GGWCC 2 cut(s) 91, 286
Eco57I CTGAAG 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 280
FaeI CATG 1 cut(s) 251
FaiI YATR 5 cut(s) 44, 110, 194, 249, 276
FaqI GGGAC 2 cut(s) 5, 38
FatI CATG 1 cut(s) 247
FauI CCCGC 1 cut(s) 77
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 2 cut(s) 59, 278
Fsp4HI GCNGC 1 cut(s) 62
GluI GCNGC 1 cut(s) 62
HaeIII GGCC 1 cut(s) 64
HapII CCGG 1 cut(s) 284
HgaI GACGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 1 cut(s) 251
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 2 cut(s) 18, 198
HpaII CCGG 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 29, 153
Hpy188III TCNNGA 2 cut(s) 118, 124
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 2 cut(s) 205, 278
HpyF3I CTNAG 1 cut(s) 82
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 1 cut(s) 251
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 5 cut(s) 36, 89, 103, 245, 252
LweI GCATC 1 cut(s) 81
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 34, 207
MluCI AATT 2 cut(s) 103, 270
MlyI GAGTC 1 cut(s) 27
MmeI TCCRAC 2 cut(s) 7, 165
Mph1103I ATGCAT 1 cut(s) 280
MspI CCGG 1 cut(s) 284
NdeII GATC 1 cut(s) 120
NlaIII CATG 1 cut(s) 251
NlaIV GGNNCC 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 280
PfeI GAWTC 1 cut(s) 198
PkrI GCNGC 1 cut(s) 63
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 3 cut(s) 63, 91, 286
PspPPI RGGWCCY 1 cut(s) 91
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 3 cut(s) 63, 91, 286
SchI GAGTC 1 cut(s) 27
SduI GDGCHC 2 cut(s) 34, 207
SetI ASST 3 cut(s) 13, 150, 234
SfaNI GCATC 1 cut(s) 81
SinI GGWCC 2 cut(s) 91, 286
Sse9I AATT 2 cut(s) 103, 270
SsiI CCGC 2 cut(s) 61, 70
TaaI ACNGT 1 cut(s) 164
TasI AATT 2 cut(s) 103, 270
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 264
VneI GTGCAC 1 cut(s) 203
VpaK11BI GGWCC 2 cut(s) 91, 286
XapI RAATTY 1 cut(s) 103
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.