Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0022476

Physical Location & Seq

Genomic Coordinates Forward (+)

16432038 .. 16433249

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G247200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGATAGTAACTGTTAAATTTTGGGCTGTTGTCAACAAAGGACATTTCCAATCCTACAAGAAACAAAAATTTCCATGCGTTAACTTACAAAGTCATAAGTCGCTGCAGTATATTATAGACTTTGTACACCCAATTAATGATGTCTTCGCTTCGGTTTTCTTTTGTGGTAAAATCTCTCTTCGACGTATTGATCAGTTTGAAGAATTCAGAATATGTGGCTGTGGTTGTTTCCCACTTTTATCAGTTTACAATCTAAATCTATCAAAAACCAGGCACGTTCAAGAAGAAATAAACATGCTACTGCAGTCTGCTCACCCACTGTCTCATGGCTTCCTTTTCATCCTCTTGTTCTCTTCCATTATTTCTACAAATATTCATGCATGCAACCAAACTGAATGCAGAACCCCCACGCCCTTCTCCCCCAATACGTCTTCTCATCCTATAAATTGGACTTCCCTTAGTTCTTTCCATTTAGTGGGCATCCCTTATCGTCACCAAGGTCGGGCCCTCAATGGAGGAGACGCACAAGGGGATGGCACTAAAGGCGGGATCATTGCAAAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0043207 GO:0045087 GO:0048507 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

189

Amino Acids

21.14

Weight (kDa)

9.17

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022476)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G246300_v2.0.a1 Prupe.4G246300_v2.0.a1 Prupe.4G246700_v2.0.a1 Prupe.4G247200_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	475
AciI	CCGC	1 cut(s)	546
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	3 cut(s)	17, 68, 203
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	475, 502
AgsI	TTSAA	2 cut(s)	200, 281
AjnI	CCWGG	1 cut(s)	269
Alw26I	GTCTC	2 cut(s)	327, 513
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	1 cut(s)	504
ApaI	GGGCCC	1 cut(s)	508
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	3 cut(s)	17, 68, 203
AseI	ATTAAT	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	504, 505
AsuHPI	GGTGA	2 cut(s)	305, 485
BaeGI	GKGCMC	1 cut(s)	508
BanII	GRGCYC	1 cut(s)	508
BbsI	GAAGAC	2 cut(s)	136, 423
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	527
BciT130I	CCWGG	1 cut(s)	271
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	327, 513
BfmI	CTRYAG	2 cut(s)	104, 302
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	504, 505
BmiI	GGNNCC	1 cut(s)	506
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	489
BpiI	GAAGAC	2 cut(s)	136, 423
BsaJI	CCNNGG	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	2 cut(s)	475, 502
Bse3DI	GCAATG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	4 cut(s)	339, 436, 480, 538
BseLI	CCNNNNNNNGG	2 cut(s)	475, 502
BseMI	GCAATG	1 cut(s)	552
BseRI	GAGGAG	1 cut(s)	531
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	1 cut(s)	90
BshFI	GGCC	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	475, 502
BsmAI	GTCTC	2 cut(s)	327, 513
BsmBI	CGTCTC	1 cut(s)	513
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	506
Bsp120I	GGGCCC	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	190, 549
BspACI	CCGC	1 cut(s)	546
BspANI	GGCC	1 cut(s)	506
BspLI	GGNNCC	1 cut(s)	506
BspMAI	CTGCAG	2 cut(s)	108, 306
BspPI	GGATC	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	552
BsrGI	TGTACA	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	2 cut(s)	190, 549
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	2 cut(s)	13, 321
Bst6I	CTCTTC	2 cut(s)	183, 358
BstAUI	TGTACA	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	2 cut(s)	458, 564
BstF5I	GGATG	4 cut(s)	339, 436, 480, 538
BstKTI	GATC	2 cut(s)	193, 552
BstMAI	GTCTC	2 cut(s)	327, 513
BstMBI	GATC	2 cut(s)	190, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	543
BstNI	CCWGG	1 cut(s)	271
BstNSI	RCATGY	2 cut(s)	298, 384
BstSCI	CCNGG	1 cut(s)	269
BstSFI	CTRYAG	2 cut(s)	104, 302
BstSLI	GKGCMC	1 cut(s)	508
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	2 cut(s)	136, 423
BsuRI	GGCC	1 cut(s)	506
BtsCI	GGATG	4 cut(s)	339, 436, 480, 538
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	382
Cfr13I	GGNCC	2 cut(s)	504, 505
CseI	GACGC	1 cut(s)	530
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	5 cut(s)	75, 295, 326, 377, 381
CviJI	RGCY	5 cut(s)	26, 219, 330, 506, 562
CviKI_1	RGCY	5 cut(s)	26, 219, 330, 506, 562
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	2 cut(s)	458, 564
DpnI	GATC	2 cut(s)	192, 551
DpnII	GATC	2 cut(s)	190, 549
Eam1104I	CTCTTC	2 cut(s)	183, 358
EarI	CTCTTC	2 cut(s)	183, 358
Eco130I	CCWWGG	1 cut(s)	496
Eco24I	GRGCYC	1 cut(s)	508
EcoO109I	RGGNCCY	1 cut(s)	505
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	496
EcoT22I	ATGCAT	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	496
Esp3I	CGTCTC	1 cut(s)	513
FaeI	CATG	5 cut(s)	78, 298, 329, 380, 384
FatI	CATG	5 cut(s)	74, 294, 325, 376, 380
FauI	CCCGC	1 cut(s)	539
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	4 cut(s)	326, 423, 467, 545
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	506
HgaI	GACGC	1 cut(s)	530
Hin1II	CATG	5 cut(s)	78, 298, 329, 380, 384
HincII	GTYRAC	2 cut(s)	34, 82
HindII	GTYRAC	2 cut(s)	34, 82
HpaI	GTTAAC	1 cut(s)	82
HphI	GGTGA	2 cut(s)	305, 485
Hpy166II	GTNNAC	4 cut(s)	34, 82, 127, 247
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	4 cut(s)	34, 82, 127, 247
Hpy99I	CGWCG	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	2 cut(s)	13, 321
HpyCH4IV	ACGT	3 cut(s)	184, 276, 428
HpyCH4V	TGCA	6 cut(s)	106, 304, 380, 384, 399, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	543
HpyF3I	CTNAG	2 cut(s)	458, 564
HpySE526I	ACGT	3 cut(s)	184, 276, 428
Hsp92II	CATG	5 cut(s)	78, 298, 329, 380, 384
Ksp22I	TGATCA	1 cut(s)	190
KspAI	GTTAAC	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	190, 549
LpnPI	CCDG	2 cut(s)	256, 283
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	1 cut(s)	489
MaeII	ACGT	3 cut(s)	184, 276, 428
MaeIII	GTNAC	2 cut(s)	7, 491
MalI	GATC	2 cut(s)	192, 551
MboI	GATC	2 cut(s)	190, 549
MboII	GAAGA	6 cut(s)	136, 170, 212, 296, 345, 423
MhlI	GDGCHC	1 cut(s)	508
MluCI	AATT	5 cut(s)	17, 68, 132, 203, 445
MnlI	CCTC	3 cut(s)	353, 509, 518
Mph1103I	ATGCAT	1 cut(s)	382
MseI	TTAA	3 cut(s)	15, 81, 135
MspR9I	CCNGG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	1 cut(s)	543
NdeII	GATC	2 cut(s)	190, 549
NlaIII	CATG	5 cut(s)	78, 298, 329, 380, 384
NlaIV	GGNNCC	1 cut(s)	506
NmuCI	GTSAC	1 cut(s)	491
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	2 cut(s)	298, 384
PaeI	GCATGC	1 cut(s)	384
PctI	GAATGC	1 cut(s)	401
PflMI	CCANNNNNTGG	1 cut(s)	475
PkrI	GCNGC	1 cut(s)	105
PshBI	ATTAAT	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	506
PspOMI	GGGCCC	1 cut(s)	504
PspPI	GGNCC	2 cut(s)	504, 505
PstI	CTGCAG	2 cut(s)	108, 306
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	15, 81, 135
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	2 cut(s)	190, 549
Sau96I	GGNCC	2 cut(s)	504, 505
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	508
SetI	ASST	4 cut(s)	187, 279, 431, 502
SfaNI	GCATC	1 cut(s)	489
SfcI	CTRYAG	2 cut(s)	104, 302
SphI	GCATGC	1 cut(s)	384
Sse9I	AATT	5 cut(s)	17, 68, 132, 203, 445
SsiI	CCGC	1 cut(s)	546
SspI	AATATT	1 cut(s)	373
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	2 cut(s)	13, 321
TaiI	ACGT	3 cut(s)	187, 279, 431
TaqI	TCGA	1 cut(s)	181
TasI	AATT	5 cut(s)	17, 68, 132, 203, 445
TatI	WGTACW	1 cut(s)	124
Tru1I	TTAA	3 cut(s)	15, 81, 135
Tru9I	TTAA	3 cut(s)	15, 81, 135
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	2 cut(s)	328, 365
TspRI	CASTG	1 cut(s)	324
Van91I	CCANNNNNTGG	1 cut(s)	475
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	3 cut(s)	17, 68, 203
XceI	RCATGY	2 cut(s)	298, 384
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.