Rh7AG301200

Heavy-metal-associated domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
33041099 .. 33041461
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG301200.1

Sequence Viewer

Length: 252 bp
ATGGTTGGCATACATGAGAAGAGACTCAGGAAATGCCTGTCAAAACTGAAAGGAATAGAAAAGGTGGAAGTAGATGCACACAGTCAGAAGGTGGTTGTAACAGGATATGCACATAAGAACAGATTGTTGAAAGCAATCAGGAGAGGTGGATTGAAAGCTGATTTCTGGTCTCCCCAAAATGAGCTCCTCACTGTTTATGCAAGTGCCACCACTTATGGAAGCTTGAGATTCAACAACTTCAACTTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.5

Weight (kDa)

10.14

Isoelectric Point (pI)

28.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 7 - 49 7.1e-07 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018525)

Species Orthologous Gene IDs
prunus_persica Prupe.5G005800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0216641
rosa_multiflora Rmu_sc0023624.1_g000002
rosa_roxburghii Rroxscaffold_3G00243050
rosa_rugosa Rorug07G0161300
rosa_samantha Rh7AG301200 Rh7BG292700 Rh7CG319800 Rh7DG301800
rosa_wichuraiana Rw7G025560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 4 cut(s) 130, 154, 232, 241
AluBI AGCT 3 cut(s) 158, 184, 222
AluI AGCT 3 cut(s) 158, 184, 222
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 2 cut(s) 16, 174
BanII GRGCYC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 16, 174
BfaI CTAG 1 cut(s) 250
BmsI GCATC 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 244
BsaI GGTCTC 1 cut(s) 174
BseMII CTCAG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 176
BsiHKAI GWGCWC 1 cut(s) 186
BsmAI GTCTC 2 cut(s) 16, 174
Bso31I GGTCTC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 39
BspTNI GGTCTC 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 83, 193
Bst6I CTCTTC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 26
BstMAI GTCTC 2 cut(s) 16, 174
BtsIMutI CAGTG 1 cut(s) 189
CviAII CATG 1 cut(s) 14
CviJI RGCY 3 cut(s) 158, 184, 222
CviKI_1 RGCY 3 cut(s) 158, 184, 222
DdeI CTNAG 1 cut(s) 26
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 174
Eco53kI GAGCTC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 1 cut(s) 17
FaiI YATR 6 cut(s) 11, 15, 108, 114, 198, 216
FatI CATG 1 cut(s) 13
FriOI GRGCYC 1 cut(s) 186
FspBI CTAG 1 cut(s) 250
Hin1II CATG 1 cut(s) 17
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 2 cut(s) 24, 228
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 2 cut(s) 28, 139
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 2 cut(s) 83, 193
HpyCH4V TGCA 3 cut(s) 77, 110, 200
HpyF3I CTNAG 1 cut(s) 26
Hsp92II CATG 1 cut(s) 17
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 5 cut(s) 13, 50, 87, 124, 151
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 97
MboII GAAGA 2 cut(s) 31, 238
MhlI GDGCHC 1 cut(s) 186
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 2 cut(s) 137, 197
NlaIII CATG 1 cut(s) 17
PfeI GAWTC 1 cut(s) 228
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Psp124BI GAGCTC 1 cut(s) 186
SacI GAGCTC 1 cut(s) 186
SchI GAGTC 1 cut(s) 18
SduI GDGCHC 1 cut(s) 186
SetI ASST 6 cut(s) 66, 93, 148, 160, 186, 224
SfaNI GCATC 1 cut(s) 64
SgeI CNNG 8 cut(s) 26, 40, 49, 114, 151, 178, 213, 235
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
SspMI CTAG 1 cut(s) 250
SstI GAGCTC 1 cut(s) 186
TaaI ACNGT 2 cut(s) 83, 193
TfiI GAWTC 1 cut(s) 228
TscAI CASTG 1 cut(s) 196
TspRI CASTG 1 cut(s) 196
XspI CTAG 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.