Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0024457

Physical Location & Seq

Genomic Coordinates Reverse (-)

16608772 .. 16611634

Gene Structure 2863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G248700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

ATGGCTGCTTCTTCTGCTGCTGCTGTCCACCCTACACAAAATTATGATGTTTTTCTTAGTTTCAGAGTGAAGAAAATCAAAACCTACATAGACGACATACTTGAGAGAGGTGATGAAATTGCACCTGCCCTTCTTGAAGCCATTGAGAAATTAAAGCTTTCGGTTATCATTTTCTCAAAAAACTATGCTTCTTCCACATGGTGTCTGGATGAACTTGCACATATATTAGGATGCAAGGAAAGATTTGGACAGTTTGTTGTATACCTATTTTTTACGACATCGATCCATCACATGTACGAAAGCAGCAAGGAAGTTATGCTGATGCATTTTCTTAACTTGAAGAACGTTTCAAGGACAGTATTGAAAAGGACGGATGTGGATTTTGTTGAGAAAGTTGTGGAAGGCATTTGGACCAAATTGATTCGCAAATTGTCAAGTAACTTAGAGGGTTTGGTTGGAATTGAAAGCCACATCCAGCACTTTGAATCATTATTATGCATTAATGATTCCCTAGATGTTTGCACTGTAGACATTTGGGCTGCTTGTTTTCTCGGAAATGTCAGGGAGAAATCAGAACAAAAGGCAGTTAGATCACTTACTTGGAGATGGTATGGGTGTCGGCGCGGAAGTAGAATCATTATAACAACCAGAGATAGGCGCCTAGTAAAGAAAAAGGTTGAAGCTGATAAGATTTATGAGGTTGAGGGATTACATTTTGATGAAGCTCTACAGCTCTTTCATTCACATGCCTTCAAAAGTATCCCTACCAGAACAGATTATACAGAGTTTTCATTAATGGTGGTATGTTATGCTAGAGGCATACGATTAGCTGTTATAATTTTGGGTTCCTTGTTTCTTCACTGCGAGAGTAAAGAAGACTGGGAAGATGAATTGAACAAATTGAAAACATTTCCCAGCAAAAAAATTCAGAATGTGTTCTGGCTAAGTTATGATAGATTGGAAGAAAATGAGGAGATATTTCTTGATATAGATATCTGTCATGTATTGAAAAATAAAACGAACCTTGGGAACTTAAAACTGATCGATCTTAGTTATTCCTATCATCTGGCTGAAGTTCCAGATCTCTCTCATAGTCGAAAGATTCAGCATATAAATCATGAATGTTGTGCAAGTTTGGTTCAAATTCAGTCATATTTTCAATATCTTGACAAGCTTACTTATATTCATATGGGAAGCTGCTGGAATCTCAAATATCTTCCGGAGAAGCCAGGCAATGTTGAATTCTTAAATTTAAAGAGGGCTGCAATAAAGGAATTGCCTTCGTCAGTTTGGTCTAACGAAAAAATTTCTTTCTTGGATACTGAATATTGTGAATACCTTGAGCATCTCCCAAGCAGCAGCTGTAATCTGAAATTCTGTTCAGAATTTTCTGTTATGTGCTGCTCATCTCTCGGCAAGTTTTTTGAGCTTCCTAGGGAGATTAAACTTTTAAAGTTGACTGAGGCAGCAACAGAAGTATTGCCCTCATCAATCGAATGTCTCTATGGTCTACAATCAATTGAGCTTAGAGAGTGTAAGAGGTTTGTGAGTCTACCAACTAGCATTTGTAAGTTGAAATCTCTTGAGAAACTTCTCTCTGGTTGCTGTGAATTCAAACACTTCCCAGAAATCTTGGAGCCTATGGGACGTCTGGAATTTCTTGGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

557

Amino Acids

64.29

Weight (kDa)

6.57

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024457)

Species	Orthologous Gene IDs
malus_domestica	MD05G1148200.v1.1
prunus_persica	Prupe.4G248700_v2.0.a1
pyrus_communis	pycom05g13340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	641, 836, 1669
AarI	CACCTGC	1 cut(s)	133
AatII	GACGTC	1 cut(s)	1651
Acc36I	ACCTGC	1 cut(s)	133
AccB1I	GGYRCC	1 cut(s)	657
AccI	GTMKAC	4 cut(s)	261, 528, 1510, 1552
AccII	CGCG	1 cut(s)	624
AccIII	TCCGGA	1 cut(s)	1219
AciI	CCGC	1 cut(s)	624
AclI	AACGTT	1 cut(s)	345
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	9 cut(s)	924, 1143, 1241, 1249, 1305, 1373, 1385, 1610, 1655
AcuI	CTGAAG	1 cut(s)	1092
AcyI	GRCGYC	2 cut(s)	658, 1648
AdeI	CACNNNGTG	1 cut(s)	201
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	654
AflIII	ACRYGT	1 cut(s)	291
AjnI	CCWGG	1 cut(s)	1228
Alw26I	GTCTC	1 cut(s)	1505
AlwI	GGATC	1 cut(s)	277
AlwNI	CAGNNNCTG	1 cut(s)	1362
Aor13HI	TCCGGA	1 cut(s)	1219
ApoI	RAATTY	9 cut(s)	924, 1143, 1241, 1249, 1305, 1373, 1385, 1610, 1655
AseI	ATTAAT	2 cut(s)	501, 794
Asp700I	GAANNNNTTC	1 cut(s)	935
AspA2I	CCTAGG	1 cut(s)	1433
AspLEI	GCGC	2 cut(s)	624, 660
AspS9I	GGNCC	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	411
AvrII	CCTAGG	1 cut(s)	1433
BanI	GGYRCC	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	882
BccI	CCATC	2 cut(s)	294, 600
BciT130I	CCWGG	1 cut(s)	1230
BciVI	GTATCC	2 cut(s)	770, 1312
BcoDI	GTCTC	1 cut(s)	1505
BfaI	CTAG	5 cut(s)	512, 662, 813, 1434, 1560
BfmI	CTRYAG	2 cut(s)	525, 728
BfoI	RGCGCY	1 cut(s)	661
BfuAI	ACCTGC	1 cut(s)	133
BfuI	GTATCC	2 cut(s)	770, 1312
BglII	AGATCT	1 cut(s)	1081
BlnI	CCTAGG	1 cut(s)	1433
Bme1390I	CCNGG	1 cut(s)	1230
Bme18I	GGWCC	1 cut(s)	411
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	3 cut(s)	659, 847, 1638
BmrFI	CCNGG	1 cut(s)	1230
BmrI	ACTGGG	1 cut(s)	889
BmsI	GCATC	3 cut(s)	221, 312, 1354
BmuI	ACTGGG	1 cut(s)	889
BpiI	GAAGAC	1 cut(s)	882
BpuEI	CTTGAG	3 cut(s)	122, 1361, 1604
Bsa29I	ATCGAT	2 cut(s)	281, 1044
BsaHI	GRCGYC	2 cut(s)	658, 1648
BsaJI	CCNNGG	2 cut(s)	1024, 1433
BsaWI	WCCGGW	1 cut(s)	1219
Bsc4I	CCNNNNNNNGG	1 cut(s)	654
Bse1I	ACTGG	1 cut(s)	884
Bse3DI	GCAATG	1 cut(s)	1240
BseAI	TCCGGA	1 cut(s)	1219
BseBI	CCWGG	1 cut(s)	1230
BseCI	ATCGAT	2 cut(s)	281, 1044
BseDI	CCNNGG	2 cut(s)	1024, 1433
BseGI	GGATG	4 cut(s)	214, 236, 379, 471
BseLI	CCNNNNNNNGG	1 cut(s)	654
BseMI	GCAATG	1 cut(s)	1240
BseMII	CTCAG	1 cut(s)	1452
BseNI	ACTGG	1 cut(s)	884
BseRI	GAGGAG	1 cut(s)	986
BseYI	CCCAGC	1 cut(s)	914
Bsh1236I	CGCG	1 cut(s)	624
BshNI	GGYRCC	1 cut(s)	657
BshVI	ATCGAT	2 cut(s)	281, 1044
BsiSI	CCGG	1 cut(s)	1220
BslFI	GGGAC	1 cut(s)	1659
BslI	CCNNNNNNNGG	1 cut(s)	654
BsmAI	GTCTC	1 cut(s)	1505
BsmFI	GGGAC	1 cut(s)	1659
Bsp13I	TCCGGA	1 cut(s)	1219
Bsp143I	GATC	5 cut(s)	282, 590, 1041, 1045, 1081
BspACI	CCGC	1 cut(s)	624
BspCNI	CTCAG	1 cut(s)	1453
BspDI	ATCGAT	2 cut(s)	281, 1044
BspEI	TCCGGA	1 cut(s)	1219
BspFNI	CGCG	1 cut(s)	624
BspHI	TCATGA	1 cut(s)	1117
BspLI	GGNNCC	3 cut(s)	659, 847, 1638
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	657
BsrDI	GCAATG	1 cut(s)	1240
BsrI	ACTGG	1 cut(s)	884
BssECI	CCNNGG	2 cut(s)	1024, 1433
BssMI	GATC	5 cut(s)	282, 590, 1041, 1045, 1081
BssNAI	GTATAC	1 cut(s)	262
BssNI	GRCGYC	2 cut(s)	658, 1648
BssT1I	CCWWGG	2 cut(s)	1024, 1433
Bst1107I	GTATAC	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	1230
Bst4CI	ACNGT	3 cut(s)	252, 358, 526
BstACI	GRCGYC	2 cut(s)	658, 1648
BstDEI	CTNAG	6 cut(s)	56, 442, 944, 1049, 1461, 1526
BstF5I	GGATG	4 cut(s)	214, 236, 379, 471
BstFNI	CGCG	1 cut(s)	624
BstH2I	RGCGCY	1 cut(s)	661
BstHHI	GCGC	2 cut(s)	624, 660
BstKTI	GATC	5 cut(s)	285, 593, 1044, 1048, 1084
BstMAI	GTCTC	1 cut(s)	1505
BstMBI	GATC	5 cut(s)	282, 590, 1041, 1045, 1081
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	1230
BstNSI	RCATGY	2 cut(s)	295, 749
BstSCI	CCNGG	1 cut(s)	1228
BstSFI	CTRYAG	2 cut(s)	525, 728
BstUI	CGCG	1 cut(s)	624
BstV2I	GAAGAC	1 cut(s)	882
BstX2I	RGATCY	1 cut(s)	1081
BstYI	RGATCY	1 cut(s)	1081
BstZ17I	GTATAC	1 cut(s)	262
Bsu15I	ATCGAT	2 cut(s)	281, 1044
BsuI	GTATCC	2 cut(s)	770, 1312
BsuTUI	ATCGAT	2 cut(s)	281, 1044
BtsCI	GGATG	4 cut(s)	214, 236, 379, 471
BtsI	GCAGTG	1 cut(s)	859
BtsIMutI	CAGTG	2 cut(s)	522, 859
BveI	ACCTGC	1 cut(s)	133
CaiI	CAGNNNCTG	1 cut(s)	1362
CciI	TCATGA	1 cut(s)	1117
CfoI	GCGC	2 cut(s)	624, 660
Cfr13I	GGNCC	1 cut(s)	411
ClaI	ATCGAT	2 cut(s)	281, 1044
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	5 cut(s)	198, 292, 746, 1001, 1118
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	6 cut(s)	56, 442, 944, 1049, 1461, 1526
DinI	GGCGCC	1 cut(s)	659
DpnI	GATC	5 cut(s)	284, 592, 1043, 1047, 1083
DpnII	GATC	5 cut(s)	282, 590, 1041, 1045, 1081
DraI	TTTAAA	2 cut(s)	1254, 1452
DraIII	CACNNNGTG	1 cut(s)	201
Eco130I	CCWWGG	2 cut(s)	1024, 1433
Eco32I	GATATC	1 cut(s)	994
Eco47I	GGWCC	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	1092
EcoRI	GAATTC	2 cut(s)	1241, 1610
EcoRII	CCWGG	1 cut(s)	1228
EcoRV	GATATC	1 cut(s)	994
EcoT14I	CCWWGG	2 cut(s)	1024, 1433
EcoT22I	ATGCAT	2 cut(s)	327, 500
EgeI	GGCGCC	1 cut(s)	659
EheI	GGCGCC	1 cut(s)	659
ErhI	CCWWGG	2 cut(s)	1024, 1433
FaeI	CATG	5 cut(s)	201, 295, 749, 1004, 1121
FaqI	GGGAC	1 cut(s)	1659
FatI	CATG	5 cut(s)	197, 291, 745, 1000, 1117
FauNDI	CATATG	1 cut(s)	1188
FblI	GTMKAC	4 cut(s)	261, 528, 1510, 1552
FokI	GGATG	4 cut(s)	221, 243, 386, 458
FspBI	CTAG	5 cut(s)	512, 662, 813, 1434, 1560
GlaI	GCGC	2 cut(s)	623, 659
GsaI	CCCAGC	1 cut(s)	918
HaeII	RGCGCY	1 cut(s)	661
HapII	CCGG	1 cut(s)	1220
HhaI	GCGC	2 cut(s)	624, 660
Hin1I	GRCGYC	2 cut(s)	658, 1648
Hin1II	CATG	5 cut(s)	201, 295, 749, 1004, 1121
Hin6I	GCGC	2 cut(s)	622, 658
HinP1I	GCGC	2 cut(s)	622, 658
HincII	GTYRAC	1 cut(s)	1458
HindII	GTYRAC	1 cut(s)	1458
HindIII	AAGCTT	2 cut(s)	155, 1172
HinfI	GANTC	7 cut(s)	421, 485, 506, 633, 1102, 1204, 1549
HpaII	CCGG	1 cut(s)	1220
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	6 cut(s)	28, 262, 529, 1458, 1511, 1553
Hpy188I	TCNGA	6 cut(s)	65, 554, 574, 930, 1371, 1384
Hpy188III	TCNNGA	9 cut(s)	134, 206, 983, 1079, 1118, 1166, 1220, 1583, 1652
Hpy8I	GTNNAC	6 cut(s)	28, 262, 529, 1458, 1511, 1553
HpyAV	CCTTC	4 cut(s)	140, 395, 760, 1290
HpyCH4III	ACNGT	3 cut(s)	252, 358, 526
HpyCH4IV	ACGT	2 cut(s)	345, 1648
HpyCH4V	TGCA	8 cut(s)	122, 218, 234, 325, 498, 522, 1130, 1265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	6 cut(s)	56, 442, 944, 1049, 1461, 1526
HpySE526I	ACGT	2 cut(s)	345, 1648
Hsp92I	GRCGYC	2 cut(s)	658, 1648
Hsp92II	CATG	5 cut(s)	201, 295, 749, 1004, 1121
HspAI	GCGC	2 cut(s)	622, 658
KasI	GGCGCC	1 cut(s)	657
Kpn2I	TCCGGA	1 cut(s)	1219
Kzo9I	GATC	5 cut(s)	282, 590, 1041, 1045, 1081
LmnI	GCTCC	1 cut(s)	1636
LweI	GCATC	3 cut(s)	221, 312, 1354
MaeI	CTAG	5 cut(s)	512, 662, 813, 1434, 1560
MaeII	ACGT	2 cut(s)	345, 1648
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	5 cut(s)	284, 592, 1043, 1047, 1083
MboI	GATC	5 cut(s)	282, 590, 1041, 1045, 1081
MboII	GAAGA	9 cut(s)	3, 82, 183, 352, 848, 887, 896, 974, 1208
MfeI	CAATTG	1 cut(s)	1518
MflI	RGATCY	1 cut(s)	1081
Mly113I	GGCGCC	1 cut(s)	658
MlyI	GAGTC	1 cut(s)	1558
MmeI	TCCRAC	1 cut(s)	436
Mph1103I	ATGCAT	2 cut(s)	327, 500
MroI	TCCGGA	1 cut(s)	1219
MroXI	GAANNNNTTC	1 cut(s)	935
MseI	TTAA	9 cut(s)	152, 333, 501, 794, 1034, 1247, 1253, 1443, 1451
MslI	CAYNNNNRTG	3 cut(s)	493, 717, 744
MspA1I	CMGCKG	1 cut(s)	1362
MspI	CCGG	1 cut(s)	1220
MspR9I	CCNGG	1 cut(s)	1230
MunI	CAATTG	1 cut(s)	1518
MvaI	CCWGG	1 cut(s)	1230
MvnI	CGCG	1 cut(s)	624
MwoI	GCNNNNNNNGC	1 cut(s)	14
NarI	GGCGCC	1 cut(s)	658
NdeI	CATATG	1 cut(s)	1188
NdeII	GATC	5 cut(s)	282, 590, 1041, 1045, 1081
NlaIII	CATG	5 cut(s)	201, 295, 749, 1004, 1121
NlaIV	GGNNCC	3 cut(s)	659, 847, 1638
NmeAIII	GCCGAG	1 cut(s)	1392
NsiI	ATGCAT	2 cut(s)	327, 500
NspI	RCATGY	2 cut(s)	295, 749
PagI	TCATGA	1 cut(s)	1117
PaqCI	CACCTGC	1 cut(s)	133
PciI	ACATGT	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	935
PfeI	GAWTC	6 cut(s)	421, 485, 506, 633, 1102, 1204
PleI	GAGTC	1 cut(s)	1557
PluTI	GGCGCC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	1557
PscI	ACATGT	1 cut(s)	291
PshBI	ATTAAT	2 cut(s)	501, 794
PsiI	TTATAA	3 cut(s)	641, 836, 1669
Psp1406I	AACGTT	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	1228
PspFI	CCCAGC	1 cut(s)	914
PspGI	CCWGG	1 cut(s)	1228
PspN4I	GGNNCC	3 cut(s)	659, 847, 1638
PspPI	GGNCC	1 cut(s)	411
PsrI	GAACNNNNNNTAC	2 cut(s)	763, 795
PstNI	CAGNNNCTG	1 cut(s)	1362
PsuI	RGATCY	1 cut(s)	1081
PvuII	CAGCTG	1 cut(s)	1362
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
RseI	CAYNNNNRTG	3 cut(s)	493, 717, 744
SaqAI	TTAA	9 cut(s)	152, 333, 501, 794, 1034, 1247, 1253, 1443, 1451
Sau3AI	GATC	5 cut(s)	282, 590, 1041, 1045, 1081
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	1 cut(s)	1558
ScrFI	CCNGG	1 cut(s)	1230
SfaNI	GCATC	3 cut(s)	221, 312, 1354
SfcI	CTRYAG	2 cut(s)	525, 728
SfoI	GGCGCC	1 cut(s)	659
SinI	GGWCC	1 cut(s)	411
SmiMI	CAYNNNNRTG	3 cut(s)	493, 717, 744
SmlI	CTYRAG	3 cut(s)	101, 1340, 1583
SmoI	CTYRAG	3 cut(s)	101, 1340, 1583
SsiI	CCGC	1 cut(s)	624
SspDI	GGCGCC	1 cut(s)	657
SspI	AATATT	1 cut(s)	1328
SspMI	CTAG	5 cut(s)	512, 662, 813, 1434, 1560
StyD4I	CCNGG	1 cut(s)	1228
StyI	CCWWGG	2 cut(s)	1024, 1433
TaaI	ACNGT	3 cut(s)	252, 358, 526
TaiI	ACGT	2 cut(s)	348, 1651
TaqI	TCGA	4 cut(s)	281, 1044, 1096, 1494
TfiI	GAWTC	6 cut(s)	421, 485, 506, 633, 1102, 1204
Tru1I	TTAA	9 cut(s)	152, 333, 501, 794, 1034, 1247, 1253, 1443, 1451
Tru9I	TTAA	9 cut(s)	152, 333, 501, 794, 1034, 1247, 1253, 1443, 1451
TscAI	CASTG	2 cut(s)	529, 866
TspDTI	ATGAA	8 cut(s)	129, 225, 728, 735, 780, 903, 1134, 1175
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	2 cut(s)	529, 866
VpaK11BI	GGWCC	1 cut(s)	411
VspI	ATTAAT	2 cut(s)	501, 794
XapI	RAATTY	9 cut(s)	924, 1143, 1241, 1249, 1305, 1373, 1385, 1610, 1655
XceI	RCATGY	2 cut(s)	295, 749
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmaJI	CCTAGG	1 cut(s)	1433
XmiI	GTMKAC	4 cut(s)	261, 528, 1510, 1552
XmnI	GAANNNNTTC	1 cut(s)	935
XspI	CTAG	5 cut(s)	512, 662, 813, 1434, 1560
ZraI	GACGTC	1 cut(s)	1649
Zsp2I	ATGCAT	2 cut(s)	327, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.