Prupe.5G005800_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
678526 .. 679718
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G005800.1

Sequence Viewer

Length: 285 bp
ATGGAGAGTGTGGAGTTGAAGGTGGAGATGGTTGGGATACATGAGAAGCGACTTAGGAAATGCCTGTCCAAATTGAGAGGGATAGAAAAGGTGGAAGTAGATGCATACAGTCAGAAGGTGATTGTAACAGGATGCGTACACAGGAACAAATTACTGAAAGCAATCAGGAGAGGAGGATTGAAAGCTGATTTCTGGTCTCCCCAAAATGAGCTCCTCACTGCTTATGCCAGCGCCAGTTATGGAAGCTTGAGATTCAACAACAACTTCAACTTCAACTTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.78

Weight (kDa)

9.74

Isoelectric Point (pI)

29.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018525)

Species Orthologous Gene IDs
prunus_persica Prupe.5G005800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0216641
rosa_multiflora Rmu_sc0023624.1_g000002
rosa_roxburghii Rroxscaffold_3G00243050
rosa_rugosa Rorug07G0161300
rosa_samantha Rh7AG301200 Rh7BG292700 Rh7CG319800 Rh7DG301800
rosa_wichuraiana Rw7G025560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 138
AgsI TTSAA 5 cut(s) 19, 181, 256, 268, 274
AluBI AGCT 3 cut(s) 185, 211, 246
AluI AGCT 3 cut(s) 185, 211, 246
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 1 cut(s) 201
AspLEI GCGC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 130
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 213
BccI CCATC 1 cut(s) 22
BciVI GTATCC 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 1 cut(s) 283
BfoI RGCGCY 1 cut(s) 234
BfuI GTATCC 1 cut(s) 30
BmsI GCATC 2 cut(s) 91, 122
BpuEI CTTGAG 1 cut(s) 268
BsaI GGTCTC 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 234
BseRI GAGGAG 2 cut(s) 186, 203
BsiHKAI GWGCWC 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 201
BsrI ACTGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 137
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstMAI GTCTC 1 cut(s) 201
BsuI GTATCC 1 cut(s) 30
BtsCI GGATG 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 229
CfoI GCGC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 137
CviAII CATG 1 cut(s) 41
CviJI RGCY 3 cut(s) 185, 211, 246
CviKI_1 RGCY 3 cut(s) 185, 211, 246
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 211
EcoT22I ATGCAT 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 213
FaeI CATG 1 cut(s) 44
FaiI YATR 4 cut(s) 42, 106, 225, 240
FatI CATG 1 cut(s) 40
FokI GGATG 1 cut(s) 144
FriOI GRGCYC 1 cut(s) 213
FspBI CTAG 1 cut(s) 283
GlaI GCGC 1 cut(s) 232
HaeII RGCGCY 1 cut(s) 234
HhaI GCGC 1 cut(s) 233
Hin1II CATG 1 cut(s) 44
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HindIII AAGCTT 1 cut(s) 244
HinfI GANTC 1 cut(s) 252
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 13, 109
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 1 cut(s) 44
HspAI GCGC 1 cut(s) 231
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 7 cut(s) 77, 114, 127, 151, 178, 241, 247
LweI GCATC 2 cut(s) 91, 122
MaeI CTAG 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 2 cut(s) 71, 149
MnlI CCTC 4 cut(s) 71, 164, 167, 224
Mph1103I ATGCAT 1 cut(s) 106
NlaIII CATG 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 106
PfeI GAWTC 1 cut(s) 252
Psp124BI GAGCTC 1 cut(s) 213
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SacI GAGCTC 1 cut(s) 213
SduI GDGCHC 1 cut(s) 213
SetI ASST 6 cut(s) 24, 93, 120, 187, 213, 248
SfaNI GCATC 2 cut(s) 91, 122
SgeI CNNG 9 cut(s) 53, 76, 141, 154, 178, 205, 240, 246, 259
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 2 cut(s) 71, 149
SspMI CTAG 1 cut(s) 283
SstI GAGCTC 1 cut(s) 213
TaaI ACNGT 1 cut(s) 110
TasI AATT 2 cut(s) 71, 149
TfiI GAWTC 1 cut(s) 252
TscAI CASTG 1 cut(s) 223
TspRI CASTG 1 cut(s) 223
XspI CTAG 1 cut(s) 283
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.